Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011767

Physical Location & Seq

Genomic Coordinates Reverse (-)

34807355 .. 34812636

Gene Structure 5282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG322800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGAGCATCATGGCTACATGGTGTTTGCAATGAGAATCCCTTGGCTCCACTTATACGCCGTCTAGGACTTACTTTATATCGTACTAGCGGCGACAACTCTGTGTTGTATGATCATGATTTGGAAAGCTTTGCGCTTTTCGATATGGACGGCAAACAAGTTCCTCAGCAGATGGTCGTTGAAGTTGGTGATATATTCAAGAGAATTCTCACTGAGACAGAGAAAGTAAGGAATGAACATACTGATGACATGTCTGTTCACCAAGCAATAATGATTGTCTTGAATAGGCATCCAGAGTTGAGACAGGAAGGACTTGCTCAAGCAGTGTTGCAATGGTACATGTGTCGAATGGAAGCATGGTTTGCTGCAGATGCAGATATGATATCACTGAAAAACTGGGATCAGGAGCATGTTCTCTCTGGTGGTCATGGACTTATGGTGGAAGGTTATGATCCCATAATAAAGACTCTTGCAAAAGATATCGATGTGCGGTTGAGTCACAGGGTCACAAAGATATCAAATGGTTGTAATAAGGTGATGCTCACAACTGAAGATGGCAGAAACTTCATTGCAGATGCGGCTATCATAACCGTACCTCTTGGGGTTCTTAAAGCCAAGTTGATCGAGTTCGAACCCACCTTACCAGAGTGGAAAATGTCTGCAATTTCTGATCTTGGGGTGGGCAATGAAAACAAAATTGCCTTACGATTTGATAAAGTTTTCTGGCCGAATGTAGAGCTATTAGGAGTTGTTGCACCTTCTTCCTATGGATGTGCTTATTTTCTCAATCTTCACAAGACAACGGGGCAACCAGTCCTCGTCTATATGTGTGCTGGAAGGTTTGCATATGACCTTGAAAATCTAGATGATGTTACTGCTGTTAAATTTGTGAATGATCAGCTCAAGAATATGTTACCCGAAGCAACTGAGCCGGTTCAATATCTTGTATCACATTGGGGAACAGACCTGAATTCCCTTGGATGTTACTCTTTGGATTTGGTTGGAAAGCCAGCAGATGTATACGAGAGGCTTCGAGCACCTTTGGGTAACCTTTTCTTTGGAGGGGAAGCTGTCAGCATGGATCATCAAGGATCTGTACATGGGGCTTATGCAGCAGGATTAATGGCAGCTGAAAACTGTCAGAATCATCTCTTGGAGAAACTTGGTAGATTGGAAAAGTTGCAGCGTGTTTATGTTGGCGATGAAGTGCTCGAAGCTATTGTTCCGCTGCAAATCTCAAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0042402 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046592 GO:0055114 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 map00330 map00410

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

415

Amino Acids

46.33

Weight (kDa)

