Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015795

Physical Location & Seq

Genomic Coordinates Reverse (-)

10254195 .. 10254770

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAATCAGTGGTGTTTCTCGAGACAAGCATTGGAACTCCACTCTCCATCGCGGAGTTATGACCTCTCTGAGCAAAGAGTCACAGTTGTGCTCACATACTGCTCCTATCTTCGCCAGCTCGGCTCCAAGCTCAGACTTCATCACCTCACCATAGTCAAGGCCACCATGTTCTGCCACCGCTTCTTCGCACGTCAATCTTTCGCCAAGAACGACTGGTACACCGTCGCTACTGCCTGCATTTTCCTCGCCGGCAAAGTGGAGGATTCCCAGCGCCGTCTGAAGGACGTGGTGAATGTGGCATTTGGTAATGAGATCCAGCATCACATCGTCAACCAGATGGTGCGCTCGACTATCAATCCTCTTGATATGAGAGAAAGAGATGAGTTCTGCAGAGAAAAAGGGCGTGTTTTTAAAGACCAAAAGAGAAAATTGATCATAGCTGCGAAGAGACTTGTGCTAAAAACAATGCAGTTCGATCTCGACGTGCAGCTTCCTTACAAGACTCTGATTGCTGCTCTCAGGAGATTGAGTGAAGAAAAAATAACTGGTTTAGGCTCCCTGAGGTTACAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

192

Amino Acids

22.41

Weight (kDa)

9.94

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	31 - 122	5.5e-13	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66400
fragaria_vesca	FvH4_4g33640 FvH4_4g33721 FvH4_6g16340
rosa_chinensis	RchiOBHm_Chr4g0443101
rosa_laevigata	RLG00000005953
rosa_multiflora	Rmu_sc0007968.1_g000015 Rmu_sc0008069.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383730
rosa_rugosa	Rorug04G0344400
rosa_samantha	Rh3AG156900 Rh4BG410300 Rh4CG425900 Rh4DG405300
rosa_wichuraiana	Rw4G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	2 cut(s)	52, 178
AclWI	GGATC	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	280
AjiI	CACGTC	3 cut(s)	191, 286, 484
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	118, 130, 440, 490
AluI	AGCT	4 cut(s)	118, 130, 440, 490
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	16, 442
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	3 cut(s)	440, 487, 512
AspLEI	GCGC	2 cut(s)	273, 345
AsuHPI	GGTGA	3 cut(s)	134, 139, 301
AvaI	CYCGRG	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	427, 499, 499
BccI	CCATC	2 cut(s)	55, 331
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BclI	TGATCA	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	16, 442
BfmI	CTRYAG	1 cut(s)	388
BfoI	RGCGCY	1 cut(s)	274
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	441, 488, 513
BlsI	GCNGC	3 cut(s)	442, 489, 514
BmeT110I	CYCGRG	1 cut(s)	19
BmgBI	CACGTC	3 cut(s)	191, 286, 484
BmiI	GGNNCC	2 cut(s)	124, 556
BmsI	GCATC	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	218, 550
Bse21I	CCTNAGG	1 cut(s)	560
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	4 cut(s)	60, 145, 532, 551
BseNI	ACTGG	2 cut(s)	218, 550
BseXI	GCAGC	3 cut(s)	427, 499, 499
BseYI	CCCAGC	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	2 cut(s)	16, 442
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	312, 432, 475
BspACI	CCGC	2 cut(s)	52, 178
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	4 cut(s)	61, 144, 531, 552
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	124, 556
BspMAI	CTGCAG	1 cut(s)	392
BspPI	GGATC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	218, 550
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	3 cut(s)	312, 432, 475
Bst4CI	ACNGT	2 cut(s)	85, 223
Bst6I	CTCTTC	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	116, 235, 250
BstDEI	CTNAG	4 cut(s)	69, 131, 518, 560
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	2 cut(s)	273, 345
BstKTI	GATC	3 cut(s)	315, 435, 478
BstMAI	GTCTC	2 cut(s)	16, 442
BstMBI	GATC	3 cut(s)	312, 432, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	388
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	427, 499, 499
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	33
BtrI	CACGTC	3 cut(s)	191, 286, 484
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	116, 235, 250
CfoI	GCGC	2 cut(s)	273, 345
Cfr10I	RCCGGY	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	118, 123, 130, 161, 440, 490, 555
CviKI_1	RGCY	7 cut(s)	118, 123, 130, 161, 440, 490, 555
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	69, 131, 518, 560
DpnI	GATC	3 cut(s)	314, 434, 477
DpnII	GATC	3 cut(s)	312, 432, 475
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	19
FaeI	CATG	1 cut(s)	169
FaiI	YATR	6 cut(s)	60, 97, 152, 167, 368, 437
FatI	CATG	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	441, 488, 513
Fsp4HI	GCNGC	3 cut(s)	441, 488, 513
GlaI	GCGC	2 cut(s)	272, 344
GluI	GCNGC	3 cut(s)	441, 488, 513
GsaI	CCCAGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	2 cut(s)	273, 345
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	2 cut(s)	271, 343
HinP1I	GCGC	2 cut(s)	271, 343
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	4 cut(s)	4, 78, 263, 502
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	134, 139, 301
Hpy166II	GTNNAC	2 cut(s)	219, 331
Hpy188I	TCNGA	4 cut(s)	70, 134, 279, 507
Hpy188III	TCNNGA	5 cut(s)	19, 21, 362, 479, 520
Hpy8I	GTNNAC	2 cut(s)	219, 331
Hpy99I	CGWCG	2 cut(s)	227, 485
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	85, 223
HpyCH4IV	ACGT	3 cut(s)	190, 285, 483
HpyCH4V	TGCA	4 cut(s)	237, 390, 469, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	4 cut(s)	69, 131, 518, 560
HpySE526I	ACGT	3 cut(s)	190, 285, 483
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	2 cut(s)	271, 343
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	312, 432, 475
LmnI	GCTCC	3 cut(s)	107, 128, 560
Lsp1109I	GCAGC	3 cut(s)	427, 499, 499
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	3 cut(s)	190, 285, 483
MaeIII	GTNAC	2 cut(s)	79, 564
MalI	GATC	3 cut(s)	314, 434, 477
MboI	GATC	3 cut(s)	312, 432, 475
MboII	GAAGA	4 cut(s)	101, 175, 457, 545
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	428
MlyI	GAGTC	2 cut(s)	87, 496
MnlI	CCTC	6 cut(s)	74, 155, 253, 254, 369, 555
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	120
NaeI	GCCGGC	1 cut(s)	250
NdeII	GATC	3 cut(s)	312, 432, 475
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	124, 556
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 480
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	4, 263
PkrI	GCNGC	3 cut(s)	442, 489, 514
PleI	GAGTC	2 cut(s)	86, 496
PpsI	GAGTC	2 cut(s)	86, 496
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	124, 556
PsrI	GAACNNNNNNTAC	2 cut(s)	200, 232
PstI	CTGCAG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	441, 488, 513
Sau3AI	GATC	3 cut(s)	312, 432, 475
SchI	GAGTC	2 cut(s)	87, 496
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	388
Sfr274I	CTCGAG	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	2 cut(s)	52, 178
TaaI	ACNGT	2 cut(s)	85, 223
TaiI	ACGT	3 cut(s)	193, 288, 486
TaqI	TCGA	4 cut(s)	20, 347, 474, 480
TasI	AATT	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	4, 263
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	3 cut(s)	440, 487, 512
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	17, 128
TspRI	CASTG	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.