pycom09g18840

Polyamine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011767
Physical Location & Seq
Forward (+)
19584549 .. 19590602
6054 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18840.4

Sequence Viewer

Length: 1479 bp
ATGGACCCGAAGGATCCGTTATCTGCTGATTTATTTGATGGCTCTGTTTTGTCTCACATTGAGAGGCAACAGAATGTATGCCCTTCTGTTATTGTTATTGGTGGCGGTATATCAGGGATTGCTGCTGCCCGTATTCTCCATGATGCATCTTTTAAGGTGGTTTTGCTCGAATCACGGGACAGACTTGGTGGCCGGATTCATACCGACTACTCATTTGGTTGTCCAGTCGATATGGGAGCATCATGGCTGCATGGTGTTTGCAATGAGAATCCTTTGGCTCCACTGATACGCCGACTAGGACTTACTTTATACCGTACAAGTGGTGACGACTCTGTCTTGTATGACCATGATTTGGAAAGCTTTGCACTTTTTGATATGGATGGCCGTCAAGTTCCTCAAAAGATGGTTGTTGAAGTTGGTGATACTTTCAAGAAGATTCTCAAAGGGACTGAGAAAGTAAGGATTGAGAATTCTGATGACATGTCCGTCTGTCAAGCAATTTCTGTAGTGATGGATAGGCATCCTGAATTAAGACAAAAAGGACTTGCTCACGAAGTGTTACAATGGTACATATGTCGAATGGAAGCATGGTTTGCTGCTGATGCAGATGTAATATCCCTAAAAAACTGGGATCAGGAGCATGTTCTATCTGGTGGTCATGGACTTATGGTGCAAGGCTATGACCCAATAATAAAGGCTCTTGCAAAAGATATTGATGTACACTTGAATCACAGGGTGACGAAGATATTGTATGGGTCTAATAAGGTGATGGTCACAATTGAAGACGGAAGAAACTTCATTGCTGATGCGGCTATAATAACAGTACCCCATGGGATTCTTAAAGCCAATTTGATTGAGTTCGAACCTCAGTTGCCTGAGTGGAAGGTTGCTGCAATTTCTGATCTTGGTGTGGGCAATGAAAACAAAATTGCCTTGCGATTTGAGAAAGTTTTCTGGCCAAATGTAGAGCTCTTGGGTATTGTTGCACCAAATTCTTATGGATGTGGTTATTTTCTCAATCTTCACAAGGTTACAGGCCATCCGGTCCTCATATATATGGCTGCTGGAAGGTTTGCATATGACCTTGAAAGCCTAACAGATGACGCTGCTGTTAATTTTGTGATGTTGCAGCTTAAGAAGATGATGTCTGATGCCACTGCACCAGTTCATTATCTGGTATCACGATGGGGAACAGATGTGAATTCCCTTGGATGTTACGCGTTGGATTTGGTTGGAAAGCCAGGAGATATATACGAGAGGCTTCGGGCACCTTTGGGTAATCTTTTTTTTGGTGGGGAGGCTGTTAGCATGGACCACCAAGGATCTGTACACGGAGCTTACTCCGCAGGAGTTATGGCTGCTGAGAACTGTCAGCGGCATCTGTTACAGAAACTCGGAAATTTGGAGACCCTTCAGCACGCTTACTTTAGGGATGAAGTGCTTGAAGGAACAGTTCCCATCCAAATCTCAAGGATGTGA

Protein Analysis

493

Amino Acids

54.42

Weight (kDa)

