MD17G1287500.v1.1

Polyamine oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
34673835 .. 34679547
5713 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1287500.v1.1.491

Sequence Viewer

Length: 1500 bp
ATGGACCCGAAGGATCCATTCTCTGCTGTATTATTTGATGGCTCTGTTTCGTCTCACATTGAGAGGCAACAGAATGCATGCCCTTCTGTTATTGTTATTGGTGGTGGGATATCAGGGATTGCTGCTGCACGTATTCTCCATGATGCATCTTTTAAGGTCACTGATCTGCAACTTTTAGTGCTTTTGCTCGAATCACGGGACAGACTTGGTGGCCGGATTCATACGGACTACTCATTTGGTTGTCCAGTCGATATGGGAGCATCATGGCTACATGGTGTTTGCAACGAGAATCCTTTGGCTCCACTGATACGCCGCCTAGGACTTACTCTATACCGTACGAGTGGCGATGACTCTGTGTTGTATGACCACGATTTGGAAAGCTTTGCTCTTTTTGATACGGATGGCCACCAAGTTCCTCAAAAGATGGTAGTTGAAGTTGGTGATACTTTCAAGAAAATTCTCAGAGAGACTGAGAAAGTAAGGAATGAGCATACCGATGACATGTCCGTTTCTCAAGCAATTTCTGTTGTGATGGATAGGCATCCTGAATTAAGACAAAACGGACTTGCTCACGAAGTGTTACAATGGTACATATGTCGAATGGAAGCCTGGTTTGCCGCAGATGCAGATGTAATATCACTAAAAAACTGGGATCAGCATGTTCTATCCGGTGGTCATGGACTTATGGTGCAAGGGTATGACCCAATAATAAAGGCTCTTGCAAAAGATATTGATGTACGCTTGAATCACAGGGTGACAAAGTTATTAAATGGGTCTAACAAGGTGATGGTCACAATTGAGGACGGAAGAAACTTCATTGCAGATGCTGCTATAATAACAGTACCCCATGGGATTCTTAAAGCCAAGTTGATTGAGTTCGTACCCCAGTTGCCTGAGTGGAAGGTTGCTGCAATTTCTGATCTCGGTGTGGGCAATGAAAACAAAGTTGCCCTACGGTTTGAGAAAATTTTCTGGCCAAATGTAGAGCTCTTGGGCATTGTTGCACCAAATTCTTATGCATGTGGTTATTTTCTCAATCTTCACAAGGCCACAGGCCATCCGGTCCTCGTCTACATGGCTGCTGGAAGATTTGCATATGACCTTGAAAAACTAACTGACGATGCTGCTGTTAATTTTGTGATGTTGCAGCTTAAGAAGATGTTACCTGATGCCACCGAGCCAGTTCAATATCTGTTATCACGATGGGGAACGGACCTGAATTCTCTTGGATGTTACGCGTTGGATTTGGTTGGAAAGCCAGGAGATATATATGAGAGGCTTCGGGCACCTTTGGGTAATCTCTTTTTCGGTGGGGAAGCTGTTAGCATGGACCACCAAGGATCTGTACACGGAGCTTACTCCGCAGGAGTTATGGCTGCTGAGAACTGTCAGCAGCATCTGTTGAAGAAACTCGGTAATTTGGAGAGCCCTCAGCATGCTTACCTTATGGAGGAAGTGCTTGAAGCAGCAACAGTTCCCCTCCAAATCTCAAGGATGTGA

Protein Analysis

500

Amino Acids

55.13

Weight (kDa)

