Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015795

Physical Location & Seq

Genomic Coordinates Forward (+)

63329047 .. 63329895

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGTCGCAGCCGGTACTTCACCAGAAGAGAGCTGGAGCTCAACTCCCCATCTCGCCGGGACGGCATCTCTGTCGGCAAAGAGTCAAAACTCCGATCCCAGTACTGCTCCCATATTCAACAGATCGGTCAGAAATTGAGACTGCCTCACCTGACCATAGCCACCGCAATAATGCTGTGCCACCGCTTCTACTCCCGTCAGTCTCACGCCAAGAACTGCTGGCACACAGTGGCCTCTTCATGTATCCTTCTAGCTAGCAAAGTCCAAGACACGCCTCGATCCCTCAGCGACGTCGTTTCCGTGGTTTATTGCCGCGAGATCCAGGACCGGATCACGAGCTTGATGATGAAGTACAAGATCAATCCTCACGACATGAGAGAAAGAGACGAGTTTTGCGAAAAGAGAGTCAAGATTTTGAGGAGGGAGAAGAAAGAACTGATCCTAGCGGCGGAGATGATAGTGCTAAAGACGATCGGGTTCGATCTTGATGTTGAGCTTCCCTACAAGGCTCTCGTTGCAGCGCTGAAGAGGTTGACTACTGATGATAAAATCACGCGCCTGCTTACTGAGGTGGCGTGGAGTCTTGTGGAGGAGTGGATCAAGACATCACTATGCTTGCAGTACAAGCCAAAGTACATTGCGGTTGGGTCAGTCGTGGTGGCTGCTAGGGTTCTGAATCTGAAGTTACCCGCGGGTGAGAAGTGGCTCCAAGAGATCGGTGTTTCACAGGAGCGGTTGGATGAGGTCATTCGCTGGATGCAGGGTAAGCTCTGCAAAGTCAAGACAAGGGAGGTCATAAGTTTTGTGAGCTTTTATGAGATTACTACCCGGCCATTAGAAAAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

282

Amino Acids

32.73

Weight (kDa)