5.2

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	1 - 379	5.6e-66	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65840
fragaria_vesca	FvH4_1g27430
malus_domestica	MD09G1280300.v1.1 MD17G1287500.v1.1
prunus_persica	Prupe.3G013800_v2.0.a1 Prupe.3G013800_v2.0.a1
pyrus_communis	pycom09g18840 pycom17g27050
rosa_chinensis	RchiOBHm_Chr3g0488611
rosa_laevigata	RLG00000022940
rosa_multiflora	Rmu_sc0005363.1_g000049
rosa_roxburghii	Rroxscaffold_6G00394100
rosa_rugosa	Rorug03G0239500 Rorug03G0239600
rosa_samantha	Rh3AG288500 Rh3BG325200 Rh3CG322800 Rh3DG321500
rosa_wichuraiana	Rw3G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1020
AciI	CCGC	4 cut(s)	90, 490, 578, 1226
AclWI	GGATC	4 cut(s)	408, 446, 1089, 1099
AcoI	YGGCCR	1 cut(s)	725
AcsI	RAATTY	3 cut(s)	204, 884, 970
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	4 cut(s)	85, 338, 594, 1098
AflIII	ACRYGT	2 cut(s)	249, 339
AgsI	TTSAA	5 cut(s)	182, 199, 283, 857, 938
AjuI	GAANNNNNNNTTGG	2 cut(s)	1136, 1168
AluBI	AGCT	6 cut(s)	129, 739, 901, 1070, 1130, 1217
AluI	AGCT	6 cut(s)	129, 739, 901, 1070, 1130, 1217
Alw21I	GWGCWC	2 cut(s)	1039, 1212
Alw26I	GTCTC	2 cut(s)	209, 295
AlwI	GGATC	4 cut(s)	408, 446, 1089, 1099
AoxI	GGCC	1 cut(s)	725
ApeKI	GCWGC	5 cut(s)	365, 1112, 1127, 1183, 1228
ApoI	RAATTY	3 cut(s)	204, 884, 970
AseI	ATTAAT	1 cut(s)	1121
AspLEI	GCGC	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	200, 251, 547
AsuII	TTCGAA	1 cut(s)	630
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
Bbv12I	GWGCWC	2 cut(s)	1039, 1212
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	5 cut(s)	352, 1124, 1139, 1195, 1215
BccI	CCATC	2 cut(s)	166, 548
BceAI	ACGGC	2 cut(s)	45, 166
BclI	TGATCA	2 cut(s)	112, 895
BcoDI	GTCTC	2 cut(s)	209, 295
BfaI	CTAG	3 cut(s)	65, 87, 863
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	7 cut(s)	91, 366, 579, 1113, 1128, 1184, 1229
BlsI	GCNGC	7 cut(s)	92, 367, 580, 1114, 1129, 1185, 1230
BmiI	GGNNCC	1 cut(s)	48
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	5 cut(s)	17, 298, 361, 528, 565
BmuI	ACTGGG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	3 cut(s)	303, 887, 1222
Bsa29I	ATCGAT	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	42, 976
Bse118I	RCCGGY	1 cut(s)	931
Bse1I	ACTGG	2 cut(s)	401, 812
Bse3DI	GCAATG	4 cut(s)	37, 338, 567, 691
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	42, 976
BseGI	GGATG	3 cut(s)	289, 776, 986
BseMI	GCAATG	4 cut(s)	37, 338, 567, 691
BseMII	CTCAG	3 cut(s)	179, 204, 918
BseNI	ACTGG	2 cut(s)	401, 812
BseXI	GCAGC	5 cut(s)	352, 1124, 1139, 1195, 1215
BshFI	GGCC	1 cut(s)	727
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	1039, 1212
BsiSI	CCGG	1 cut(s)	932
BsmAI	GTCTC	2 cut(s)	209, 295
BsnI	GGCC	1 cut(s)	727
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	1039, 1212
Bsp1407I	TGTACA	1 cut(s)	1096
Bsp143I	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
BspACI	CCGC	4 cut(s)	90, 490, 578, 1226
