Rorug03G0239500

Polyamine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011767
Physical Location & Seq
Reverse (-)
22375746 .. 22377767
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0239500.1

Sequence Viewer

Length: 1107 bp
ATGGAAAGAGTGGAAGAGAAGCTCAACTTTTACCACTTTAGCCATGAACATTCACTAGAGCAAACCAATTCACCTCCCAAGCAAAACAATACATGTGCAGGCTGCAATCTGATGATACTCCCCGGTAAGGACTACTACAGCTGCAGAAAATGCCCATTTTTCCTACACCAAGTTTGCTACAATATGCCTCGAAAAACTCGCCACCCGGCACATCCAAACCACTATTTGAATCTCCATGCTTCACCTTCAAGCAAAGGAGCTATAAATTGCAAGGCTTGTGGAAAGCATGTTGCCGGCTTTTACTATCATTGTGCGGAATGTGGCCTCTACTACCATAGCTTGTGCTCCATCCTGCCTTTCTCTATTGCAACTTCATCACACCCTCACGCGTTAAAATTGTCATTTTTGCCCCCCTGCGATTTGTGCTGCGATATCTGCAGTGAGCCTCCTTATGATGGATGGCTCTATAGGTGTCACATATGTGAGTTTGATGCTCATCTTTCTTGTGGCATTTCTGATCAAAAACTTCTTGACAGTTCTCAAAGTTACAATATTGAAGGCAAGGAGCTATTGCAGTTGGTAAGGCATGGATTTGTAAGAAGTGGATCACATCAGATTACAGAAGCAAACATGCCCGATACCATCGCTCAGAACCCAAGACCACAATTTTTGTATCGAGATTCATCAGCTCCTGTCTCTGAAGACACGACTCTGACTCCGAGTAATCAATTTAGTGATGCATATTTTTCCATAGATTTGGCCAAGTCCTATTCTAATTCACCCATTGCTCAGAAAAACGAAGGGAGGAAAGAAAGTGGTCATCAAGGTCCAAATGGTACTGCTGAATTAGTCCAAGGAACATTTCAGTCCAGCAAGGTCAGCAATAAAGTAGGACCAGAAAACAAAATGAATGAAGCATTCTTGACTCGAAGTGACACACTTACCAGGAAGGAATTAGGCCCAGAGAAGAAGAGAAAACCAAGTGAAACCATGGGGAGGTCAAACATCGGAAATCAGAGTACTAAATCGGATACTCAAGAGTCAAGCGTTTCATTTTTCCAGATGCTCTCTGGGTGCTGCAATCCGGGATATGAAAGAAATATCTGA

Protein Analysis

368

Amino Acids

41.22

Weight (kDa)

