Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015795

Physical Location & Seq

Genomic Coordinates Reverse (-)

31844142 .. 31845023

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33721.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCCGATTCCCCGAAACCAATCAATCTCGATGAGTCGCAGCTGGTACTTCACCAGCAAAGAGTTGGAGCACAACTCCCCGTCTCGCCGGGACAGCATCACCGTCGTCAAAGAGTCCAAACTCCGGTCTCTATACTGCTCCCACATTCAGAAGGTGGGTCAGAATTTGAGACTGCCTCACTTGACCATAGCCACTGCAATGATGCTGTGCCACCGCTTCTACGCACGTCAGTCTCACGCCAAGAACTGCTGGCACACTGTGGCCTCAGCCTGCGTTCTTCTAGCCAGCAAAGTCCAGGACACGCCTCGATCCCTCAAGGACGTCGTGTACGTGGTTTACGGCCAAGAGATACAATACCAGATCAATGAGATGATGAAGAATTACCAGATCAAACACCCTCACGACGTTACAAAATGTGACGAGTATGCCATAAAGATAGTTGAGCTTTTGAAGAGGGATAAGAGAGAGCTCATCGCAAAGGCGGAGCGGCTAGTGCTGAAGACGATCGGGTTCGATCTTGACATTGAGCTTCCTTTCAAGGCCCTCGCGGCGGCGCTGAAGAGGTTGACGAGTGATGTAGTCCCCCGCCTGGCTGAGGTGGCGTGGAGCCTTGTGGAGGAGTGGCTCAAGACATCACTATGCTTGCAGTACAAGCCAAAATACATTGCGGTTGGGTCAGTTGTTGTCGCTGCTAGGGTTTTGAATGTGAAGCTACCCGCGGGTGAGAAGTGGCTCGAGGAGCTCGGTGTTTTGCCGGAGGTGTTGGATGAGGTCGTTCGCTGGATGCAAAATAGCAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

268

Amino Acids

30.66

Weight (kDa)