BspANI	GGCC	1 cut(s)	727
BspCNI	CTCAG	3 cut(s)	178, 205, 919
BspDI	ATCGAT	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	4 cut(s)	408, 446, 1089, 1099
BspT104I	TTCGAA	1 cut(s)	630
BsrDI	GCAATG	4 cut(s)	37, 338, 567, 691
BsrFI	RCCGGY	1 cut(s)	931
BsrGI	TGTACA	1 cut(s)	1096
BsrI	ACTGG	2 cut(s)	401, 812
BssAI	RCCGGY	1 cut(s)	931
BssECI	CCNNGG	2 cut(s)	42, 976
BssMI	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
BssNAI	GTATAC	1 cut(s)	1021
BssT1I	CCWWGG	2 cut(s)	42, 976
Bst1107I	GTATAC	1 cut(s)	1021
Bst4CI	ACNGT	2 cut(s)	592, 1139
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	1096
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	1011
BstDEI	CTNAG	3 cut(s)	165, 213, 927
BstEII	GGTNACC	1 cut(s)	1046
BstF5I	GGATG	3 cut(s)	289, 776, 986
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	8 cut(s)	115, 403, 454, 624, 673, 898, 1084, 1094
BstMAI	GTCTC	2 cut(s)	209, 295
BstMBI	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 371, 578, 1112
BstNSI	RCATGY	3 cut(s)	253, 343, 413
BstPI	GGTNACC	1 cut(s)	1046
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	352, 1124, 1139, 1195, 1215
BstX2I	RGATCY	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	1091
BstZ17I	GTATAC	1 cut(s)	1021
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	727
BsuTUI	ATCGAT	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	1215
BtsCI	GGATG	3 cut(s)	289, 776, 986
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	210, 330, 386
Cac8I	GCNNGC	1 cut(s)	1011
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	931
ClaI	ATCGAT	1 cut(s)	483
Csp6I	GTAC	4 cut(s)	84, 337, 593, 1097
CviQI	GTAC	4 cut(s)	84, 337, 593, 1097
DdeI	CTNAG	3 cut(s)	165, 213, 927
DpnI	GATC	8 cut(s)	114, 402, 453, 623, 672, 897, 1083, 1093
DpnII	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
EaeI	YGGCCR	1 cut(s)	725
Eco130I	CCWWGG	2 cut(s)	42, 976
Eco32I	GATATC	3 cut(s)	384, 481, 516
Eco57I	CTGAAG	1 cut(s)	570
Eco91I	GGTNACC	1 cut(s)	1046
EcoO65I	GGTNACC	1 cut(s)	1046
EcoRI	GAATTC	2 cut(s)	204, 970
EcoRV	GATATC	3 cut(s)	384, 481, 516
EcoT14I	CCWWGG	2 cut(s)	42, 976
ErhI	CCWWGG	2 cut(s)	42, 976
FauNDI	CATATG	1 cut(s)	847
FbaI	TGATCA	2 cut(s)	112, 895
FblI	GTMKAC	1 cut(s)	1020
Fnu4HI	GCNGC	7 cut(s)	91, 366, 579, 1113, 1128, 1184, 1229
FokI	GGATG	3 cut(s)	276, 783, 993
Fsp4HI	GCNGC	7 cut(s)	91, 366, 579, 1113, 1128, 1184, 1229
FspBI	CTAG	3 cut(s)	65, 87, 863
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	7 cut(s)	91, 366, 579, 1113, 1128, 1184, 1229
HaeIII	GGCC	1 cut(s)	727
HapII	CCGG	1 cut(s)	932
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	4 cut(s)	37, 466, 496, 1144
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	3 cut(s)	200, 251, 547
Hpy166II	GTNNAC	2 cut(s)	259, 1021
Hpy188I	TCNGA	2 cut(s)	670, 1143
Hpy188III	TCNNGA	7 cut(s)	116, 199, 280, 293, 404, 863, 904
Hpy8I	GTNNAC	2 cut(s)	259, 1021
HpyAV	CCTTC	4 cut(s)	302, 437, 768, 831