7.53

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 13 - 59 1.9e-08 C1 domain
C1_2 PF03107 70 - 115 3.5e-08 C1 domain
C1_2 PF03107 126 - 169 1.3e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65840
fragaria_vesca FvH4_1g27430
malus_domestica MD09G1280300.v1.1 MD17G1287500.v1.1
prunus_persica Prupe.3G013800_v2.0.a1 Prupe.3G013800_v2.0.a1
pyrus_communis pycom09g18840 pycom17g27050
rosa_chinensis RchiOBHm_Chr3g0488611
rosa_laevigata RLG00000022940
rosa_multiflora Rmu_sc0005363.1_g000049
rosa_roxburghii Rroxscaffold_6G00394100
rosa_rugosa Rorug03G0239500 Rorug03G0239600
rosa_samantha Rh3AG288500 Rh3BG325200 Rh3CG322800 Rh3DG321500
rosa_wichuraiana Rw3G025530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 389
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 613
AcoI YGGCCR 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 2 cut(s) 838, 1021
AfiI CCNNNNNNNGG 3 cut(s) 127, 455, 996
AflIII ACRYGT 2 cut(s) 92, 387
AgsI TTSAA 3 cut(s) 229, 249, 557
AjnI CCWGG 1 cut(s) 944
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 6 cut(s) 22, 141, 260, 339, 568, 689
AluI AGCT 6 cut(s) 22, 141, 260, 339, 568, 689
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 700
AlwI GGATC 1 cut(s) 613
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 3 cut(s) 322, 759, 958
ApeKI GCWGC 4 cut(s) 102, 141, 426, 1077
AspS9I GGNCC 3 cut(s) 827, 893, 959
AsuC2I CCSGG 3 cut(s) 123, 206, 1086
AsuHPI GGTGA 3 cut(s) 63, 234, 771
AvaII GGWCC 2 cut(s) 827, 893
BalI TGGCCA 1 cut(s) 761
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 4 cut(s) 89, 128, 413, 1064
BccI CCATC 4 cut(s) 356, 449, 453, 650
BciT130I CCWGG 1 cut(s) 946
BciVI GTATCC 1 cut(s) 1024
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 3 cut(s) 123, 206, 1086
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 4 cut(s) 136, 142, 436, 466
BfuI GTATCC 1 cut(s) 1024
BisI GCNGC 4 cut(s) 103, 142, 427, 1078
BlsI GCNGC 4 cut(s) 104, 143, 428, 1079
BmcAI AGTACT 1 cut(s) 1021
Bme1390I CCNGG 4 cut(s) 123, 206, 946, 1086
Bme18I GGWCC 2 cut(s) 827, 893
BmgT120I GGNCC 3 cut(s) 827, 893, 959
BmrFI CCNGG 4 cut(s) 123, 206, 946, 1086
BmsI GCATC 3 cut(s) 481, 727, 1053
BpiI GAAGAC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 1020
BpuMI CCSGG 3 cut(s) 123, 206, 1086
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 121, 853, 990
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 455, 996
Bse118I RCCGGY 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 783
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 1 cut(s) 946
BseDI CCNNGG 3 cut(s) 121, 853, 990
BseGI GGATG 3 cut(s) 211, 348, 464
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 3 cut(s) 127, 455, 996
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 662, 803
BseXI GCAGC 4 cut(s) 89, 128, 413, 1064
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 3 cut(s) 324, 761, 960
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 4 cut(s) 123, 206, 294, 1085
BslI CCNNNNNNNGG 3 cut(s) 127, 455, 996
BsmAI GTCTC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 917
BsnI GGCC 3 cut(s) 324, 761, 960
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 2 cut(s) 517, 605
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 1 cut(s) 314
BspANI GGCC 3 cut(s) 324, 761, 960
BspCNI CTCAG 2 cut(s) 661, 802
BspFNI CGCG 1 cut(s) 389
BspMAI CTGCAG 2 cut(s) 146, 440
BspPI GGATC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 783
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 121, 853, 990
BssMI GATC 2 cut(s) 517, 605
BssT1I CCWWGG 2 cut(s) 853, 990
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 9, 965
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 100, 295
BstDEI CTNAG 2 cut(s) 648, 789
BstDSI CCRYGG 1 cut(s) 990
BstF5I GGATG 3 cut(s) 211, 348, 464
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 2 cut(s) 520, 608
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 2 cut(s) 517, 605
BstMWI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
BstNI CCWGG 1 cut(s) 946
BstNSI RCATGY 3 cut(s) 96, 290, 634
BstSCI CCNGG 4 cut(s) 121, 204, 944, 1084
BstSFI CTRYAG 4 cut(s) 136, 142, 436, 466
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 4 cut(s) 89, 128, 413, 1064
BstV2I GAAGAC 1 cut(s) 708
BstXI CCANNNNNNTGG 1 cut(s) 757
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 3 cut(s) 324, 761, 960
BtgI CCRYGG 1 cut(s) 990
BtgZI GCGATG 1 cut(s) 628
BtsCI GGATG 3 cut(s) 211, 348, 464
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 100, 295
CaiI CAGNNNCTG 1 cut(s) 692
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 827, 893, 959
Csp6I GTAC 2 cut(s) 837, 1020
CspCI CAANNNNNGTGG 4 cut(s) 259, 294, 651, 686
