Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010688

Physical Location & Seq

Genomic Coordinates Reverse (-)

23116282 .. 23119766

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGCGGAGTGACCTCTTCGATCGCAGCCAAGTTCGCTTTTTTCCCGCCGAGTCCGCCGTCGTACACAGTCGTCGCCGACGAGTCGTGTGAAGGGAGGTTCCTCATTCCGGAGGTACCGAGGAGGGACGACGTGGATGTGCTGAAGCTCAGGAATCGCCGGGGGAATGAAATCGTGGCCGTACACGTCAAGCACCCCAAGGCCTCTGCAACTATGCTTTACTCCCATGGAAATGCTGCTGATTTGGGGCAGATGTTTGAGCTTTTCGTCGAATTGAGTACTCGCCTTCGGATTAATTTGATGGGGTATGATTACTCTGGTTATGGACAGTCAACTGGAAAGGCAACTGAGTGTAATACGTATGCGGACATTGATGCAGCTTATAAATGCCTCAAGGAGAAATACGGGGTCAAAGATGAACAACTAATATTATATGGTCAGTCTGTTGGTAGTGGTCCCACTGTCGATCTTGCTTCACGTCTACCAACCTTGAGAGGTGTGGTATTACACAGTCCCATTTTGTCTGGGCTGAGGGTGTTGTACCCTGTCAAGCGGACATACTGGTTTGATATTTACAAGAATATCGACAAAATTTCAATGGTGAACTGTCCTGTCCTGGTTATACATGGGACAGCAGACGAGGTTGTAGATTCGTCCCATGGGAAGCAGCTTTGGGTACTTTGCAAGGAAAAGTACGACCCCTTATGGCTCAGTGGAGGTGGGCACGGCAATCTTGAGCTTTACCCAGAATTTATCAAACATCTAAAGAAATTTGTACACAGCCTTGGCAAGTCAAAATCGACCACAAATGGTTCTAGAACAAGTACAGTAGATTCTGCGAACGAGAACAAACCATCTGAAACCGGTACTTCAGATTCATGCGAAGGAGGTTCTGATCGTCCAGAAGTTTCTAGAAACAGTTTAGATAGTCGACTAGAGAAGTCTAAAAAGTCGAACAAGCCCGAAAAGTCTCGGATGAGCACTGACCGAGCCGACACGTTTAGGAGAAAGAAGGGTTTAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1 Hydrolase_4

Protein Analysis

342

Amino Acids

37.71

Weight (kDa)

