Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015795

Physical Location & Seq

Genomic Coordinates Forward (+)

66875183 .. 66876359

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG425900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGTAAGTATTTCCTAGCCGCTCAGGGACTGAAACATTTCTATATAATAAGTCCAGCTCTTCATTCCCAATTCGATCATACTTCCTCCTACATTTCTCGTAACCTTTCCACTTCTCTTCCTTCATATCCTTCTCCTCTGCCTGAAAATCCATTCCCGATGAGTCGCAGCCGGTACTTCACCAGAAGAGAGCTGGAGCGAAACTCCCCATCTCGCCGGGACGGCATCACCGTCGGCAAAGAGTCAAAACTCCGATCCCAGTACTGCTCCCATATTCAACAGATCGGTCAGAAATTGAGACTGCCTCACCTGACCATAGCCACCGCAATAATGCTGTGCCACCGCTTTTACGCGCGTCAGTCTCACGCCAAGAACTGCTGGCACACAGTGGCCTCTTCATGTATCCTTCTAGCTAGCAAAGTCCAAGACACGCCTCGATCCCTCAGCGACGTCGTTTCCGTGGTTTATTGCCGCGAGATCCAGGACCGGATCACGAGCCTGATGATGAAGTACAAGATCAATCCTCACGACGTGAGAGAAAGAGACGAGTTTTGCGAAAAGATAGTCAAGATTTTGAGGAGGGAGAAGAAAGAACTGATCCTAGCGGCGGAGATGATAGTGCTAAAGACGATCGGGTTCGATCTTGATGTTGAGCTTCCCTACAAGGCTCTCGTTGCAGCGCTGAAGAGGTTGACTACTGATGATAAAATCACCGGCCTGCTTACTGAGGTGGCGTGGAGTCTTTTGGAGGAGTGGCTCAAGACATCGCTATGCTTGCAGTACAAGCCCAAGTACATTGCGGTTGGGTCAGTCGTGGTGGCTGCTAGGGTTCTGAATGTGAAGTTACCCGCGGGTGACAAGTGGCTCGAGGAGCTCGGTGTTTTGCCGGAGCGGTTGGATGAGGTCATTCGCTGGATGCAGAGTAAGCTCTGCAAAGTGAAGACAAGGGAGGTCATAAGTTTTGTGAGCTTTTATGAGATTACTACCCGGCCATTAGAAAAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

335

Amino Acids

38.55

Weight (kDa)

9.47

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	63 - 215	2.8e-14	Cyclin, N-terminal domain
TFIIB	PF00382	89 - 158	1.9e-06	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66400
fragaria_vesca	FvH4_4g33640 FvH4_4g33721 FvH4_6g16340
rosa_chinensis	RchiOBHm_Chr4g0443101
rosa_laevigata	RLG00000005953
rosa_multiflora	Rmu_sc0007968.1_g000015 Rmu_sc0008069.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383730
rosa_rugosa	Rorug04G0344400
rosa_samantha	Rh3AG156900 Rh4BG410300 Rh4CG425900 Rh4DG405300
rosa_wichuraiana	Rw4G034370

