Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015795

Physical Location & Seq

Genomic Coordinates Reverse (-)

24770419 .. 24771393

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCGAAGAACGTTTCGAGAAACTGCTTAGGATCAATGGAAGACATCAAGAAAGTATTCCAACGATTCGACAAAAACAACGATGGGAAAATCTCTATCGATGAGCTTAAAGACGTGATAGGAGCTCTCTCTCCAAACGCTTCACAAGAAGAAACCAAAGCAATGATGAAAGAGTTTGATCTTGACGGTAATGGTTTCATTGATTTGGATGAGTTTGTTGCTTTGTTTCAAATCAGTGATCAAAGTAGCAACAATAGTGCGATTAGAGATTTGAAAGAAGCTTTTGATTTGTATGATTTGGATCGTAATGGAAGGATCTCGGCTAATGAGTTACACTCGGTTATGAAGAATCTTGGTGAGAAGTGTTCGATTCAAGATTGTCAAAGGATGATTAATAAAGTTGATTCTGATGGTGATGGTTGTGTTGATTTTGAAGAGTTTAAGAAGATGATGATGATTAATGGTAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0001505 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009416 GO:0009605 GO:0009612 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009909 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0016020 GO:0019222 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043169 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051592 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0080164 GO:0097305 GO:1901700 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

157

Amino Acids

17.65

Weight (kDa)

4.58

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	14 - 77	2.7e-16	EF-hand domain pair
EF-hand_1	PF00036	15 - 40	2.3e-08	EF hand domain
EF-hand_6	PF13405	15 - 42	1.2e-07	EF-hand domain
EF-hand_5	PF13202	16 - 39	7.2e-08	EF hand
EF-hand_1	PF00036	51 - 76	6.4e-08	EF hand domain
EF-hand_1	PF00036	90 - 118	1.8e-07	EF hand domain
EF-hand_7	PF13499	90 - 152	1.6e-17	EF-hand domain pair
EF-hand_6	PF13405	90 - 119	5.4e-08	EF-hand domain
EF-hand_8	PF13833	104 - 151	8.2e-08	EF-hand domain pair
EF-hand_1	PF00036	126 - 152	5.4e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66400
fragaria_vesca	FvH4_4g33640 FvH4_4g33721 FvH4_6g16340
rosa_chinensis	RchiOBHm_Chr4g0443101
rosa_laevigata	RLG00000005953
rosa_multiflora	Rmu_sc0007968.1_g000015 Rmu_sc0008069.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383730
rosa_rugosa	Rorug04G0344400
rosa_samantha	Rh3AG156900 Rh4BG410300 Rh4CG425900 Rh4DG405300
rosa_wichuraiana	Rw4G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	3 cut(s)	40, 309, 323
AgsI	TTSAA	4 cut(s)	230, 274, 374, 434
AjiI	CACGTC	1 cut(s)	115
AluBI	AGCT	3 cut(s)	106, 125, 281
AluI	AGCT	3 cut(s)	106, 125, 281
Alw21I	GWGCWC	1 cut(s)	127
AlwI	GGATC	3 cut(s)	40, 309, 323
AseI	ATTAAT	2 cut(s)	393, 459
Asp700I	GAANNNNTTC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	368, 425
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	3 cut(s)	77, 404, 410
BclI	TGATCA	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu10I	CCTNAGC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	99
BseGI	GGATG	2 cut(s)	214, 393
BseJI	GATNNNNATC	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	168
BshVI	ATCGAT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	5 cut(s)	32, 178, 238, 301, 315
BspDI	ATCGAT	1 cut(s)	99
BspPI	GGATC	3 cut(s)	40, 309, 323
BsrDI	GCAATG	1 cut(s)	168
BssMI	GATC	5 cut(s)	32, 178, 238, 301, 315
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	214, 393
BstKTI	GATC	5 cut(s)	35, 181, 241, 304, 318
BstMBI	GATC	5 cut(s)	32, 178, 238, 301, 315
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
Bsu15I	ATCGAT	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	214, 393
BtsIMutI	CAGTG	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	99
CviJI	RGCY	4 cut(s)	106, 125, 281, 323
CviKI_1	RGCY	4 cut(s)	106, 125, 281, 323
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	5 cut(s)	34, 180, 240, 303, 317
DpnII	GATC	5 cut(s)	32, 178, 238, 301, 315
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	127
FaiI	YATR	2 cut(s)	294, 344
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	2 cut(s)	221, 400
FriOI	GRGCYC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	4 cut(s)	66, 349, 370, 404
HphI	GGTGA	2 cut(s)	368, 425
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	4 cut(s)	18, 49, 182, 374
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	12, 114
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	2 cut(s)	12, 114
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	32, 178, 238, 301, 315
LmnI	GCTCC	1 cut(s)	122
MaeII	ACGT	2 cut(s)	12, 114
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	5 cut(s)	34, 180, 240, 303, 317
MboI	GATC	5 cut(s)	32, 178, 238, 301, 315
MboII	GAAGA	6 cut(s)	19, 53, 161, 358, 446, 457
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	4 cut(s)	108, 393, 441, 459
NdeII	GATC	5 cut(s)	32, 178, 238, 301, 315
NmeAIII	GCCGAG	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	66, 349, 370, 404
PshBI	ATTAAT	2 cut(s)	393, 459
Psp124BI	GAGCTC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	127
SaqAI	TTAA	4 cut(s)	108, 393, 441, 459
Sau3AI	GATC	5 cut(s)	32, 178, 238, 301, 315
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	5 cut(s)	15, 108, 117, 127, 283
SgeI	CNNG	9 cut(s)	30, 61, 127, 158, 194, 331, 349, 365, 386
SstI	GAGCTC	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	15, 117
TaqI	TCGA	5 cut(s)	5, 17, 69, 99, 368
TfiI	GAWTC	4 cut(s)	66, 349, 370, 404
Tru1I	TTAA	4 cut(s)	108, 393, 441, 459
Tru9I	TTAA	4 cut(s)	108, 393, 441, 459
TscAI	CASTG	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	182, 187, 359
TspRI	CASTG	1 cut(s)	241
VspI	ATTAAT	2 cut(s)	393, 459
XmnI	GAANNNNTTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.