9.61

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	10 - 162	4.5e-15	Cyclin, N-terminal domain
TFIIB	PF00382	36 - 105	8.5e-07	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66400
fragaria_vesca	FvH4_4g33640 FvH4_4g33721 FvH4_6g16340
rosa_chinensis	RchiOBHm_Chr4g0443101
rosa_laevigata	RLG00000005953
rosa_multiflora	Rmu_sc0007968.1_g000015 Rmu_sc0008069.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383730
rosa_rugosa	Rorug04G0344400
rosa_samantha	Rh3AG156900 Rh4BG410300 Rh4CG425900 Rh4DG405300
rosa_wichuraiana	Rw4G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	733
AccII	CGCG	3 cut(s)	315, 556, 692
AciI	CCGC	9 cut(s)	165, 184, 313, 446, 449, 641, 690, 692, 733
AclWI	GGATC	6 cut(s)	90, 273, 313, 338, 433, 605
AcoI	YGGCCR	1 cut(s)	830
AcuI	CTGAAG	2 cut(s)	545, 701
AcyI	GRCGYC	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	5 cut(s)	17, 104, 353, 623, 635
AfeI	AGCGCT	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	7 cut(s)	34, 40, 254, 339, 496, 769, 810
AluI	AGCT	7 cut(s)	34, 40, 254, 339, 496, 769, 810
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	133, 207, 378
AlwI	GGATC	6 cut(s)	90, 273, 313, 338, 433, 605
Aor51HI	AGCGCT	1 cut(s)	522
AoxI	GGCC	2 cut(s)	231, 830
ApeKI	GCWGC	3 cut(s)	9, 518, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
AspLEI	GCGC	2 cut(s)	523, 558
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	2 cut(s)	59, 829
AsuHPI	GGTGA	3 cut(s)	13, 140, 707
AsuNHI	GCTAGC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	21, 530, 649
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	2 cut(s)	59, 829
BcoDI	GTCTC	3 cut(s)	133, 207, 378
BfaI	CTAG	4 cut(s)	251, 255, 443, 666
BfoI	RGCGCY	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
BlsI	GCNGC	5 cut(s)	11, 314, 448, 520, 664
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	59, 323, 829
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	707
BmrFI	CCNGG	3 cut(s)	59, 323, 829
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	75, 747
BmtI	GCTAGC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	94
BplI	GAGNNNNNCTC	4 cut(s)	29, 61, 130, 162
BpmI	CTGGAG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	59, 829
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	300, 690
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	300, 690
BseGI	GGATG	2 cut(s)	745, 762
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	298, 558
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	433, 605
BseXI	GCAGC	3 cut(s)	21, 530, 649
Bsh1236I	CGCG	3 cut(s)	315, 556, 692
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	2 cut(s)	233, 832
BsiEI	CGRYCG	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	4 cut(s)	13, 58, 328, 829
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	133, 207, 378
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	233, 832
Bsp1286I	GDGCHC	1 cut(s)	42
BspACI	CCGC	9 cut(s)	165, 184, 313, 446, 449, 641, 690, 692, 733
BspANI	GGCC	2 cut(s)	233, 832
BspCNI	CTCAG	2 cut(s)	297, 559
BspFNI	CGCG	3 cut(s)	315, 556, 692
BspLI	GGNNCC	1 cut(s)	707
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	6 cut(s)	90, 273, 313, 338, 433, 605
BsrBI	CCGCTC	1 cut(s)	733
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	300, 690
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	3 cut(s)	22, 241, 521
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	221, 256, 560, 617
BstDEI	CTNAG	2 cut(s)	284, 567
BstDSI	CCRYGG	2 cut(s)	300, 690
BstF5I	GGATG	2 cut(s)	745, 762
BstFNI	CGCG	3 cut(s)	315, 556, 692
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	2 cut(s)	523, 558
BstMAI	GTCTC	3 cut(s)	133, 207, 378
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 515, 625, 766
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	57, 321, 827
BstUI	CGCG	3 cut(s)	315, 556, 692
BstV1I	GCAGC	3 cut(s)	21, 530, 649
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	233, 832
BtgI	CCRYGG	2 cut(s)	300, 690
BtsCI	GGATG	2 cut(s)	745, 762
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	4 cut(s)	221, 256, 560, 617
CfoI	GCGC	2 cut(s)	523, 558
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	325
Cfr42I	CCGCGG	1 cut(s)	693
Csp6I	GTAC	5 cut(s)	16, 103, 352, 622, 634
CviAII	CATG	2 cut(s)	240, 373
CviQI	GTAC	5 cut(s)	16, 103, 352, 622, 634
DdeI	CTNAG	2 cut(s)	284, 567
DraIII	CACNNNGTG	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	830
Eam1104I	CTCTTC	3 cut(s)	22, 241, 521
EarI	CTCTTC	3 cut(s)	22, 241, 521
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	325
Eco47III	AGCGCT	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	545, 701
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	2 cut(s)	243, 376
FaiI	YATR	7 cut(s)	114, 158, 241, 374, 613, 797, 816
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	2 cut(s)	239, 372
FauI	CCCGC	2 cut(s)	685, 697
Fnu4HI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
FokI	GGATG	2 cut(s)	752, 769
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
FspBI	CTAG	4 cut(s)	251, 255, 443, 666
GlaI	GCGC	2 cut(s)	522, 557
GluI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	233, 832
HapII	CCGG	4 cut(s)	13, 58, 328, 829
HhaI	GCGC	2 cut(s)	523, 558
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	243, 376
Hin6I	GCGC	2 cut(s)	521, 556
HinP1I	GCGC	2 cut(s)	521, 556
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	5 cut(s)	4, 83, 405, 580, 676
HpaII	CCGG	4 cut(s)	13, 58, 328, 829
HphI	GGTGA	3 cut(s)	13, 140, 707
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	4 cut(s)	95, 132, 675, 681
Hpy188III	TCNNGA	6 cut(s)	334, 368, 409, 485, 601, 781
Hpy8I	GTNNAC	1 cut(s)	534
Hpy99I	CGWCG	2 cut(s)	293, 296
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	518, 619, 760, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 515, 625, 766
HpyF3I	CTNAG	2 cut(s)	284, 567
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	243, 376
HspAI	GCGC	2 cut(s)	521, 556
KspI	CCGCGG	1 cut(s)	693
LmnI	GCTCC	4 cut(s)	37, 113, 711, 730
Lsp1109I	GCAGC	3 cut(s)	21, 530, 649
LweI	GCATC	2 cut(s)	75, 747
MaeI	CTAG	4 cut(s)	251, 255, 443, 666
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	684
MbiI	CCGCTC	1 cut(s)	733
MboII	GAAGA	4 cut(s)	39, 228, 439, 538
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	4 cut(s)	13, 92, 414, 589
MmeI	TCCRAC	1 cut(s)	717
MslI	CAYNNNNRTG	1 cut(s)	610
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	4 cut(s)	13, 58, 328, 829
MspR9I	CCNGG	3 cut(s)	59, 323, 829
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	3 cut(s)	315, 556, 692
MwoI	GCNNNNNNNGC	4 cut(s)	63, 515, 625, 766
NciI	CCSGG	2 cut(s)	59, 829
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	243, 376
NlaIV	GGNNCC	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 393
PfeI	GAWTC	1 cut(s)	676
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	11, 314, 448, 520, 664
Ple19I	CGATCG	1 cut(s)	474
PleI	GAGTC	4 cut(s)	12, 91, 413, 588
PpsI	GAGTC	4 cut(s)	12, 91, 413, 588
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	707
PspPI	GGNCC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	318
PvuI	CGATCG	1 cut(s)	474
RsaI	GTAC	5 cut(s)	17, 104, 353, 623, 635
RsaNI	GTAC	5 cut(s)	16, 103, 352, 622, 634
RseI	CAYNNNNRTG	1 cut(s)	610
SacI	GAGCTC	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	693
SatI	GCNGC	5 cut(s)	10, 313, 447, 519, 663
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	4 cut(s)	13, 92, 414, 589
ScrFI	CCNGG	3 cut(s)	59, 323, 829
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	75, 747
Sfr303I	CCGCGG	1 cut(s)	693
SgrBI	CCGCGG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	610
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	9 cut(s)	165, 184, 313, 446, 449, 641, 690, 692, 733
SspMI	CTAG	4 cut(s)	251, 255, 443, 666
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	57, 321, 827
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	277, 480
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	134
TatI	WGTACW	4 cut(s)	102, 351, 621, 633
TauI	GCSGC	2 cut(s)	315, 449
TfiI	GAWTC	1 cut(s)	676
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	3 cut(s)	9, 518, 662
TspDTI	ATGAA	2 cut(s)	228, 362
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	4 cut(s)	251, 255, 443, 666
ZraI	GACGTC	1 cut(s)	292
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.