9.34

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	20 - 126	6.6e-16	Cyclin, N-terminal domain
TFIIB	PF00382	46 - 118	2e-06	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66400
fragaria_vesca	FvH4_4g33640 FvH4_4g33721 FvH4_6g16340
rosa_chinensis	RchiOBHm_Chr4g0443101
rosa_laevigata	RLG00000005953
rosa_multiflora	Rmu_sc0007968.1_g000015 Rmu_sc0008069.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383730
rosa_rugosa	Rorug04G0344400
rosa_samantha	Rh3AG156900 Rh4BG410300 Rh4CG425900 Rh4DG405300
rosa_wichuraiana	Rw4G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccBSI	CCGCTC	1 cut(s)	487
AccII	CGCG	2 cut(s)	548, 719
AciI	CCGC	9 cut(s)	214, 482, 487, 548, 551, 586, 668, 717, 719
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	2 cut(s)	518, 578
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	3 cut(s)	47, 329, 650
AfiI	CCNNNNNNNGG	5 cut(s)	123, 550, 589, 595, 616
AgsI	TTSAA	3 cut(s)	451, 538, 703
AjiI	CACGTC	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	294, 588
AluBI	AGCT	6 cut(s)	42, 445, 469, 529, 712, 742
AluI	AGCT	6 cut(s)	42, 445, 469, 529, 712, 742
Alw21I	GWGCWC	3 cut(s)	72, 471, 744
Alw26I	GTCTC	4 cut(s)	87, 132, 163, 237
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	4 cut(s)	261, 340, 540, 798
ApeKI	GCWGC	2 cut(s)	39, 689
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	541
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	43, 91, 734
AvaI	CYCGRG	1 cut(s)	734
BanII	GRGCYC	2 cut(s)	471, 744
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	3 cut(s)	72, 471, 744
BbvCI	CCTCAGC	2 cut(s)	265, 594
BbvI	GCAGC	2 cut(s)	51, 676
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	2 cut(s)	296, 590
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	4 cut(s)	87, 132, 163, 237
BfaI	CTAG	3 cut(s)	281, 491, 693
BfoI	RGCGCY	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	548
BisI	GCNGC	5 cut(s)	40, 488, 549, 552, 690
BlsI	GCNGC	5 cut(s)	41, 489, 550, 553, 691
Bme1390I	CCNGG	3 cut(s)	89, 296, 590
BmeT110I	CYCGRG	1 cut(s)	734
BmgBI	CACGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	608
BmrFI	CCNGG	3 cut(s)	89, 296, 590
BmsI	GCATC	3 cut(s)	105, 192, 774
BpiI	GAAGAC	1 cut(s)	506
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 160, 192
Bpu10I	CCTNAGC	2 cut(s)	265, 594
BpuEI	CTTGAG	2 cut(s)	299, 611
BpuMI	CCSGG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 550, 589, 595, 616
Bse3DI	GCAATG	2 cut(s)	204, 663
BseBI	CCWGG	2 cut(s)	296, 590
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	2 cut(s)	772, 789
BseLI	CCNNNNNNNGG	5 cut(s)	123, 550, 589, 595, 616
BseMI	GCAATG	2 cut(s)	204, 663
BseMII	CTCAG	2 cut(s)	279, 585
BseRI	GAGGAG	2 cut(s)	632, 752
BseXI	GCAGC	2 cut(s)	51, 676
Bsh1236I	CGCG	2 cut(s)	548, 719
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	4 cut(s)	263, 342, 542, 800
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	3 cut(s)	72, 471, 744
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	3 cut(s)	88, 124, 755
BslFI	GGGAC	2 cut(s)	104, 566
BslI	CCNNNNNNNGG	5 cut(s)	123, 550, 589, 595, 616
BsmAI	GTCTC	4 cut(s)	87, 132, 163, 237
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	2 cut(s)	104, 566
BsnI	GGCC	4 cut(s)	263, 342, 542, 800
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	3 cut(s)	72, 471, 744
Bsp143I	GATC	5 cut(s)	308, 360, 387, 504, 514
BspACI	CCGC	9 cut(s)	214, 482, 487, 548, 551, 586, 668, 717, 719
BspANI	GGCC	4 cut(s)	263, 342, 542, 800
BspCNI	CTCAG	2 cut(s)	278, 586
BspFNI	CGCG	2 cut(s)	548, 719
BspLI	GGNNCC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	132
BsrBI	CCGCTC	1 cut(s)	487
BsrDI	GCAATG	2 cut(s)	204, 663
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	5 cut(s)	308, 360, 387, 504, 514
BssNI	GRCGYC	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	296, 590
Bst4CI	ACNGT	2 cut(s)	103, 259
Bst6I	CTCTTC	2 cut(s)	446, 554
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	4 cut(s)	251, 271, 286, 644
BstDEI	CTNAG	2 cut(s)	265, 594
BstDSI	CCRYGG	1 cut(s)	717
BstENI	CCTNNNNNAGG	2 cut(s)	593, 614
BstF5I	GGATG	2 cut(s)	772, 789
BstFNI	CGCG	2 cut(s)	548, 719
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	5 cut(s)	311, 363, 390, 507, 517
BstMAI	GTCTC	4 cut(s)	87, 132, 163, 237
BstMBI	GATC	5 cut(s)	308, 360, 387, 504, 514
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 493, 548, 599, 652, 739
BstNI	CCWGG	2 cut(s)	296, 590
BstSCI	CCNGG	3 cut(s)	87, 294, 588
BstUI	CGCG	2 cut(s)	548, 719
BstV1I	GCAGC	2 cut(s)	51, 676
BstV2I	GAAGAC	1 cut(s)	506
BsuRI	GGCC	4 cut(s)	263, 342, 542, 800
BtgI	CCRYGG	1 cut(s)	717
BtgZI	GCGATG	1 cut(s)	457
BtrI	CACGTC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	772, 789
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 255
Cac8I	GCNNGC	4 cut(s)	251, 271, 286, 644
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	541
Cfr42I	CCGCGG	1 cut(s)	720