5.6

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65840
fragaria_vesca FvH4_1g27430
malus_domestica MD09G1280300.v1.1 MD17G1287500.v1.1
prunus_persica Prupe.3G013800_v2.0.a1 Prupe.3G013800_v2.0.a1
pyrus_communis pycom09g18840 pycom17g27050
rosa_chinensis RchiOBHm_Chr3g0488611
rosa_laevigata RLG00000022940
rosa_multiflora Rmu_sc0005363.1_g000049
rosa_roxburghii Rroxscaffold_6G00394100
rosa_rugosa Rorug03G0239500 Rorug03G0239600
rosa_samantha Rh3AG288500 Rh3BG325200 Rh3CG322800 Rh3DG321500
rosa_wichuraiana Rw3G025530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 332, 485
AccB1I GGYRCC 1 cut(s) 1267
AccB7I CCANNNNNTGG 1 cut(s) 352
AccII CGCG 1 cut(s) 1220
AciI CCGC 4 cut(s) 105, 809, 1344, 1375
AclWI GGATC 4 cut(s) 8, 21, 639, 1330
AcoI YGGCCR 3 cut(s) 190, 382, 956
AcsI RAATTY 4 cut(s) 469, 991, 1201, 1399
AcuI CTGAAG 1 cut(s) 1397
AdeI CACNNNGTG 2 cut(s) 556, 736
AfaI GTAC 5 cut(s) 316, 569, 720, 825, 1329
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 1 cut(s) 1133
AflIII ACRYGT 2 cut(s) 480, 1218
AgsI TTSAA 6 cut(s) 413, 430, 727, 782, 1088, 1445
AjnI CCWGG 1 cut(s) 1240
AluBI AGCT 4 cut(s) 360, 970, 1132, 1337
AluI AGCT 4 cut(s) 360, 970, 1132, 1337
Alw21I GWGCWC 1 cut(s) 972
Alw26I GTCTC 2 cut(s) 57, 1400
AlwI GGATC 4 cut(s) 8, 21, 639, 1330
AoxI GGCC 4 cut(s) 190, 382, 956, 1036
ApeKI GCWGC 9 cut(s) 122, 125, 247, 596, 890, 1061, 1106, 1129, 1358
ApoI RAATTY 4 cut(s) 469, 991, 1201, 1399
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp700I GAANNNNTTC 1 cut(s) 950
AspS9I GGNCC 3 cut(s) 4, 1045, 1312
AsuHPI GGTGA 4 cut(s) 335, 431, 748, 778
AsuII TTCGAA 1 cut(s) 861
AvaII GGWCC 3 cut(s) 4, 1045, 1312
BaeGI GKGCMC 1 cut(s) 1270
BaeI ACNNNNGTAYC 2 cut(s) 559, 592
BalI TGGCCA 1 cut(s) 958
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 1267
BanII GRGCYC 1 cut(s) 972
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 1 cut(s) 972
BbvI GCAGC 9 cut(s) 109, 112, 234, 583, 877, 1048, 1093, 1141, 1345
BccI CCATC 8 cut(s) 32, 374, 397, 505, 763, 1047, 1179, 1466
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 1242
BcoDI GTCTC 2 cut(s) 57, 1400
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 504
BfrI CTTAAG 1 cut(s) 1133
Bme1390I CCNGG 1 cut(s) 1242
Bme18I GGWCC 3 cut(s) 4, 1045, 1312
BmgT120I GGNCC 3 cut(s) 4, 1045, 1312
BmiI GGNNCC 4 cut(s) 6, 15, 279, 1269
BmrFI CCNGG 1 cut(s) 1242
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 8 cut(s) 133, 155, 248, 529, 592, 796, 1141, 1387
BmuI ACTGGG 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 789
Bpu14I TTCGAA 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 1453
BsaBI GATNNNNATC 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 1400