5.6

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 32 - 105 5e-11 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 37 - 462 2.4e-80 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011767)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1285
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 1 cut(s) 1071
AccII CGCG 1 cut(s) 1238
AciI CCGC 3 cut(s) 313, 618, 1362
AclWI GGATC 4 cut(s) 8, 21, 660, 1348
AcoI YGGCCR 3 cut(s) 211, 403, 974
AcsI RAATTY 4 cut(s) 456, 966, 1009, 1219
AdeI CACNNNGTG 2 cut(s) 577, 754
AfaI GTAC 6 cut(s) 337, 590, 738, 843, 882, 1347
AfiI CCNNNNNNNGG 2 cut(s) 373, 1450
AflII CTTAAG 1 cut(s) 1151
AflIII ACRYGT 2 cut(s) 501, 1236
AgsI TTSAA 7 cut(s) 434, 451, 745, 1106, 1187, 1405, 1463
AjnI CCWGG 2 cut(s) 608, 1258
AluBI AGCT 5 cut(s) 381, 988, 1150, 1319, 1355
AluI AGCT 5 cut(s) 381, 988, 1150, 1319, 1355
Alw21I GWGCWC 1 cut(s) 990
Alw26I GTCTC 2 cut(s) 57, 461
AlwI GGATC 4 cut(s) 8, 21, 660, 1348
AlwNI CAGNNNCTG 2 cut(s) 827, 1399
AoxI GGCC 5 cut(s) 211, 403, 974, 1047, 1054
ApoI RAATTY 4 cut(s) 456, 966, 1009, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
Asp700I GAANNNNTTC 1 cut(s) 968
AspA2I CCTAGG 1 cut(s) 316
AspS9I GGNCC 4 cut(s) 4, 1063, 1213, 1330
AsuHPI GGTGA 3 cut(s) 452, 766, 796
AvaII GGWCC 4 cut(s) 4, 1063, 1213, 1330
AvrII CCTAGG 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 1288
BaeI ACNNNNGTAYC 2 cut(s) 580, 613
BalI TGGCCA 2 cut(s) 405, 976
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 1285
BanII GRGCYC 2 cut(s) 990, 1430
Bbv12I GWGCWC 1 cut(s) 990
BbvCI CCTCAGC 1 cut(s) 1431
BccI CCATC 7 cut(s) 32, 395, 418, 526, 781, 1065, 1197
BciT130I CCWGG 2 cut(s) 610, 1260
BcoDI GTCTC 2 cut(s) 57, 461
BfaI CTAG 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 1151
BlnI CCTAGG 1 cut(s) 316
Bme1390I CCNGG 2 cut(s) 610, 1260
Bme18I GGWCC 4 cut(s) 4, 1063, 1213, 1330
BmgT120I GGNCC 4 cut(s) 4, 1063, 1213, 1330
BmiI GGNNCC 4 cut(s) 6, 15, 300, 1287
BmrFI CCNGG 2 cut(s) 610, 1260
BmrI ACTGGG 2 cut(s) 658, 880
BmsI GCATC 9 cut(s) 133, 155, 269, 550, 613, 814, 1111, 1159, 1405
BmuI ACTGGG 2 cut(s) 658, 880
Bpu10I CCTNAGC 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 498, 1474
BsaAI YACGTR 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 316, 847, 1336
BsaWI WCCGGW 2 cut(s) 668, 1060
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 1450
Bse1I ACTGG 4 cut(s) 245, 653, 886, 1181
Bse3DI GCAATG 2 cut(s) 816, 940
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 610, 1260
BseDI CCNNGG 3 cut(s) 316, 847, 1336
BseGI GGATG 5 cut(s) 406, 541, 1057, 1235, 1500
