Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010688

Physical Location & Seq

Genomic Coordinates Forward (+)

24959250 .. 24961616

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGAGGTGTTACATCATCGATCGCTGCTAAATTTGCTTTCTTTCCACCAACGCCACCGTCGTATGAGGTTATAGCCGACGATAGCTGCGGTGGACGTTTATACATACCGGAGATTCCTCGCCGTGATGATGTTGATATATTGAAGCTTCGTACTCGTTGTGGTAATGAGATCGTTGCTGTTTATGTGAAACATTCAAAAGCTAATGGCACGCTTTTGTATTCTCATGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTCGTTGAGCTTAGCAATCGCCTTCGCGTCAATCTTATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTGGACAGGCTAGCGAGTGTAATACATATGCTGATATAGAGGCATCATATAAATGCCTCAAGGAAAAGTACGGTGTAAAAGACGATCAACTGATAGTATATGGTCAATCTGTTGGTAGTGGACCTACGGTTGATCTAGCTTCACGCACACCTAACTTAAGAGGCGTGGTTTTACAGTGTCCTATCCTGTCTGGGATGAGGGTTTTGTATCCTGTGAAATGTACATATTGGTTTGACATTTACAAGAATATTGACAAGATCGGCTCAGTTACCTGTCCTGTATTAGTAATCCATGGTACTGCGGATGAAGTAGTTGATTGGTCTCACGGAAAACGGCTCTGGGAACTCAGCAAAGAGAAGTATGAACCTTTGTGGATAAGTGGAGGTGGACACTGTGACCTTGAACTCTATCCAGATTTCATCAGACATCTGAAGAAATTTGTTGTATCACTTGGCAACAAACAAGCAGAGCAAGCTCCCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1 Hydrolase_4

Protein Analysis

272

Amino Acids

30.21

Weight (kDa)