BsaJI CCNNGG 3 cut(s) 829, 1207, 1318
BsaWI WCCGGW 1 cut(s) 1042
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 3 cut(s) 224, 632, 1163
Bse3DI GCAATG 3 cut(s) 268, 798, 922
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 1 cut(s) 1242
BseDI CCNNGG 3 cut(s) 829, 1207, 1318
BseGI GGATG 8 cut(s) 385, 520, 1007, 1039, 1217, 1438, 1458, 1479
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 3 cut(s) 268, 798, 922
BseMII CTCAG 4 cut(s) 441, 867, 881, 1353
BseNI ACTGG 3 cut(s) 224, 632, 1163
BseSI GKGCMC 1 cut(s) 1270
BseXI GCAGC 9 cut(s) 109, 112, 234, 583, 877, 1048, 1093, 1141, 1345
BsgI GTGCAG 1 cut(s) 1143
Bsh1236I CGCG 1 cut(s) 1220
BshFI GGCC 4 cut(s) 192, 384, 958, 1038
BshNI GGYRCC 1 cut(s) 1267
BsiHKAI GWGCWC 1 cut(s) 972
BsiSI CCGG 2 cut(s) 193, 1043
BslFI GGGAC 2 cut(s) 191, 460
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 57, 1400
BsmFI GGGAC 2 cut(s) 191, 460
BsnI GGCC 4 cut(s) 192, 384, 958, 1038
Bso31I GGTCTC 1 cut(s) 1400
Bsp119I TTCGAA 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 972, 1270
Bsp1407I TGTACA 2 cut(s) 718, 1327
Bsp143I GATC 4 cut(s) 13, 631, 901, 1322
Bsp19I CCATGG 1 cut(s) 829
BspACI CCGC 4 cut(s) 105, 809, 1344, 1375
BspANI GGCC 4 cut(s) 192, 384, 958, 1038
BspCNI CTCAG 4 cut(s) 442, 868, 880, 1354
BspFNI CGCG 1 cut(s) 1220
BspLI GGNNCC 4 cut(s) 6, 15, 279, 1269
BspPI GGATC 4 cut(s) 8, 21, 639, 1330
BspT104I TTCGAA 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 1267
BspTI CTTAAG 1 cut(s) 1133
BspTNI GGTCTC 1 cut(s) 1400
BsrDI GCAATG 3 cut(s) 268, 798, 922
BsrGI TGTACA 2 cut(s) 718, 1327
BsrI ACTGG 3 cut(s) 224, 632, 1163
BssECI CCNNGG 3 cut(s) 829, 1207, 1318
BssMI GATC 4 cut(s) 13, 631, 901, 1322
BssT1I CCWWGG 3 cut(s) 829, 1207, 1318
Bst2UI CCWGG 1 cut(s) 1242
Bst4CI ACNGT 4 cut(s) 314, 823, 1370, 1453
BstAFI CTTAAG 1 cut(s) 1133
BstAPI GCANNNNNTGC 1 cut(s) 593
BstAUI TGTACA 2 cut(s) 718, 1327
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 1 cut(s) 1419
BstDEI CTNAG 4 cut(s) 450, 867, 876, 1362
BstDSI CCRYGG 1 cut(s) 829
BstF5I GGATG 8 cut(s) 385, 520, 1007, 1039, 1217, 1438, 1458, 1479
BstFNI CGCG 1 cut(s) 1220
BstKTI GATC 4 cut(s) 16, 634, 904, 1325
BstMAI GTCTC 2 cut(s) 57, 1400
BstMBI GATC 4 cut(s) 13, 631, 901, 1322
BstMWI GCNNNNNNNGC 4 cut(s) 593, 602, 809, 1343
BstNI CCWGG 1 cut(s) 1242
BstNSI RCATGY 2 cut(s) 484, 644
BstSCI CCNGG 1 cut(s) 1240
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 1270
BstUI CGCG 1 cut(s) 1220
BstV1I GCAGC 9 cut(s) 109, 112, 234, 583, 877, 1048, 1093, 1141, 1345
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 2 cut(s) 13, 1322
BstYI RGATCY 2 cut(s) 13, 1322
BsuRI GGCC 4 cut(s) 192, 384, 958, 1038
BtgI CCRYGG 1 cut(s) 829