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	453
AccBSI	CCGCTC	2 cut(s)	23, 892
AccII	CGCG	4 cut(s)	353, 355, 474, 851
AclWI	GGATC	5 cut(s)	249, 432, 472, 497, 592
AcoI	YGGCCR	1 cut(s)	989
AcuI	CTGAAG	1 cut(s)	704
AcyI	GRCGYC	1 cut(s)	450
AdeI	CACNNNGTG	2 cut(s)	388, 532
AfaI	GTAC	5 cut(s)	176, 263, 512, 782, 794
AfeI	AGCGCT	1 cut(s)	681
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	1 cut(s)	278
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	7 cut(s)	59, 193, 413, 655, 874, 928, 969
AluI	AGCT	7 cut(s)	59, 193, 413, 655, 874, 928, 969
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	3 cut(s)	292, 366, 537
AlwI	GGATC	5 cut(s)	249, 432, 472, 497, 592
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	866
Aor51HI	AGCGCT	1 cut(s)	681
AoxI	GGCC	3 cut(s)	390, 715, 989
ApeKI	GCWGC	3 cut(s)	168, 677, 821
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	355, 682
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	2 cut(s)	218, 988
AsuHPI	GGTGA	5 cut(s)	172, 220, 299, 703, 866
AsuNHI	GCTAGC	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	866
AvaII	GGWCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	876
BauI	CACGAG	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	947
Bbv12I	GWGCWC	1 cut(s)	876
BbvCI	CCTCAGC	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	180, 689, 808
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	2 cut(s)	218, 988
BcoDI	GTCTC	3 cut(s)	292, 366, 537
BfaI	CTAG	5 cut(s)	17, 410, 414, 602, 825
BfoI	RGCGCY	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	6 cut(s)	21, 169, 472, 606, 678, 822
BlsI	GCNGC	6 cut(s)	22, 170, 473, 607, 679, 823
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	218, 482, 988
Bme18I	GGWCC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	866
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	484
BmrFI	CCNGG	3 cut(s)	218, 482, 988
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	234, 906
BmtI	GCTAGC	1 cut(s)	417
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	947
BplI	GAGNNNNNCTC	4 cut(s)	188, 220, 289, 321
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	2 cut(s)	24, 443
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	2 cut(s)	218, 988
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	459, 849
BsaWI	WCCGGW	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse118I	RCCGGY	2 cut(s)	171, 713
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	459, 849
BseGI	GGATG	2 cut(s)	904, 921
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	3 cut(s)	38, 457, 717
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	4 cut(s)	126, 592, 764, 884
BseXI	GCAGC	3 cut(s)	180, 689, 808
Bsh1236I	CGCG	4 cut(s)	353, 355, 474, 851
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	392, 717, 991
BsiEI	CGRYCG	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	876
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	6 cut(s)	172, 217, 487, 714, 887, 988
BslFI	GGGAC	2 cut(s)	42, 233
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	3 cut(s)	292, 366, 537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	2 cut(s)	42, 233
BsnI	GGCC	3 cut(s)	392, 717, 991
BsoBI	CYCGRG	1 cut(s)	866
Bsp1286I	GDGCHC	1 cut(s)	876
BspANI	GGCC	3 cut(s)	392, 717, 991
BspCNI	CTCAG	3 cut(s)	37, 456, 718
BspFNI	CGCG	4 cut(s)	353, 355, 474, 851
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	5 cut(s)	249, 432, 472, 497, 592
BspQI	GCTCTTC	1 cut(s)	66
BsrBI	CCGCTC	2 cut(s)	23, 892
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	2 cut(s)	171, 713
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	2 cut(s)	171, 713
BssECI	CCNNGG	2 cut(s)	459, 849
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	232, 388
Bst6I	CTCTTC	5 cut(s)	66, 123, 181, 400, 680
BstACI	GRCGYC	1 cut(s)	450
BstC8I	GCNNGC	4 cut(s)	380, 415, 719, 776
BstDEI	CTNAG	3 cut(s)	24, 443, 726
BstDSI	CCRYGG	2 cut(s)	459, 849
BstF5I	GGATG	2 cut(s)	904, 921
BstFNI	CGCG	4 cut(s)	353, 355, 474, 851
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	2 cut(s)	355, 682
BstMAI	GTCTC	3 cut(s)	292, 366, 537
BstMCI	CGRYCG	1 cut(s)	633
BstMWI	GCNNNNNNNGC	6 cut(s)	222, 674, 775, 784, 871, 925
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	216, 480, 986
BstUI	CGCG	4 cut(s)	353, 355, 474, 851
BstV1I	GCAGC	3 cut(s)	180, 689, 808
BstV2I	GAAGAC	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	392, 717, 991
BtgI	CCRYGG	2 cut(s)	459, 849
BtgZI	GCGATG	1 cut(s)	750
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	904, 921
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	4 cut(s)	380, 415, 719, 776
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	2 cut(s)	355, 682
Cfr10I	RCCGGY	2 cut(s)	171, 713
Cfr13I	GGNCC	1 cut(s)	484
Cfr42I	CCGCGG	1 cut(s)	852
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	5 cut(s)	175, 262, 511, 781, 793
CviAII	CATG	1 cut(s)	399
