Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007968.1

Orthogroup ID

OG0015795

Physical Location & Seq

Genomic Coordinates Reverse (-)

59514 .. 60365

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007968.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgagtcgcagccggtacttcaccagaagagagctggagctcaactccccatctcgccgggacggcatcaccgtcggaaaagagtcaaaactccgatcccagtactgcttccatattcaacagatcggtcagaaattgagactgcctcacctgaccatagccaccgcaataatgctgtgccaccgcttctacgcgcgtcagtctcacgccaagaactgctggcacacagtggcctcttcatgtatccttctagctagcaaagtccaagacacgcctcgatccctcagcgacgtcgtttccgtggtttattgccgcgagatccaggaccggatcacgagcctgatgatgaagtacaagatcaatcctcacgacatgagagaaagagacgagttttgcgaaaagagagtcaagattttgaggagggagaagaaagaactgatcctagcggcggagatgatagtgctaaagacgatcgggttcgatcttgatgttgagcttccctacaaggctctcgttgcagcgctgaagaggttgactactgatgataaaatcaccggcctgcttactgaggtggcgtggagtcttgtggaggagtggctcaagacatcgctatgcttgcagtacaagccaaagtacattgcggttgggtcagtcgtggtggctgctagggttctgaatgtgaagttacccgcgggtgacaagtggctcgaggagctcggtgttttgccggaacggttggatgaggtcattcgctggatgcagagtaagctctgcaaagtgaagacaagggaggtcataagttttgtgagcttttatgagattactacccggccattagaaaagggctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

283

Amino Acids

32.85

Weight (kDa)