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 373, 1450
BseMI GCAATG 2 cut(s) 816, 940
BseMII CTCAG 5 cut(s) 462, 475, 885, 1371, 1445
BseNI ACTGG 4 cut(s) 245, 653, 886, 1181
BseSI GKGCMC 1 cut(s) 1288
BsgI GTGCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 1238
BshFI GGCC 5 cut(s) 213, 405, 976, 1049, 1056
BshNI GGYRCC 1 cut(s) 1285
BsiHKAI GWGCWC 1 cut(s) 990
BsiSI CCGG 3 cut(s) 214, 669, 1061
BsiWI CGTACG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 373, 1450
BsmAI GTCTC 2 cut(s) 57, 461
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 5 cut(s) 213, 405, 976, 1049, 1056
Bsp1286I GDGCHC 3 cut(s) 990, 1288, 1430
Bsp1407I TGTACA 1 cut(s) 1345
Bsp143I GATC 5 cut(s) 13, 163, 652, 919, 1340
Bsp19I CCATGG 1 cut(s) 847
BspACI CCGC 3 cut(s) 313, 618, 1362
BspANI GGCC 5 cut(s) 213, 405, 976, 1049, 1056
BspCNI CTCAG 5 cut(s) 463, 474, 886, 1372, 1444
BspFNI CGCG 1 cut(s) 1238
BspLI GGNNCC 4 cut(s) 6, 15, 300, 1287
BspPI GGATC 4 cut(s) 8, 21, 660, 1348
BspT107I GGYRCC 1 cut(s) 1285
BspTI CTTAAG 1 cut(s) 1151
BsrDI GCAATG 2 cut(s) 816, 940
BsrGI TGTACA 1 cut(s) 1345
BsrI ACTGG 4 cut(s) 245, 653, 886, 1181
BssECI CCNNGG 3 cut(s) 316, 847, 1336
BssMI GATC 5 cut(s) 13, 163, 652, 919, 1340
BssT1I CCWWGG 3 cut(s) 316, 847, 1336
Bst2UI CCWGG 2 cut(s) 610, 1260
Bst4CI ACNGT 5 cut(s) 335, 841, 957, 1388, 1474
BstAFI CTTAAG 1 cut(s) 1151
BstAPI GCANNNNNTGC 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 1345
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 79, 1437
BstDEI CTNAG 5 cut(s) 461, 471, 894, 1380, 1431
BstDSI CCRYGG 1 cut(s) 847
BstENI CCTNNNNNAGG 1 cut(s) 1448
BstF5I GGATG 5 cut(s) 406, 541, 1057, 1235, 1500
BstFNI CGCG 1 cut(s) 1238
BstKTI GATC 5 cut(s) 16, 166, 655, 922, 1343
BstMAI GTCTC 2 cut(s) 57, 461
BstMBI GATC 5 cut(s) 13, 163, 652, 919, 1340
BstMWI GCNNNNNNNGC 4 cut(s) 614, 623, 827, 1361
BstNI CCWGG 2 cut(s) 610, 1260
BstNSI RCATGY 5 cut(s) 81, 505, 662, 1023, 1439
BstSCI CCNGG 2 cut(s) 608, 1258
BstSLI GKGCMC 1 cut(s) 1288
BstUI CGCG 1 cut(s) 1238
BstX2I RGATCY 2 cut(s) 13, 1340
BstYI RGATCY 2 cut(s) 13, 1340
BsuRI GGCC 5 cut(s) 213, 405, 976, 1049, 1056
BtgI CCRYGG 1 cut(s) 847
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 5 cut(s) 406, 541, 1057, 1235, 1500
BtsIMutI CAGTG 2 cut(s) 159, 302
Cac8I GCNNGC 2 cut(s) 79, 1437
CaiI CAGNNNCTG 2 cut(s) 827, 1399
Cfr13I GGNCC 4 cut(s) 4, 1063, 1213, 1330
Csp6I GTAC 6 cut(s) 336, 589, 737, 842, 881, 1346
CviQI GTAC 6 cut(s) 336, 589, 737, 842, 881, 1346
DdeI CTNAG 5 cut(s) 461, 471, 894, 1380, 1431
DpnI GATC 5 cut(s) 15, 165, 654, 921, 1342
DpnII GATC 5 cut(s) 13, 163, 652, 919, 1340
DraIII CACNNNGTG 2 cut(s) 577, 754