BtsCI GGATG 8 cut(s) 385, 520, 1007, 1039, 1217, 1438, 1458, 1479
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 2 cut(s) 281, 1155
Cac8I GCNNGC 1 cut(s) 1419
Cfr13I GGNCC 3 cut(s) 4, 1045, 1312
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 5 cut(s) 315, 568, 719, 824, 1328
CviQI GTAC 5 cut(s) 315, 568, 719, 824, 1328
DdeI CTNAG 4 cut(s) 450, 867, 876, 1362
DpnI GATC 4 cut(s) 15, 633, 903, 1324
DpnII GATC 4 cut(s) 13, 631, 901, 1322
DraIII CACNNNGTG 2 cut(s) 556, 736
DrdI GACNNNNNNGTC 2 cut(s) 332, 485
DseDI GACNNNNNNGTC 2 cut(s) 332, 485
EaeI YGGCCR 3 cut(s) 190, 382, 956
Ecl136II GAGCTC 1 cut(s) 970
Eco130I CCWWGG 3 cut(s) 829, 1207, 1318
Eco24I GRGCYC 1 cut(s) 972
Eco31I GGTCTC 1 cut(s) 1400
Eco47I GGWCC 3 cut(s) 4, 1045, 1312
Eco53kI GAGCTC 1 cut(s) 970
Eco57I CTGAAG 1 cut(s) 1397
EcoICRI GAGCTC 1 cut(s) 970
EcoRI GAATTC 2 cut(s) 469, 1201
EcoRII CCWGG 1 cut(s) 1240
EcoT14I CCWWGG 3 cut(s) 829, 1207, 1318
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 3 cut(s) 829, 1207, 1318
FaqI GGGAC 2 cut(s) 191, 460
FauNDI CATATG 2 cut(s) 572, 1078
FokI GGATG 7 cut(s) 392, 507, 1014, 1026, 1224, 1445, 1445
FriOI GRGCYC 1 cut(s) 972
FspBI CTAG 1 cut(s) 296
HaeIII GGCC 4 cut(s) 192, 384, 958, 1038
HapII CCGG 2 cut(s) 193, 1043
HgaI GACGC 1 cut(s) 1112
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 7 cut(s) 170, 196, 268, 329, 436, 727, 835
HpaII CCGG 2 cut(s) 193, 1043
HphI GGTGA 4 cut(s) 335, 431, 748, 778
Hpy166II GTNNAC 2 cut(s) 721, 1330
Hpy188I TCNGA 4 cut(s) 475, 901, 1150, 1397
Hpy188III TCNNGA 5 cut(s) 430, 524, 551, 635, 1182
Hpy8I GTNNAC 2 cut(s) 721, 1330
HpyAV CCTTC 6 cut(s) 4, 93, 877, 1062, 1421, 1439
HpyCH4III ACNGT 4 cut(s) 314, 823, 1370, 1453
HpyF10VI GCNNNNNNNGC 4 cut(s) 593, 602, 809, 1343
HpyF3I CTNAG 4 cut(s) 450, 867, 876, 1362
Kzo9I GATC 4 cut(s) 13, 631, 901, 1322
LmnI GCTCC 4 cut(s) 236, 283, 637, 1334
Lsp1109I GCAGC 9 cut(s) 109, 112, 234, 583, 877, 1048, 1093, 1141, 1345
LweI GCATC 8 cut(s) 133, 155, 248, 529, 592, 796, 1141, 1387
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 7 cut(s) 323, 558, 736, 772, 1030, 1214, 1383
MalI GATC 4 cut(s) 15, 633, 903, 1324
MboI GATC 4 cut(s) 13, 631, 901, 1322
MboII GAAGA 6 cut(s) 445, 754, 794, 801, 1013, 1150
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 2 cut(s) 13, 1322
MhlI GDGCHC 2 cut(s) 972, 1270
MlsI TGGCCA 1 cut(s) 958
MluI ACGCGT 1 cut(s) 1218
MluNI TGGCCA 1 cut(s) 958
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 1203, 1213
MnlI CCTC 6 cut(s) 57, 405, 876, 1058, 1251, 1291
Mox20I TGGCCA 1 cut(s) 958
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 950
MscI TGGCCA 1 cut(s) 958
MseI TTAA 5 cut(s) 153, 530, 840, 1113, 1134