9.48

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66400
fragaria_vesca	FvH4_4g33640 FvH4_4g33721 FvH4_6g16340
rosa_chinensis	RchiOBHm_Chr4g0443101
rosa_laevigata	RLG00000005953
rosa_multiflora	Rmu_sc0007968.1_g000015 Rmu_sc0008069.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383730
rosa_rugosa	Rorug04G0344400
rosa_samantha	Rh3AG156900 Rh4BG410300 Rh4CG425900 Rh4DG405300
rosa_wichuraiana	Rw4G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	294
AccII	CGCG	4 cut(s)	194, 196, 315, 692
AciI	CCGC	8 cut(s)	165, 184, 313, 446, 449, 641, 690, 692
AclWI	GGATC	5 cut(s)	90, 273, 313, 338, 433
AcoI	YGGCCR	1 cut(s)	830
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	5 cut(s)	17, 104, 353, 623, 635
AfeI	AGCGCT	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	7 cut(s)	34, 40, 254, 496, 715, 769, 810
AluI	AGCT	7 cut(s)	34, 40, 254, 496, 715, 769, 810
Alw21I	GWGCWC	2 cut(s)	42, 717
Alw26I	GTCTC	3 cut(s)	133, 207, 378
AlwI	GGATC	5 cut(s)	90, 273, 313, 338, 433
Ama87I	CYCGRG	1 cut(s)	707
Aor51HI	AGCGCT	1 cut(s)	522
AoxI	GGCC	3 cut(s)	231, 556, 830
ApeKI	GCWGC	3 cut(s)	9, 518, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
AspLEI	GCGC	2 cut(s)	196, 523
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	2 cut(s)	59, 829
AsuHPI	GGTGA	5 cut(s)	13, 61, 140, 544, 707
AsuNHI	GCTAGC	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	42, 717
BauI	CACGAG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	2 cut(s)	42, 717
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	21, 530, 649
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	2 cut(s)	59, 829
BcoDI	GTCTC	3 cut(s)	133, 207, 378
BfaI	CTAG	4 cut(s)	251, 255, 443, 666
BfoI	RGCGCY	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
BlsI	GCNGC	5 cut(s)	11, 314, 448, 520, 664
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	59, 323, 829
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	59, 323, 829
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	75, 747
BmtI	GCTAGC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	4 cut(s)	29, 61, 130, 162
BpmI	CTGGAG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	2 cut(s)	59, 829
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	300, 690
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	2 cut(s)	12, 554
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	300, 690
BseGI	GGATG	2 cut(s)	745, 762
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	298, 558
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	3 cut(s)	433, 605, 725
BseXI	GCAGC	3 cut(s)	21, 530, 649
Bsh1236I	CGCG	4 cut(s)	194, 196, 315, 692
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	233, 558, 832
BsiEI	CGRYCG	1 cut(s)	474
BsiHKAI	GWGCWC	2 cut(s)	42, 717
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	6 cut(s)	13, 58, 328, 555, 728, 829
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	133, 207, 378
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	233, 558, 832
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	42, 717
Bsp143I	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
BspACI	CCGC	8 cut(s)	165, 184, 313, 446, 449, 641, 690, 692
BspANI	GGCC	3 cut(s)	233, 558, 832
BspCNI	CTCAG	2 cut(s)	297, 559
BspFNI	CGCG	4 cut(s)	194, 196, 315, 692
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	5 cut(s)	90, 273, 313, 338, 433
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	2 cut(s)	12, 554
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	2 cut(s)	12, 554
BssECI	CCNNGG	2 cut(s)	300, 690
BssMI	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	3 cut(s)	73, 229, 735
Bst6I	CTCTTC	3 cut(s)	22, 241, 521
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	221, 256, 560, 617
BstDEI	CTNAG	2 cut(s)	284, 567
BstDSI	CCRYGG	2 cut(s)	300, 690
BstF5I	GGATG	2 cut(s)	745, 762
BstFNI	CGCG	4 cut(s)	194, 196, 315, 692
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	2 cut(s)	196, 523
BstKTI	GATC	9 cut(s)	98, 126, 281, 321, 333, 360, 441, 474, 484
BstMAI	GTCTC	3 cut(s)	133, 207, 378
BstMBI	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 515, 616, 625, 712, 766
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	57, 321, 827
BstUI	CGCG	4 cut(s)	194, 196, 315, 692
BstV1I	GCAGC	3 cut(s)	21, 530, 649
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	233, 558, 832
BtgI	CCRYGG	2 cut(s)	300, 690
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	745, 762
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	4 cut(s)	221, 256, 560, 617
CfoI	GCGC	2 cut(s)	196, 523
Cfr10I	RCCGGY	2 cut(s)	12, 554
Cfr13I	GGNCC	1 cut(s)	325
Cfr42I	CCGCGG	1 cut(s)	693
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	5 cut(s)	16, 103, 352, 622, 634
CviAII	CATG	2 cut(s)	240, 373
CviQI	GTAC	5 cut(s)	16, 103, 352, 622, 634
DdeI	CTNAG	2 cut(s)	284, 567
DpnI	GATC	9 cut(s)	97, 125, 280, 320, 332, 359, 440, 473, 483