CviAII CATG 7 cut(s) 44, 93, 236, 287, 587, 631, 991
CviQI GTAC 2 cut(s) 837, 1020
DdeI CTNAG 2 cut(s) 648, 789
DpnI GATC 2 cut(s) 519, 607
DpnII GATC 2 cut(s) 517, 605
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 2 cut(s) 9, 965
EarI CTCTTC 2 cut(s) 9, 965
Eco130I CCWWGG 2 cut(s) 853, 990
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 827, 893
Eco57I CTGAAG 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 944
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 853, 990
EcoT22I ATGCAT 1 cut(s) 742
ErhI CCWWGG 2 cut(s) 853, 990
FaeI CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 7 cut(s) 43, 92, 235, 286, 586, 630, 990
FauNDI CATATG 1 cut(s) 479
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 4 cut(s) 103, 142, 427, 1078
FokI GGATG 3 cut(s) 198, 335, 471
Fsp4HI GCNGC 4 cut(s) 103, 142, 427, 1078
FspBI CTAG 1 cut(s) 56
GluI GCNGC 4 cut(s) 103, 142, 427, 1078
HaeIII GGCC 3 cut(s) 324, 761, 960
HapII CCGG 4 cut(s) 123, 206, 294, 1085
Hin1II CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
HinfI GANTC 6 cut(s) 229, 680, 709, 715, 925, 1040
HpaII CCGG 4 cut(s) 123, 206, 294, 1085
HphI GGTGA 3 cut(s) 63, 234, 771
Hpy188III TCNNGA 5 cut(s) 530, 677, 922, 1037, 1060
HpyAV CCTTC 4 cut(s) 255, 551, 794, 943
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4V TGCA 9 cut(s) 98, 105, 144, 270, 368, 438, 574, 740, 1080
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
HpyF3I CTNAG 2 cut(s) 648, 789
Hsp92II CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 517, 605
LmnI GCTCC 4 cut(s) 257, 350, 565, 694
Lsp1109I GCAGC 4 cut(s) 89, 128, 413, 1064
LweI GCATC 3 cut(s) 481, 727, 1053
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 3 cut(s) 473, 545, 932
MalI GATC 2 cut(s) 519, 607
MboI GATC 2 cut(s) 517, 605
MboII GAAGA 4 cut(s) 26, 713, 979, 982
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 761
MluCI AATT 8 cut(s) 67, 265, 395, 665, 728, 775, 845, 953
MluI ACGCGT 1 cut(s) 387
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 4 cut(s) 703, 709, 919, 1049
MnlI CCTC 7 cut(s) 84, 198, 335, 393, 456, 798, 990
Mox20I TGGCCA 1 cut(s) 761
Mph1103I ATGCAT 1 cut(s) 742
MroNI GCCGGC 1 cut(s) 293
MscI TGGCCA 1 cut(s) 761
MseI TTAA 1 cut(s) 392
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 123, 206, 294, 1085
MspR9I CCNGG 4 cut(s) 123, 206, 946, 1086
Mva1269I GAATGC 1 cut(s) 917
MvaI CCWGG 1 cut(s) 946
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
NaeI GCCGGC 1 cut(s) 295
NciI CCSGG 3 cut(s) 123, 206, 1086
NcoI CCATGG 1 cut(s) 990
NdeI CATATG 1 cut(s) 479
NdeII GATC 2 cut(s) 517, 605
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
NmuCI GTSAC 2 cut(s) 473, 932
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 3 cut(s) 96, 290, 634
OliI CACNNNNGTG 1 cut(s) 480
PciI ACATGT 1 cut(s) 92
PctI GAATGC 1 cut(s) 917
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 229, 680
PfoI TCCNGGA 1 cut(s) 1084
PkrI GCNGC 4 cut(s) 104, 143, 428, 1079
PleI GAGTC 4 cut(s) 703, 709, 919, 1048
PpsI GAGTC 4 cut(s) 703, 709, 919, 1048
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 944
PspGI CCWGG 1 cut(s) 944
PspPI GGNCC 3 cut(s) 827, 893, 959
PstI CTGCAG 2 cut(s) 146, 440
PstNI CAGNNNCTG 1 cut(s) 692
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 2 cut(s) 838, 1021
RsaNI GTAC 2 cut(s) 837, 1020
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 4 cut(s) 103, 142, 427, 1078
Sau3AI GATC 2 cut(s) 517, 605
Sau96I GGNCC 3 cut(s) 827, 893, 959
ScaI AGTACT 1 cut(s) 1021
SchI GAGTC 4 cut(s) 703, 709, 919, 1049
ScrFI CCNGG 4 cut(s) 123, 206, 946, 1086
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 3 cut(s) 481, 727, 1053
SfcI CTRYAG 4 cut(s) 136, 142, 436, 466
SinI GGWCC 2 cut(s) 827, 893
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 1035
SmoI CTYRAG 1 cut(s) 1035
Sse9I AATT 8 cut(s) 67, 265, 395, 665, 728, 775, 845, 953
SsiI CCGC 1 cut(s) 314
SspI AATATT 1 cut(s) 553
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 4 cut(s) 121, 204, 944, 1084
StyI CCWWGG 2 cut(s) 853, 990
TaaI ACNGT 1 cut(s) 536
TaqI TCGA 3 cut(s) 190, 676, 928
TasI AATT 8 cut(s) 67, 265, 395, 665, 728, 775, 845, 953
TatI WGTACW 1 cut(s) 1019
TfiI GAWTC 2 cut(s) 229, 680
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 473, 932
TseI GCWGC 4 cut(s) 102, 141, 426, 1077
Tsp45I GTSAC 2 cut(s) 473, 932
TspDTI ATGAA 7 cut(s) 60, 363, 672, 923, 927, 1041, 1107
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 827, 893
XceI RCATGY 3 cut(s) 96, 290, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 1067
XspI CTAG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 1021
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.