CviQI	GTAC	5 cut(s)	175, 262, 511, 781, 793
DdeI	CTNAG	3 cut(s)	24, 443, 726
DraIII	CACNNNGTG	2 cut(s)	388, 532
EaeI	YGGCCR	1 cut(s)	989
Eam1104I	CTCTTC	5 cut(s)	66, 123, 181, 400, 680
EarI	CTCTTC	5 cut(s)	66, 123, 181, 400, 680
EciI	GGCGGA	1 cut(s)	623
Ecl136II	GAGCTC	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	484
Eco47III	AGCGCT	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	866
EcoICRI	GAGCTC	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	876
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	1 cut(s)	402
FaqI	GGGAC	2 cut(s)	42, 233
FatI	CATG	1 cut(s)	398
FauI	CCCGC	2 cut(s)	844, 856
Fnu4HI	GCNGC	6 cut(s)	21, 169, 472, 606, 678, 822
FokI	GGATG	2 cut(s)	911, 928
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	6 cut(s)	21, 169, 472, 606, 678, 822
FspBI	CTAG	5 cut(s)	17, 410, 414, 602, 825
GlaI	GCGC	2 cut(s)	354, 681
GluI	GCNGC	6 cut(s)	21, 169, 472, 606, 678, 822
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	3 cut(s)	392, 717, 991
HapII	CCGG	6 cut(s)	172, 217, 487, 714, 887, 988
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	355, 682
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	1 cut(s)	402
Hin6I	GCGC	2 cut(s)	353, 680
HinP1I	GCGC	2 cut(s)	353, 680
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HinfI	GANTC	3 cut(s)	163, 242, 739
HpaII	CCGG	6 cut(s)	172, 217, 487, 714, 887, 988
HphI	GGTGA	5 cut(s)	172, 220, 299, 703, 866
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	3 cut(s)	254, 291, 834
Hpy188III	TCNNGA	6 cut(s)	157, 493, 527, 568, 644, 760
Hpy8I	GTNNAC	1 cut(s)	693
Hpy99I	CGWCG	4 cut(s)	236, 452, 455, 533
HpyAV	CCTTC	3 cut(s)	132, 141, 416
HpyCH4III	ACNGT	2 cut(s)	232, 388
HpyCH4IV	ACGT	2 cut(s)	450, 531
HpyCH4V	TGCA	4 cut(s)	677, 778, 919, 933
HpyF10VI	GCNNNNNNNGC	6 cut(s)	222, 674, 775, 784, 871, 925
HpyF3I	CTNAG	3 cut(s)	24, 443, 726
HpySE526I	ACGT	2 cut(s)	450, 531
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	402
HspAI	GCGC	2 cut(s)	353, 680
KspI	CCGCGG	1 cut(s)	852
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	4 cut(s)	196, 272, 871, 889
Lsp1109I	GCAGC	3 cut(s)	180, 689, 808
LweI	GCATC	2 cut(s)	234, 906
MaeI	CTAG	5 cut(s)	17, 410, 414, 602, 825
MaeII	ACGT	2 cut(s)	450, 531
MaeIII	GTNAC	3 cut(s)	101, 843, 854
MbiI	CCGCTC	2 cut(s)	23, 892
MboII	GAAGA	7 cut(s)	53, 110, 198, 387, 598, 697, 952
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	876
MluCI	AATT	2 cut(s)	71, 293
MlyI	GAGTC	3 cut(s)	172, 251, 748
MmeI	TCCRAC	1 cut(s)	876
MroXI	GAANNNNTTC	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	769
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	6 cut(s)	172, 217, 487, 714, 887, 988
MspR9I	CCNGG	3 cut(s)	218, 482, 988
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	4 cut(s)	353, 355, 474, 851
MwoI	GCNNNNNNNGC	6 cut(s)	222, 674, 775, 784, 871, 925
NciI	CCSGG	2 cut(s)	218, 988
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	854
PaeR7I	CTCGAG	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	3 cut(s)	228, 456, 552
PdmI	GAANNNNTTC	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	6 cut(s)	22, 170, 473, 607, 679, 823
Ple19I	CGATCG	1 cut(s)	633
PleI	GAGTC	3 cut(s)	171, 250, 747
PpsI	GAGTC	3 cut(s)	171, 250, 747
Psp124BI	GAGCTC	1 cut(s)	876
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	484
PspXI	VCTCGAGB	1 cut(s)	866
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	477
PvuI	CGATCG	1 cut(s)	633
RsaI	GTAC	5 cut(s)	176, 263, 512, 782, 794
RsaNI	GTAC	5 cut(s)	175, 262, 511, 781, 793
RseI	CAYNNNNRTG	1 cut(s)	769
SacI	GAGCTC	1 cut(s)	876
SacII	CCGCGG	1 cut(s)	852
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	6 cut(s)	21, 169, 472, 606, 678, 822
Sau96I	GGNCC	1 cut(s)	484
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	3 cut(s)	172, 251, 748
ScrFI	CCNGG	3 cut(s)	218, 482, 988
SduI	GDGCHC	1 cut(s)	876
SfaNI	GCATC	2 cut(s)	234, 906
Sfr274I	CTCGAG	1 cut(s)	866
Sfr303I	CCGCGG	1 cut(s)	852
SgrBI	CCGCGG	1 cut(s)	852
SinI	GGWCC	1 cut(s)	484
SlaI	CTCGAG	1 cut(s)	866
SmiMI	CAYNNNNRTG	1 cut(s)	769
SmlI	CTYRAG	2 cut(s)	758, 866
SmoI	CTYRAG	2 cut(s)	758, 866
Sse9I	AATT	2 cut(s)	71, 293
SspMI	CTAG	5 cut(s)	17, 410, 414, 602, 825
SstI	GAGCTC	1 cut(s)	876
StyD4I	CCNGG	3 cut(s)	216, 480, 986
TaaI	ACNGT	2 cut(s)	232, 388
TaiI	ACGT	2 cut(s)	453, 534
TaqI	TCGA	4 cut(s)	75, 436, 639, 867
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	71, 293
TatI	WGTACW	4 cut(s)	261, 510, 780, 792
TauI	GCSGC	3 cut(s)	23, 474, 608
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	3 cut(s)	168, 677, 821
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	4 cut(s)	53, 114, 387, 521
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	866
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	5 cut(s)	17, 410, 414, 602, 825
ZraI	GACGTC	1 cut(s)	451
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.