Csp6I	GTAC	3 cut(s)	46, 328, 649
CviQI	GTAC	3 cut(s)	46, 328, 649
DdeI	CTNAG	2 cut(s)	265, 594
DpnI	GATC	5 cut(s)	310, 362, 389, 506, 516
DpnII	GATC	5 cut(s)	308, 360, 387, 504, 514
DraIII	CACNNNGTG	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	446, 554
EarI	CTCTTC	2 cut(s)	446, 554
EciI	GGCGGA	1 cut(s)	497
Ecl136II	GAGCTC	2 cut(s)	469, 742
Eco147I	AGGCCT	1 cut(s)	800
Eco24I	GRGCYC	2 cut(s)	471, 744
Eco31I	GGTCTC	1 cut(s)	132
Eco53kI	GAGCTC	2 cut(s)	469, 742
Eco57I	CTGAAG	2 cut(s)	518, 578
Eco88I	CYCGRG	1 cut(s)	734
EcoICRI	GAGCTC	2 cut(s)	469, 742
EcoNI	CCTNNNNNAGG	2 cut(s)	593, 614
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	294, 588
EcoT38I	GRGCYC	2 cut(s)	471, 744
Esp3I	CGTCTC	1 cut(s)	87
FaiI	YATR	5 cut(s)	133, 188, 426, 431, 640
FaqI	GGGAC	2 cut(s)	104, 566
FauI	CCCGC	3 cut(s)	593, 712, 724
Fnu4HI	GCNGC	5 cut(s)	40, 488, 549, 552, 690
FokI	GGATG	2 cut(s)	779, 796
FriOI	GRGCYC	2 cut(s)	471, 744
Fsp4HI	GCNGC	5 cut(s)	40, 488, 549, 552, 690
FspBI	CTAG	3 cut(s)	281, 491, 693
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	5 cut(s)	40, 488, 549, 552, 690
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	4 cut(s)	263, 342, 542, 800
HapII	CCGG	3 cut(s)	88, 124, 755
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	3 cut(s)	7, 34, 113
HpaII	CCGG	3 cut(s)	88, 124, 755
HphI	GGTGA	3 cut(s)	43, 91, 734
Hpy166II	GTNNAC	3 cut(s)	328, 337, 567
Hpy188I	TCNGA	2 cut(s)	150, 162
Hpy188III	TCNNGA	4 cut(s)	28, 401, 518, 628
Hpy8I	GTNNAC	3 cut(s)	328, 337, 567
Hpy99I	CGWCG	3 cut(s)	107, 326, 407
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	103, 259
HpyCH4IV	ACGT	4 cut(s)	226, 321, 330, 405
HpyCH4V	TGCA	3 cut(s)	197, 646, 787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 493, 548, 599, 652, 739
HpyF3I	CTNAG	2 cut(s)	265, 594
HpySE526I	ACGT	4 cut(s)	226, 321, 330, 405
Hsp92I	GRCGYC	1 cut(s)	321
HspAI	GCGC	1 cut(s)	554
KspI	CCGCGG	1 cut(s)	720
Kzo9I	GATC	5 cut(s)	308, 360, 387, 504, 514
LmnI	GCTCC	5 cut(s)	67, 143, 484, 606, 739
Lsp1109I	GCAGC	2 cut(s)	51, 676
LweI	GCATC	3 cut(s)	105, 192, 774
MaeI	CTAG	3 cut(s)	281, 491, 693
MaeII	ACGT	4 cut(s)	226, 321, 330, 405
MaeIII	GTNAC	2 cut(s)	406, 416
MalI	GATC	5 cut(s)	310, 362, 389, 506, 516
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	5 cut(s)	308, 360, 387, 504, 514
MboII	GAAGA	5 cut(s)	269, 388, 463, 511, 571
MhlI	GDGCHC	3 cut(s)	72, 471, 744
MluCI	AATT	2 cut(s)	163, 379
MlyI	GAGTC	2 cut(s)	43, 122
MmeI	TCCRAC	2 cut(s)	45, 744
MslI	CAYNNNNRTG	2 cut(s)	197, 637
MspA1I	CMGCKG	2 cut(s)	42, 719
MspI	CCGG	3 cut(s)	88, 124, 755
MspR9I	CCNGG	3 cut(s)	89, 296, 590
MvaI	CCWGG	2 cut(s)	296, 590
MvnI	CGCG	2 cut(s)	548, 719
MwoI	GCNNNNNNNGC	6 cut(s)	93, 493, 548, 599, 652, 739
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	5 cut(s)	308, 360, 387, 504, 514
NlaIV	GGNNCC	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	416
PaeR7I	CTCGAG	1 cut(s)	734
PceI	AGGCCT	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	41, 489, 550, 553, 691
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	2 cut(s)	42, 121
PpsI	GAGTC	2 cut(s)	42, 121
Ppu21I	YACGTR	1 cut(s)	331
Psp124BI	GAGCTC	2 cut(s)	471, 744
Psp6I	CCWGG	2 cut(s)	294, 588
PspGI	CCWGG	2 cut(s)	294, 588
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	1 cut(s)	541
PspXI	VCTCGAGB	1 cut(s)	734
PvuI	CGATCG	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	3 cut(s)	47, 329, 650
RsaNI	GTAC	3 cut(s)	46, 328, 649
RseI	CAYNNNNRTG	2 cut(s)	197, 637
SacI	GAGCTC	2 cut(s)	471, 744
SacII	CCGCGG	1 cut(s)	720
SatI	GCNGC	5 cut(s)	40, 488, 549, 552, 690
Sau3AI	GATC	5 cut(s)	308, 360, 387, 504, 514
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	2 cut(s)	43, 122
ScrFI	CCNGG	3 cut(s)	89, 296, 590
SduI	GDGCHC	3 cut(s)	72, 471, 744
SfaNI	GCATC	3 cut(s)	105, 192, 774
Sfr274I	CTCGAG	1 cut(s)	734
Sfr303I	CCGCGG	1 cut(s)	720
SgrBI	CCGCGG	1 cut(s)	720
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	2 cut(s)	197, 637
SmlI	CTYRAG	3 cut(s)	314, 626, 734
SmoI	CTYRAG	3 cut(s)	314, 626, 734
Sse9I	AATT	2 cut(s)	163, 379
SseBI	AGGCCT	1 cut(s)	800
SsiI	CCGC	9 cut(s)	214, 482, 487, 548, 551, 586, 668, 717, 719
SspMI	CTAG	3 cut(s)	281, 491, 693
SstI	GAGCTC	2 cut(s)	471, 744
StuI	AGGCCT	1 cut(s)	800
StyD4I	CCNGG	3 cut(s)	87, 294, 588
TaaI	ACNGT	2 cut(s)	103, 259
TaiI	ACGT	4 cut(s)	229, 324, 333, 408
TaqI	TCGA	4 cut(s)	29, 307, 513, 735
TasI	AATT	2 cut(s)	163, 379
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	3 cut(s)	490, 551, 554
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	2 cut(s)	199, 262
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	39, 689
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	199, 262
XagI	CCTNNNNNAGG	2 cut(s)	593, 614
XapI	RAATTY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	734
XspI	CTAG	3 cut(s)	281, 491, 693
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.