DpnII	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
DraIII	CACNNNGTG	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	830
Eam1104I	CTCTTC	3 cut(s)	22, 241, 521
EarI	CTCTTC	3 cut(s)	22, 241, 521
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	2 cut(s)	40, 715
Eco24I	GRGCYC	2 cut(s)	42, 717
Eco47I	GGWCC	1 cut(s)	325
Eco47III	AGCGCT	1 cut(s)	522
Eco53kI	GAGCTC	2 cut(s)	40, 715
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	707
EcoICRI	GAGCTC	2 cut(s)	40, 715
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	2 cut(s)	42, 717
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	2 cut(s)	243, 376
FaiI	YATR	7 cut(s)	114, 158, 241, 374, 613, 797, 816
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	2 cut(s)	239, 372
FauI	CCCGC	2 cut(s)	685, 697
Fnu4HI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
FokI	GGATG	2 cut(s)	752, 769
FriOI	GRGCYC	2 cut(s)	42, 717
Fsp4HI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
FspBI	CTAG	4 cut(s)	251, 255, 443, 666
GlaI	GCGC	2 cut(s)	195, 522
GluI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	233, 558, 832
HapII	CCGG	6 cut(s)	13, 58, 328, 555, 728, 829
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	196, 523
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	243, 376
Hin6I	GCGC	2 cut(s)	194, 521
HinP1I	GCGC	2 cut(s)	194, 521
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	4 cut(s)	4, 83, 405, 580
HpaII	CCGG	6 cut(s)	13, 58, 328, 555, 728, 829
HphI	GGTGA	5 cut(s)	13, 61, 140, 544, 707
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	4 cut(s)	77, 95, 132, 675
Hpy188III	TCNNGA	5 cut(s)	334, 368, 409, 485, 601
Hpy8I	GTNNAC	1 cut(s)	534
Hpy99I	CGWCG	3 cut(s)	77, 293, 296
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	3 cut(s)	73, 229, 735
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	518, 619, 760, 774
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 515, 616, 625, 712, 766
HpyF3I	CTNAG	2 cut(s)	284, 567
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	243, 376
HspAI	GCGC	2 cut(s)	194, 521
KspI	CCGCGG	1 cut(s)	693
Kzo9I	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
LmnI	GCTCC	2 cut(s)	37, 712
Lsp1109I	GCAGC	3 cut(s)	21, 530, 649
LweI	GCATC	2 cut(s)	75, 747
MaeI	CTAG	4 cut(s)	251, 255, 443, 666
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	684, 695
MalI	GATC	9 cut(s)	97, 125, 280, 320, 332, 359, 440, 473, 483
MboI	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
MboII	GAAGA	5 cut(s)	39, 228, 439, 538, 793
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	42, 717
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	4 cut(s)	13, 92, 414, 589
MmeI	TCCRAC	2 cut(s)	55, 717
MslI	CAYNNNNRTG	1 cut(s)	610
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	6 cut(s)	13, 58, 328, 555, 728, 829
MspR9I	CCNGG	3 cut(s)	59, 323, 829
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	4 cut(s)	194, 196, 315, 692
MwoI	GCNNNNNNNGC	6 cut(s)	63, 515, 616, 625, 712, 766
NciI	CCSGG	2 cut(s)	59, 829
NdeII	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	243, 376
NmuCI	GTSAC	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 297, 393
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	11, 314, 448, 520, 664
Ple19I	CGATCG	1 cut(s)	474
PleI	GAGTC	4 cut(s)	12, 91, 413, 588
PpsI	GAGTC	4 cut(s)	12, 91, 413, 588
Psp124BI	GAGCTC	2 cut(s)	42, 717
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	325
PspXI	VCTCGAGB	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	318
PvuI	CGATCG	1 cut(s)	474
RsaI	GTAC	5 cut(s)	17, 104, 353, 623, 635
RsaNI	GTAC	5 cut(s)	16, 103, 352, 622, 634
RseI	CAYNNNNRTG	1 cut(s)	610
SacI	GAGCTC	2 cut(s)	42, 717
SacII	CCGCGG	1 cut(s)	693
SatI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
Sau3AI	GATC	9 cut(s)	95, 123, 278, 318, 330, 357, 438, 471, 481
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	4 cut(s)	13, 92, 414, 589
ScrFI	CCNGG	3 cut(s)	59, 323, 829
SduI	GDGCHC	2 cut(s)	42, 717
SfaNI	GCATC	2 cut(s)	75, 747
Sfr274I	CTCGAG	1 cut(s)	707
Sfr303I	CCGCGG	1 cut(s)	693
SgrBI	CCGCGG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	2 cut(s)	599, 707
SmoI	CTYRAG	2 cut(s)	599, 707
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	8 cut(s)	165, 184, 313, 446, 449, 641, 690, 692
SspMI	CTAG	4 cut(s)	251, 255, 443, 666
SstI	GAGCTC	2 cut(s)	42, 717
StyD4I	CCNGG	3 cut(s)	57, 321, 827
TaaI	ACNGT	3 cut(s)	73, 229, 735
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	277, 480, 708
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	134
TatI	WGTACW	4 cut(s)	102, 351, 621, 633
TauI	GCSGC	2 cut(s)	315, 449
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	3 cut(s)	9, 518, 662
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	2 cut(s)	228, 362
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	707
XspI	CTAG	4 cut(s)	251, 255, 443, 666
ZraI	GACGTC	1 cut(s)	292
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.