Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015795

Physical Location & Seq

Genomic Coordinates Forward (+)

31811162 .. 31812277

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCGGAGACCTCGAAACCGATCAATCCCGATGAGTCGCAGCTGGTACTTCACCAGTAAAGAGTTGGAGCACAACTCCCCATCTCGCCGCGACGGCATCACCTTGGCCAAAGAGTCCCAACTCCGGTCTGAATACTGCTCCCACATTCAGAAGGTCTGTCAGAATTTGAGGCTGCCTAACTTCACCGTAGCCACTGCAATGTTGCTGTGCCACCGCTTCTACGCTCGTCAGTCTCACGCCAAGAACTGCTGCCACACTGTGGCATCTGCCTGCGTTCTTCTCGCCAGCAAAGTCCAAGACACGCCTCGAGCAGTTAAAGACGTCATGCACGTCGTTTACGGCCGTGAGATACAGGACCAGATCAATGAGATGATGAAGAATTACAAGATCAAAAACCCTCACGACGTTACAAAATGTGACGAGTATGCCATAAAGATAGTTGAGCTTTTGAAGAGGGATAAGAGAGAGCTCATCATGGCGGCGGAGCGGCTAGTGCTGAAGACAATCGGGTTTGATCTTGATGTCGAGCTTCCTTACAAGGCTCTCGCGGCGGCGTTGAAGAGGTTGACGAGTGATGTAGTCCCCGGCCTAGCTGAGGTGGCGTGGAGCCTTGTGGAGGAGTGGCTCAAGACATCACTATGCTTGCAGTACAAGCCAAGATACATTGCGGTTGGGTCAGTTGTTGTGGCTGCTAGGGTTTTGAAATTGAAGCTACCCGCGGGTGAGAAGTGGCTCGAGGAGCTCGGTGTTTTGCCGGAGGTGTTGGACGAGGTCGTTCGCGGGATGCAAAGTAAGATCTGTAAGCAGAAAACAAAGGAGACCATAAGGGTTGTGAGCTTTTATGAGATCATTACTTGCCGGCCATTAGATAGGCAGATAGCAAGGCCTAATGATTTGACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

302

Amino Acids

34.5

Weight (kDa)