EaeI YGGCCR 3 cut(s) 211, 403, 974
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 3 cut(s) 316, 847, 1336
Eco24I GRGCYC 2 cut(s) 990, 1430
Eco32I GATATC 1 cut(s) 111
Eco47I GGWCC 4 cut(s) 4, 1063, 1213, 1330
Eco53kI GAGCTC 1 cut(s) 988
EcoICRI GAGCTC 1 cut(s) 988
EcoNI CCTNNNNNAGG 1 cut(s) 1448
EcoRI GAATTC 1 cut(s) 1219
EcoRII CCWGG 2 cut(s) 608, 1258
EcoRV GATATC 1 cut(s) 111
EcoT14I CCWWGG 3 cut(s) 316, 847, 1336
EcoT22I ATGCAT 3 cut(s) 79, 148, 1021
EcoT38I GRGCYC 2 cut(s) 990, 1430
ErhI CCWWGG 3 cut(s) 316, 847, 1336
Esp3I CGTCTC 1 cut(s) 57
FaqI GGGAC 1 cut(s) 212
FauNDI CATATG 2 cut(s) 593, 1096
FblI GTMKAC 1 cut(s) 1071
FokI GGATG 4 cut(s) 413, 528, 1044, 1242
FriOI GRGCYC 2 cut(s) 990, 1430
FspBI CTAG 1 cut(s) 317
HaeIII GGCC 5 cut(s) 213, 405, 976, 1049, 1056
HapII CCGG 3 cut(s) 214, 669, 1061
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 6 cut(s) 191, 217, 289, 350, 745, 853
HpaII CCGG 3 cut(s) 214, 669, 1061
HphI GGTGA 3 cut(s) 452, 766, 796
Hpy166II GTNNAC 2 cut(s) 1072, 1348
Hpy188I TCNGA 2 cut(s) 464, 919
Hpy188III TCNNGA 4 cut(s) 451, 545, 572, 1200
Hpy8I GTNNAC 2 cut(s) 1072, 1348
HpyAV CCTTC 3 cut(s) 4, 93, 895
HpyCH4III ACNGT 5 cut(s) 335, 841, 957, 1388, 1474
HpyCH4IV ACGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 4 cut(s) 614, 623, 827, 1361
HpyF3I CTNAG 5 cut(s) 461, 471, 894, 1380, 1431
HpySE526I ACGT 1 cut(s) 130
Kzo9I GATC 5 cut(s) 13, 163, 652, 919, 1340
LmnI GCTCC 3 cut(s) 257, 304, 1352
LweI GCATC 9 cut(s) 133, 155, 269, 550, 613, 814, 1111, 1159, 1405
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 6 cut(s) 157, 579, 754, 790, 1161, 1232
MalI GATC 5 cut(s) 15, 165, 654, 921, 1342
MboI GATC 5 cut(s) 13, 163, 652, 919, 1340
MboII GAAGA 5 cut(s) 819, 1031, 1098, 1168, 1417
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 2 cut(s) 13, 1340
MhlI GDGCHC 3 cut(s) 990, 1288, 1430
MlsI TGGCCA 2 cut(s) 405, 976
MluI ACGCGT 1 cut(s) 1236
MluNI TGGCCA 2 cut(s) 405, 976
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 2 cut(s) 1221, 1231
MnlI CCTC 8 cut(s) 57, 426, 793, 1076, 1269, 1440, 1444, 1490
Mox20I TGGCCA 2 cut(s) 405, 976
Mph1103I ATGCAT 3 cut(s) 79, 148, 1021
MroXI GAANNNNTTC 1 cut(s) 968
MscI TGGCCA 2 cut(s) 405, 976
MseI TTAA 6 cut(s) 153, 551, 767, 858, 1131, 1152
MslI CAYNNNNRTG 1 cut(s) 495
Msp20I TGGCCA 2 cut(s) 405, 976
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 3 cut(s) 214, 669, 1061
MspR9I CCNGG 2 cut(s) 610, 1260
MunI CAATTG 1 cut(s) 795
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 2 cut(s) 610, 1260
MvnI CGCG 1 cut(s) 1238
MwoI GCNNNNNNNGC 4 cut(s) 614, 623, 827, 1361