6.31

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	67 - 176	8.4e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	71 - 173	4e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66900 AT5G38220 AT5G38220
malus_domestica	MD09G1255000.v1.1 MD17G1247600.v1.1
prunus_persica	Prupe.3G146300_v2.0.a1
pyrus_communis	pycom17g24890
rosa_chinensis	RchiOBHm_Chr3g0495091
rosa_laevigata	RLG00000022643
rosa_multiflora	Rmu_co8340507.1_g000001 Rmu_sc0000340.1_g000019
rosa_roxburghii	Rroxscaffold_6G00390730
rosa_rugosa	Rorug03G0269900 Rorug03G0269900 Rorug03G0269900
rosa_samantha	Rh3AG319000 Rh3BG354000 Rh3DG353200
rosa_wichuraiana	Rw0G015010 Rw3G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	291
AciI	CCGC	2 cut(s)	90, 635
AcsI	RAATTY	2 cut(s)	32, 770
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	4 cut(s)	154, 404, 556, 631
AflII	CTTAAG	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	145, 198, 737
AluBI	AGCT	7 cut(s)	87, 148, 203, 262, 274, 473, 809
AluI	AGCT	7 cut(s)	87, 148, 203, 262, 274, 473, 809
Alw26I	GTCTC	1 cut(s)	660
ApeKI	GCWGC	3 cut(s)	26, 87, 236
ApoI	RAATTY	2 cut(s)	32, 770
AspS9I	GGNCC	1 cut(s)	455
AsuNHI	GCTAGC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	13, 74, 223
BceAI	ACGGC	2 cut(s)	108, 683
BciVI	GTATCC	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	345, 470
BfrI	CTTAAG	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	552
BisI	GCNGC	3 cut(s)	27, 88, 237
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	3 cut(s)	28, 89, 238
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmsI	GCATC	1 cut(s)	386
BmtI	GCTAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	377
Bsa29I	ATCGAT	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	625
BsaWI	WCCGGW	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	2 cut(s)	534, 643
BseMII	CTCAG	2 cut(s)	612, 694
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	13, 74, 223
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	660
Bso31I	GGTCTC	1 cut(s)	660
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	5 cut(s)	21, 171, 418, 466, 591
Bsp1720I	GCTNAGC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	625
BspACI	CCGC	2 cut(s)	90, 635
BspCNI	CTCAG	2 cut(s)	611, 693
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	291
BspOI	GCTAGC	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	5 cut(s)	21, 171, 418, 466, 591
BssT1I	CCWWGG	1 cut(s)	625
Bst4CI	ACNGT	5 cut(s)	60, 407, 463, 510, 728
BstAFI	CTTAAG	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	212, 346, 807
BstDEI	CTNAG	3 cut(s)	275, 598, 680
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	2 cut(s)	534, 643
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	5 cut(s)	24, 174, 421, 469, 594
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	5 cut(s)	21, 171, 418, 466, 591
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 806
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	13, 74, 223
Bsu15I	ATCGAT	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	625
BtsCI	GGATG	2 cut(s)	534, 643
BtsIMutI	CAGTG	2 cut(s)	515, 724
Cac8I	GCNNGC	3 cut(s)	212, 346, 807
Cfr13I	GGNCC	1 cut(s)	455
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	153, 403, 555, 630
CviAII	CATG	2 cut(s)	227, 626
CviQI	GTAC	4 cut(s)	153, 403, 555, 630
DdeI	CTNAG	3 cut(s)	275, 598, 680
DpnI	GATC	5 cut(s)	23, 173, 420, 468, 593
DpnII	GATC	5 cut(s)	21, 171, 418, 466, 591
Eco130I	CCWWGG	1 cut(s)	625
Eco31I	GGTCTC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	2 cut(s)	230, 629
FatI	CATG	2 cut(s)	226, 625
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	3 cut(s)	27, 88, 237
FokI	GGATG	2 cut(s)	541, 650
Fsp4HI	GCNGC	3 cut(s)	27, 88, 237
FspBI	CTAG	2 cut(s)	345, 470
GluI	GCNGC	3 cut(s)	27, 88, 237
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	230, 629
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	4 cut(s)	95, 333, 455, 722
Hpy188I	TCNGA	2 cut(s)	758, 765
Hpy188III	TCNNGA	1 cut(s)	746
Hpy8I	GTNNAC	4 cut(s)	95, 333, 455, 722
Hpy99I	CGWCG	2 cut(s)	64, 83
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	5 cut(s)	60, 407, 463, 510, 728
HpyCH4IV	ACGT	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 806
HpyF3I	CTNAG	3 cut(s)	275, 598, 680
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	230, 629
Kzo9I	GATC	5 cut(s)	21, 171, 418, 466, 591
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	3 cut(s)	13, 74, 223
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	2 cut(s)	345, 470
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	4 cut(s)	10, 230, 601, 728
MalI	GATC	5 cut(s)	23, 173, 420, 468, 593
MboI	GATC	5 cut(s)	21, 171, 418, 466, 591
MboII	GAAGA	1 cut(s)	778
MluCI	AATT	2 cut(s)	32, 770
MnlI	CCTC	7 cut(s)	61, 129, 367, 401, 488, 525, 710
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	385
MspCI	CTTAAG	1 cut(s)	490
MspI	CCGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	35, 806
NcoI	CCATGG	1 cut(s)	625
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	5 cut(s)	21, 171, 418, 466, 591
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	2 cut(s)	230, 629
NmuCI	GTSAC	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	28, 89, 238
Ple19I	CGATCG	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	455
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	4 cut(s)	154, 404, 556, 631
RsaNI	GTAC	4 cut(s)	153, 403, 555, 630
RseI	CAYNNNNRTG	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	3 cut(s)	27, 88, 237
Sau3AI	GATC	5 cut(s)	21, 171, 418, 466, 591
Sau96I	GGNCC	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	386
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	392, 490
SmoI	CTYRAG	2 cut(s)	392, 490
Sse9I	AATT	2 cut(s)	32, 770
SsiI	CCGC	2 cut(s)	90, 635
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	345, 470
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	5 cut(s)	60, 407, 463, 510, 728
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	32, 770
TatI	WGTACW	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	2 cut(s)	515, 731
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	3 cut(s)	26, 87, 236
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	3 cut(s)	654, 711, 742
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	2 cut(s)	515, 731
Vha464I	CTTAAG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	2 cut(s)	32, 770
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	2 cut(s)	345, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.