9.39

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	20 - 126	1e-14	Cyclin, N-terminal domain
TFIIB	PF00382	46 - 124	3.6e-07	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66400
fragaria_vesca	FvH4_4g33640 FvH4_4g33721 FvH4_6g16340
rosa_chinensis	RchiOBHm_Chr4g0443101
rosa_laevigata	RLG00000005953
rosa_multiflora	Rmu_sc0007968.1_g000015 Rmu_sc0008069.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383730
rosa_rugosa	Rorug04G0344400
rosa_samantha	Rh3AG156900 Rh4BG410300 Rh4CG425900 Rh4DG405300
rosa_wichuraiana	Rw4G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccBSI	CCGCTC	1 cut(s)	487
AccII	CGCG	4 cut(s)	90, 548, 719, 780
AcoI	YGGCCR	3 cut(s)	105, 340, 860
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	518
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	47, 650
AfiI	CCNNNNNNNGG	4 cut(s)	123, 259, 595, 616
AgsI	TTSAA	4 cut(s)	451, 559, 703, 709
AjiI	CACGTC	1 cut(s)	331
AluBI	AGCT	9 cut(s)	42, 445, 469, 529, 593, 712, 742, 837, 902
AluI	AGCT	9 cut(s)	42, 445, 469, 529, 593, 712, 742, 837, 902
Alw21I	GWGCWC	3 cut(s)	72, 471, 744
Alw26I	GTCTC	2 cut(s)	237, 812
Ama87I	CYCGRG	2 cut(s)	306, 734
AoxI	GGCC	5 cut(s)	105, 340, 586, 860, 884
ApeKI	GCWGC	4 cut(s)	39, 172, 249, 689
ApoI	RAATTY	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	43, 91, 175, 734
AvaI	CYCGRG	2 cut(s)	306, 734
AvaII	GGWCC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	471, 744
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	3 cut(s)	72, 471, 744
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	4 cut(s)	51, 159, 236, 676
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	3 cut(s)	109, 327, 355
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	237, 812
BfaI	CTAG	3 cut(s)	491, 590, 693
BglI	GCCNNNNNGGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	795
BisI	GCNGC	9 cut(s)	40, 88, 173, 250, 480, 488, 549, 552, 690
BlsI	GCNGC	9 cut(s)	41, 89, 174, 251, 481, 489, 550, 553, 691
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	2 cut(s)	306, 734
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	608
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	3 cut(s)	105, 272, 774
BpiI	GAAGAC	1 cut(s)	506
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	812
BsaJI	CCNNGG	3 cut(s)	102, 583, 717
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 259, 595, 616
Bse118I	RCCGGY	1 cut(s)	858
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	204, 663
BseDI	CCNNGG	3 cut(s)	102, 583, 717
BseGI	GGATG	1 cut(s)	789
BseLI	CCNNNNNNNGG	4 cut(s)	123, 259, 595, 616
BseMI	GCAATG	2 cut(s)	204, 663
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	632, 752
BseX3I	CGGCCG	1 cut(s)	340
BseXI	GCAGC	4 cut(s)	51, 159, 236, 676
Bsh1236I	CGCG	4 cut(s)	90, 548, 719, 780
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	5 cut(s)	107, 342, 588, 862, 886
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	3 cut(s)	72, 471, 744
BsiHKCI	CYCGRG	2 cut(s)	306, 734
BsiSI	CCGG	4 cut(s)	124, 585, 755, 859
BslFI	GGGAC	2 cut(s)	100, 566
BslI	CCNNNNNNNGG	4 cut(s)	123, 259, 595, 616
BsmAI	GTCTC	2 cut(s)	237, 812
BsmFI	GGGAC	2 cut(s)	100, 566
BsnI	GGCC	5 cut(s)	107, 342, 588, 862, 886
Bso31I	GGTCTC	1 cut(s)	812
BsoBI	CYCGRG	2 cut(s)	306, 734
Bsp1286I	GDGCHC	3 cut(s)	72, 471, 744
Bsp143I	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
BspANI	GGCC	5 cut(s)	107, 342, 588, 862, 886
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	4 cut(s)	90, 548, 719, 780
BspLI	GGNNCC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	812
BsrBI	CCGCTC	1 cut(s)	487
BsrDI	GCAATG	2 cut(s)	204, 663
BsrFI	RCCGGY	1 cut(s)	858
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	858
BssECI	CCNNGG	3 cut(s)	102, 583, 717
BssMI	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	187, 259
Bst6I	CTCTTC	2 cut(s)	446, 554
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	271, 286, 644, 860
BstDEI	CTNAG	2 cut(s)	594, 903
BstDSI	CCRYGG	1 cut(s)	717
BstENI	CCTNNNNNAGG	2 cut(s)	593, 614
BstF5I	GGATG	1 cut(s)	789
BstFNI	CGCG	4 cut(s)	90, 548, 719, 780
BstKTI	GATC	6 cut(s)	23, 363, 390, 517, 798, 849
BstMAI	GTCTC	2 cut(s)	237, 812
BstMBI	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 493, 548, 599, 652, 739
BstSCI	CCNGG	1 cut(s)	583
BstUI	CGCG	4 cut(s)	90, 548, 719, 780
BstV1I	GCAGC	4 cut(s)	51, 159, 236, 676
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	795
BstYI	RGATCY	1 cut(s)	795
BstZI	CGGCCG	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	107, 342, 588, 862, 886
BtgI	CCRYGG	1 cut(s)	717
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	789
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 255
Cac8I	GCNNGC	4 cut(s)	271, 286, 644, 860
Cfr10I	RCCGGY	1 cut(s)	858
Cfr13I	GGNCC	1 cut(s)	355
Cfr42I	CCGCGG	1 cut(s)	720
Csp6I	GTAC	2 cut(s)	46, 649
CviAII	CATG	2 cut(s)	325, 475
CviQI	GTAC	2 cut(s)	46, 649
DdeI	CTNAG	2 cut(s)	594, 903
DpnI	GATC	6 cut(s)	22, 362, 389, 516, 797, 848
DpnII	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
DraIII	CACNNNGTG	1 cut(s)	259
EaeI	YGGCCR	3 cut(s)	105, 340, 860
EagI	CGGCCG	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	446, 554
EarI	CTCTTC	2 cut(s)	446, 554
EciI	GGCGGA	1 cut(s)	497
Ecl136II	GAGCTC	2 cut(s)	469, 742