NcoI CCATGG 1 cut(s) 847
NdeI CATATG 2 cut(s) 593, 1096
NdeII GATC 5 cut(s) 13, 163, 652, 919, 1340
NlaIV GGNNCC 4 cut(s) 6, 15, 300, 1287
NmuCI GTSAC 3 cut(s) 157, 754, 790
NsiI ATGCAT 3 cut(s) 79, 148, 1021
NspI RCATGY 5 cut(s) 81, 505, 662, 1023, 1439
PaeI GCATGC 2 cut(s) 81, 1439
PciI ACATGT 1 cut(s) 501
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 968
PfeI GAWTC 5 cut(s) 191, 217, 289, 745, 853
Pfl23II CGTACG 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 373
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 131
PscI ACATGT 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 990
Psp6I CCWGG 2 cut(s) 608, 1258
PspGI CCWGG 2 cut(s) 608, 1258
PspLI CGTACG 1 cut(s) 335
PspN4I GGNNCC 4 cut(s) 6, 15, 300, 1287
PspPI GGNCC 4 cut(s) 4, 1063, 1213, 1330
PstNI CAGNNNCTG 2 cut(s) 827, 1399
PsuI RGATCY 2 cut(s) 13, 1340
RsaI GTAC 6 cut(s) 337, 590, 738, 843, 882, 1347
RsaNI GTAC 6 cut(s) 336, 589, 737, 842, 881, 1346
RseI CAYNNNNRTG 1 cut(s) 495
SacI GAGCTC 1 cut(s) 990
SaqAI TTAA 6 cut(s) 153, 551, 767, 858, 1131, 1152
Sau3AI GATC 5 cut(s) 13, 163, 652, 919, 1340
Sau96I GGNCC 4 cut(s) 4, 1063, 1213, 1330
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 610, 1260
SduI GDGCHC 3 cut(s) 990, 1288, 1430
SfaNI GCATC 9 cut(s) 133, 155, 269, 550, 613, 814, 1111, 1159, 1405
SinI GGWCC 4 cut(s) 4, 1063, 1213, 1330
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 3 cut(s) 513, 1151, 1489
SmoI CTYRAG 3 cut(s) 513, 1151, 1489
SphI GCATGC 2 cut(s) 81, 1439
SsiI CCGC 3 cut(s) 313, 618, 1362
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 2 cut(s) 608, 1258
StyI CCWWGG 3 cut(s) 316, 847, 1336
TaaI ACNGT 5 cut(s) 335, 841, 957, 1388, 1474
TaiI ACGT 1 cut(s) 133
TaqI TCGA 3 cut(s) 189, 249, 598
TatI WGTACW 1 cut(s) 1345
TauI GCSGC 2 cut(s) 315, 620
TfiI GAWTC 5 cut(s) 191, 217, 289, 745, 853
Tru1I TTAA 6 cut(s) 153, 551, 767, 858, 1131, 1152
Tru9I TTAA 6 cut(s) 153, 551, 767, 858, 1131, 1152
TscAI CASTG 2 cut(s) 166, 309
TseFI GTSAC 3 cut(s) 157, 754, 790
Tsp45I GTSAC 3 cut(s) 157, 754, 790
TspDTI ATGAA 3 cut(s) 209, 805, 951
TspGWI ACGGA 7 cut(s) 239, 413, 496, 576, 819, 1226, 1365
TspRI CASTG 2 cut(s) 166, 309
Van91I CCANNNNNTGG 1 cut(s) 373
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 4 cut(s) 4, 1063, 1213, 1330
XagI CCTNNNNNAGG 1 cut(s) 1448
XapI RAATTY 4 cut(s) 456, 966, 1009, 1219
XceI RCATGY 5 cut(s) 81, 505, 662, 1023, 1439
XmaJI CCTAGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 1071
XmnI GAANNNNTTC 1 cut(s) 968
XspI CTAG 1 cut(s) 317
Zsp2I ATGCAT 3 cut(s) 79, 148, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.