MslI CAYNNNNRTG 1 cut(s) 1055
Msp20I TGGCCA 1 cut(s) 958
MspA1I CMGCKG 1 cut(s) 1375
MspCI CTTAAG 1 cut(s) 1133
MspI CCGG 2 cut(s) 193, 1043
MspR9I CCNGG 1 cut(s) 1242
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 1242
MvnI CGCG 1 cut(s) 1220
MwoI GCNNNNNNNGC 4 cut(s) 593, 602, 809, 1343
NcoI CCATGG 1 cut(s) 829
NdeI CATATG 2 cut(s) 572, 1078
NdeII GATC 4 cut(s) 13, 631, 901, 1322
NlaIV GGNNCC 4 cut(s) 6, 15, 279, 1269
NmuCI GTSAC 3 cut(s) 323, 736, 772
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 484, 644
NspV TTCGAA 1 cut(s) 861
PciI ACATGT 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 950
PfeI GAWTC 6 cut(s) 170, 196, 268, 436, 727, 835
PflFI GACNNNGTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 352
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PscI ACATGT 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 972
Psp6I CCWGG 1 cut(s) 1240
PspGI CCWGG 1 cut(s) 1240
PspN4I GGNNCC 4 cut(s) 6, 15, 279, 1269
PspPI GGNCC 3 cut(s) 4, 1045, 1312
PsuI RGATCY 2 cut(s) 13, 1322
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 5 cut(s) 316, 569, 720, 825, 1329
RsaNI GTAC 5 cut(s) 315, 568, 719, 824, 1328
RseI CAYNNNNRTG 1 cut(s) 1055
SacI GAGCTC 1 cut(s) 972
SaqAI TTAA 5 cut(s) 153, 530, 840, 1113, 1134
Sau3AI GATC 4 cut(s) 13, 631, 901, 1322
Sau96I GGNCC 3 cut(s) 4, 1045, 1312
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 1242
SduI GDGCHC 2 cut(s) 972, 1270
SfaNI GCATC 8 cut(s) 133, 155, 248, 529, 592, 796, 1141, 1387
SfcI CTRYAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 861
SinI GGWCC 3 cut(s) 4, 1045, 1312
SmiMI CAYNNNNRTG 1 cut(s) 1055
SmlI CTYRAG 2 cut(s) 1133, 1468
SmoI CTYRAG 2 cut(s) 1133, 1468
SsiI CCGC 4 cut(s) 105, 809, 1344, 1375
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 972
StyD4I CCNGG 1 cut(s) 1240
StyI CCWWGG 3 cut(s) 829, 1207, 1318
TaaI ACNGT 4 cut(s) 314, 823, 1370, 1453
TaqI TCGA 4 cut(s) 168, 228, 577, 861
TatI WGTACW 2 cut(s) 718, 1327
TauI GCSGC 2 cut(s) 812, 1378
TfiI GAWTC 6 cut(s) 170, 196, 268, 436, 727, 835
Tru1I TTAA 5 cut(s) 153, 530, 840, 1113, 1134
Tru9I TTAA 5 cut(s) 153, 530, 840, 1113, 1134
TscAI CASTG 2 cut(s) 288, 1162
TseFI GTSAC 3 cut(s) 323, 736, 772
TseI GCWGC 9 cut(s) 122, 125, 247, 596, 890, 1061, 1106, 1129, 1358
Tsp45I GTSAC 3 cut(s) 323, 736, 772
TspDTI ATGAA 5 cut(s) 188, 787, 933, 1157, 1449
TspGWI ACGGA 4 cut(s) 6, 475, 801, 1347
TspRI CASTG 2 cut(s) 288, 1162
Tth111I GACNNNGTC 1 cut(s) 332
Van91I CCANNNNNTGG 1 cut(s) 352
Vha464I CTTAAG 1 cut(s) 1133
VpaK11BI GGWCC 3 cut(s) 4, 1045, 1312
XapI RAATTY 4 cut(s) 469, 991, 1201, 1399
XceI RCATGY 2 cut(s) 484, 644
XmnI GAANNNNTTC 1 cut(s) 950
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.