HpyCH4III	ACNGT	2 cut(s)	592, 1139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 371, 578, 1112
HpyF3I	CTNAG	3 cut(s)	165, 213, 927
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	2 cut(s)	112, 895
Kzo9I	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
LmnI	GCTCC	3 cut(s)	5, 52, 406
Lsp1109I	GCAGC	5 cut(s)	352, 1124, 1139, 1195, 1215
LweI	GCATC	5 cut(s)	17, 298, 361, 528, 565
MaeI	CTAG	3 cut(s)	65, 87, 863
MaeIII	GTNAC	6 cut(s)	497, 505, 871, 912, 983, 1046
MalI	GATC	8 cut(s)	114, 402, 453, 623, 672, 897, 1083, 1093
MboI	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
MboII	GAAGA	3 cut(s)	563, 753, 782
MflI	RGATCY	1 cut(s)	1091
MhlI	GDGCHC	2 cut(s)	1039, 1212
MluCI	AATT	5 cut(s)	204, 663, 696, 884, 970
MlyI	GAGTC	2 cut(s)	460, 505
MmeI	TCCRAC	1 cut(s)	982
MnlI	CCTC	5 cut(s)	174, 606, 827, 1020, 1055
MseI	TTAA	3 cut(s)	609, 882, 1121
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	1130, 1228
MspI	CCGG	1 cut(s)	932
MwoI	GCNNNNNNNGC	4 cut(s)	362, 371, 578, 1112
NdeI	CATATG	1 cut(s)	847
NdeII	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	497, 505
NspI	RCATGY	3 cut(s)	253, 343, 413
NspV	TTCGAA	1 cut(s)	630
PagI	TCATGA	1 cut(s)	115
PciI	ACATGT	2 cut(s)	249, 339
PfeI	GAWTC	2 cut(s)	37, 1144
PkrI	GCNGC	7 cut(s)	92, 367, 580, 1114, 1129, 1185, 1230
PleI	GAGTC	2 cut(s)	460, 504
PpsI	GAGTC	2 cut(s)	460, 504
PscI	ACATGT	2 cut(s)	249, 339
PshBI	ATTAAT	1 cut(s)	1121
PspEI	GGTNACC	1 cut(s)	1046
PspN4I	GGNNCC	1 cut(s)	48
PsrI	GAACNNNNNNTAC	2 cut(s)	624, 656
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	1091
PvuII	CAGCTG	1 cut(s)	1130
RsaI	GTAC	4 cut(s)	85, 338, 594, 1098
RsaNI	GTAC	4 cut(s)	84, 337, 593, 1097
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	609, 882, 1121
SatI	GCNGC	7 cut(s)	91, 366, 579, 1113, 1128, 1184, 1229
Sau3AI	GATC	8 cut(s)	112, 400, 451, 621, 670, 895, 1081, 1091
SchI	GAGTC	2 cut(s)	460, 505
SduI	GDGCHC	2 cut(s)	1039, 1212
SfaNI	GCATC	5 cut(s)	17, 298, 361, 528, 565
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	3 cut(s)	318, 902, 1237
SmoI	CTYRAG	3 cut(s)	318, 902, 1237
Sse9I	AATT	5 cut(s)	204, 663, 696, 884, 970
SsiI	CCGC	4 cut(s)	90, 490, 578, 1226
SspMI	CTAG	3 cut(s)	65, 87, 863
StyI	CCWWGG	2 cut(s)	42, 976
TaaI	ACNGT	2 cut(s)	592, 1139
TaqI	TCGA	7 cut(s)	141, 346, 483, 624, 630, 1033, 1212
TasI	AATT	5 cut(s)	204, 663, 696, 884, 970
TatI	WGTACW	1 cut(s)	1096
TauI	GCSGC	2 cut(s)	93, 581
TfiI	GAWTC	2 cut(s)	37, 1144
Tru1I	TTAA	3 cut(s)	609, 882, 1121
Tru9I	TTAA	3 cut(s)	609, 882, 1121
TscAI	CASTG	3 cut(s)	217, 330, 393
TseFI	GTSAC	2 cut(s)	497, 505
TseI	GCWGC	5 cut(s)	365, 1112, 1127, 1183, 1228
Tsp45I	GTSAC	2 cut(s)	497, 505
TspDTI	ATGAA	4 cut(s)	249, 556, 702, 1218
TspRI	CASTG	3 cut(s)	217, 330, 393
VspI	ATTAAT	1 cut(s)	1121
XapI	RAATTY	3 cut(s)	204, 884, 970
XbaI	TCTAGA	1 cut(s)	862
XceI	RCATGY	3 cut(s)	253, 343, 413
XmiI	GTMKAC	1 cut(s)	1020
XspI	CTAG	3 cut(s)	65, 87, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.