EclXI	CGGCCG	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	886
Eco24I	GRGCYC	2 cut(s)	471, 744
Eco31I	GGTCTC	1 cut(s)	812
Eco47I	GGWCC	1 cut(s)	355
Eco52I	CGGCCG	1 cut(s)	340
Eco53kI	GAGCTC	2 cut(s)	469, 742
Eco57I	CTGAAG	1 cut(s)	518
Eco88I	CYCGRG	2 cut(s)	306, 734
EcoICRI	GAGCTC	2 cut(s)	469, 742
EcoNI	CCTNNNNNAGG	2 cut(s)	593, 614
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	471, 744
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	328, 478
FaiI	YATR	7 cut(s)	326, 426, 431, 476, 640, 824, 843
FaqI	GGGAC	2 cut(s)	100, 566
FatI	CATG	2 cut(s)	324, 474
FauI	CCCGC	3 cut(s)	712, 724, 773
Fnu4HI	GCNGC	9 cut(s)	40, 88, 173, 250, 480, 488, 549, 552, 690
FokI	GGATG	1 cut(s)	796
FriOI	GRGCYC	2 cut(s)	471, 744
Fsp4HI	GCNGC	9 cut(s)	40, 88, 173, 250, 480, 488, 549, 552, 690
FspBI	CTAG	3 cut(s)	491, 590, 693
GluI	GCNGC	9 cut(s)	40, 88, 173, 250, 480, 488, 549, 552, 690
HaeIII	GGCC	5 cut(s)	107, 342, 588, 862, 886
HapII	CCGG	4 cut(s)	124, 585, 755, 859
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	328, 478
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	2 cut(s)	34, 113
HpaII	CCGG	4 cut(s)	124, 585, 755, 859
HphI	GGTGA	4 cut(s)	43, 91, 175, 734
Hpy166II	GTNNAC	2 cut(s)	337, 567
Hpy188I	TCNGA	3 cut(s)	130, 150, 162
Hpy188III	TCNNGA	4 cut(s)	28, 401, 518, 628
Hpy8I	GTNNAC	2 cut(s)	337, 567
Hpy99I	CGWCG	3 cut(s)	95, 335, 407
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	187, 259
HpyCH4IV	ACGT	3 cut(s)	321, 330, 405
HpyCH4V	TGCA	4 cut(s)	197, 328, 646, 787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 493, 548, 599, 652, 739
HpyF3I	CTNAG	2 cut(s)	594, 903
HpySE526I	ACGT	3 cut(s)	321, 330, 405
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	328, 478
KroI	GCCGGC	1 cut(s)	858
KroNI	GCCGGC	1 cut(s)	860
KspI	CCGCGG	1 cut(s)	720
Kzo9I	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
LmnI	GCTCC	5 cut(s)	67, 143, 484, 606, 739
Lsp1109I	GCAGC	4 cut(s)	51, 159, 236, 676
LweI	GCATC	3 cut(s)	105, 272, 774
MaeI	CTAG	3 cut(s)	491, 590, 693
MaeII	ACGT	3 cut(s)	321, 330, 405
MaeIII	GTNAC	2 cut(s)	406, 416
MalI	GATC	6 cut(s)	22, 362, 389, 516, 797, 848
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
MboII	GAAGA	5 cut(s)	269, 388, 463, 511, 571
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	3 cut(s)	72, 471, 744
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	3 cut(s)	163, 379, 704
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	43, 122
MmeI	TCCRAC	2 cut(s)	45, 744
Mox20I	TGGCCA	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	858
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	197, 637
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	42, 719
MspI	CCGG	4 cut(s)	124, 585, 755, 859
MspR9I	CCNGG	1 cut(s)	585
MvnI	CGCG	4 cut(s)	90, 548, 719, 780
MwoI	GCNNNNNNNGC	6 cut(s)	93, 493, 548, 599, 652, 739
NaeI	GCCGGC	1 cut(s)	860
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
NgoMIV	GCCGGC	1 cut(s)	858
NlaIII	CATG	2 cut(s)	328, 478
NlaIV	GGNNCC	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	416
PaeR7I	CTCGAG	2 cut(s)	306, 734
PceI	AGGCCT	1 cut(s)	886
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	860
PflFI	GACNNNGTC	1 cut(s)	770
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	9 cut(s)	41, 89, 174, 251, 481, 489, 550, 553, 691
PleI	GAGTC	2 cut(s)	42, 121
PpsI	GAGTC	2 cut(s)	42, 121
Psp124BI	GAGCTC	2 cut(s)	471, 744
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	1 cut(s)	355
PspXI	VCTCGAGB	2 cut(s)	306, 734
PsuI	RGATCY	1 cut(s)	795
PsyI	GACNNNGTC	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	47, 650
RsaNI	GTAC	2 cut(s)	46, 649
RseI	CAYNNNNRTG	2 cut(s)	197, 637
SacI	GAGCTC	2 cut(s)	471, 744
SacII	CCGCGG	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	9 cut(s)	40, 88, 173, 250, 480, 488, 549, 552, 690
Sau3AI	GATC	6 cut(s)	20, 360, 387, 514, 795, 846
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	2 cut(s)	43, 122
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	3 cut(s)	72, 471, 744
SfaNI	GCATC	3 cut(s)	105, 272, 774
Sfr274I	CTCGAG	2 cut(s)	306, 734
Sfr303I	CCGCGG	1 cut(s)	720
SgrBI	CCGCGG	1 cut(s)	720
SinI	GGWCC	1 cut(s)	355
SlaI	CTCGAG	2 cut(s)	306, 734
SmiMI	CAYNNNNRTG	2 cut(s)	197, 637
SmlI	CTYRAG	3 cut(s)	306, 626, 734
SmoI	CTYRAG	3 cut(s)	306, 626, 734
Sse9I	AATT	3 cut(s)	163, 379, 704
SseBI	AGGCCT	1 cut(s)	886
SspMI	CTAG	3 cut(s)	491, 590, 693
SstI	GAGCTC	2 cut(s)	471, 744
StuI	AGGCCT	1 cut(s)	886
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	187, 259
TaiI	ACGT	3 cut(s)	324, 333, 408
TaqI	TCGA	4 cut(s)	13, 307, 525, 735
TasI	AATT	3 cut(s)	163, 379, 704
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	5 cut(s)	90, 482, 490, 551, 554
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	199, 262
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	4 cut(s)	39, 172, 249, 689
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	199, 262
Tth111I	GACNNNGTC	1 cut(s)	770
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	355
XagI	CCTNNNNNAGG	2 cut(s)	593, 614
XapI	RAATTY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	2 cut(s)	306, 734
XspI	CTAG	3 cut(s)	491, 590, 693
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.