9.02

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66900 AT5G38220 AT5G38220
malus_domestica	MD09G1255000.v1.1 MD17G1247600.v1.1
prunus_persica	Prupe.3G146300_v2.0.a1
pyrus_communis	pycom17g24890
rosa_chinensis	RchiOBHm_Chr3g0495091
rosa_laevigata	RLG00000022643
rosa_multiflora	Rmu_co8340507.1_g000001 Rmu_sc0000340.1_g000019
rosa_roxburghii	Rroxscaffold_6G00390730
rosa_rugosa	Rorug03G0269900 Rorug03G0269900 Rorug03G0269900
rosa_samantha	Rh3AG319000 Rh3BG354000 Rh3DG353200
rosa_wichuraiana	Rw0G015010 Rw3G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
Acc65I	GGTACC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	115
AccI	GTMKAC	2 cut(s)	481, 931
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	5 cut(s)	6, 47, 56, 365, 553
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	591, 749, 770
AcuI	CTGAAG	2 cut(s)	164, 855
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	2 cut(s)	184, 996
AgeI	ACCGGT	1 cut(s)	863
AgsI	TTSAA	1 cut(s)	597
AjiI	CACGTC	3 cut(s)	133, 187, 479
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	5 cut(s)	148, 262, 380, 670, 739
AluI	AGCT	5 cut(s)	148, 262, 380, 670, 739
Alw21I	GWGCWC	1 cut(s)	983
Alw26I	GTCTC	1 cut(s)	975
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	2 cut(s)	177, 201
ApeKI	GCWGC	4 cut(s)	26, 236, 377, 667
ApoI	RAATTY	3 cut(s)	591, 749, 770
AseI	ATTAAT	1 cut(s)	294
AsiGI	ACCGGT	1 cut(s)	863
Asp718I	GGTACC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	613
AvaII	GGWCC	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	983
BbvCI	CCTCAGC	1 cut(s)	530
BbvI	GCAGC	4 cut(s)	38, 223, 389, 679
BccI	CCATC	2 cut(s)	295, 862
BceAI	ACGGC	3 cut(s)	43, 164, 742
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	975
BfaI	CTAG	3 cut(s)	816, 912, 935
BisI	GCNGC	4 cut(s)	27, 237, 378, 668
BlsI	GCNGC	4 cut(s)	28, 238, 379, 669
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	2 cut(s)	161, 617
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	3 cut(s)	133, 187, 479
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	3 cut(s)	101, 117, 457
BmrFI	CCNGG	2 cut(s)	161, 617
BmsI	GCATC	1 cut(s)	364
Bpu10I	CCTNAGC	2 cut(s)	149, 530
BpuEI	CTTGAG	3 cut(s)	377, 511, 755
BpuMI	CCSGG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	360
BsaJI	CCNNGG	6 cut(s)	119, 160, 198, 226, 658, 784
BsaWI	WCCGGW	2 cut(s)	109, 863
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	863
Bse1I	ACTGG	2 cut(s)	340, 566
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	6 cut(s)	119, 160, 198, 226, 658, 784
BseGI	GGATG	2 cut(s)	142, 981
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	4 cut(s)	163, 339, 521, 724
BseNI	ACTGG	2 cut(s)	340, 566
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	4 cut(s)	38, 223, 389, 679
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	179, 203
BshNI	GGYRCC	1 cut(s)	115
BshTI	ACCGGT	1 cut(s)	863
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	983
BsiSI	CCGG	3 cut(s)	110, 160, 864
BslFI	GGGAC	5 cut(s)	140, 441, 498, 640, 643
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	975
BsmFI	GGGAC	5 cut(s)	140, 441, 498, 640, 643
BsnI	GGCC	2 cut(s)	179, 203
Bsp1286I	GDGCHC	2 cut(s)	726, 983
Bsp13I	TCCGGA	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	3 cut(s)	21, 466, 895
Bsp19I	CCATGG	2 cut(s)	226, 658
BspACI	CCGC	5 cut(s)	6, 47, 56, 365, 553
BspANI	GGCC	2 cut(s)	179, 203
BspCNI	CTCAG	4 cut(s)	162, 340, 522, 723
BspEI	TCCGGA	1 cut(s)	109
BspLI	GGNNCC	3 cut(s)	101, 117, 457
BspT107I	GGYRCC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	863
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	2 cut(s)	340, 566
BssAI	RCCGGY	1 cut(s)	863
BssECI	CCNNGG	6 cut(s)	119, 160, 198, 226, 658, 784
BssMI	GATC	3 cut(s)	21, 466, 895
BssT1I	CCWWGG	4 cut(s)	198, 226, 658, 784
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	7 cut(s)	70, 330, 463, 512, 608, 829, 920
Bst6I	CTCTTC	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	775
BstBAI	YACGTR	1 cut(s)	360
BstDEI	CTNAG	4 cut(s)	149, 348, 530, 710
BstDSI	CCRYGG	2 cut(s)	226, 658
BstF5I	GGATG	2 cut(s)	142, 981
BstKTI	GATC	3 cut(s)	24, 469, 898
BstMAI	GTCTC	1 cut(s)	975
BstMBI	GATC	3 cut(s)	21, 466, 895
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 55
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	159, 615
BstSLI	GKGCMC	1 cut(s)	726
BstSNI	TACGTA	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	38, 223, 389, 679
BsuRI	GGCC	2 cut(s)	179, 203
BtgI	CCRYGG	2 cut(s)	226, 658
BtrI	CACGTC	3 cut(s)	133, 187, 479
BtsCI	GGATG	2 cut(s)	142, 981
BtsIMutI	CAGTG	3 cut(s)	459, 718, 981
Cfr10I	RCCGGY	1 cut(s)	863
Cfr13I	GGNCC	1 cut(s)	455
CspAI	ACCGGT	1 cut(s)	863
CviAII	CATG	4 cut(s)	227, 626, 659, 879
DdeI	CTNAG	4 cut(s)	149, 348, 530, 710
DpnI	GATC	3 cut(s)	23, 468, 897
DpnII	GATC	3 cut(s)	21, 466, 895
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EciI	GGCGGA	2 cut(s)	21, 45
Eco105I	TACGTA	1 cut(s)	360
Eco130I	CCWWGG	4 cut(s)	198, 226, 658, 784
Eco147I	AGGCCT	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	164, 855
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	4 cut(s)	198, 226, 658, 784
ErhI	CCWWGG	4 cut(s)	198, 226, 658, 784
FaeI	CATG	4 cut(s)	230, 629, 662, 882
FaqI	GGGAC	5 cut(s)	140, 441, 498, 640, 643
FatI	CATG	4 cut(s)	226, 625, 658, 878
FauI	CCCGC	1 cut(s)	54
FblI	GTMKAC	2 cut(s)	481, 931
Fnu4HI	GCNGC	4 cut(s)	27, 237, 378, 668
FokI	GGATG	2 cut(s)	149, 988
Fsp4HI	GCNGC	4 cut(s)	27, 237, 378, 668
FspBI	CTAG	3 cut(s)	816, 912, 935
GluI	GCNGC	4 cut(s)	27, 237, 378, 668
HaeIII	GGCC	2 cut(s)	179, 203
HapII	CCGG	3 cut(s)	110, 160, 864
Hin1II	CATG	4 cut(s)	230, 629, 662, 882
HincII	GTYRAC	2 cut(s)	333, 932
HindII	GTYRAC	2 cut(s)	333, 932
HinfI	GANTC	6 cut(s)	52, 83, 154, 650, 833, 875
HpaII	CCGG	3 cut(s)	110, 160, 864
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	7 cut(s)	66, 184, 333, 482, 604, 778, 932
Hpy188I	TCNGA	5 cut(s)	291, 859, 874, 895, 975
Hpy188III	TCNNGA	6 cut(s)	110, 151, 734, 816, 902, 912
Hpy8I	GTNNAC	7 cut(s)	66, 184, 333, 482, 604, 778, 932
Hpy99I	CGWCG	5 cut(s)	64, 77, 83, 134, 272
HpyAV	CCTTC	4 cut(s)	86, 296, 878, 1006
HpyCH4III	ACNGT	7 cut(s)	70, 330, 463, 512, 608, 829, 920
HpyCH4IV	ACGT	5 cut(s)	132, 186, 359, 478, 998
HpyCH4V	TGCA	3 cut(s)	209, 377, 684
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 55
HpyF3I	CTNAG	4 cut(s)	149, 348, 530, 710
HpySE526I	ACGT	5 cut(s)	132, 186, 359, 478, 998
Hsp92II	CATG	4 cut(s)	230, 629, 662, 882
Kpn2I	TCCGGA	1 cut(s)	109
KpnI	GGTACC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	21, 466, 895
Lsp1109I	GCAGC	4 cut(s)	38, 223, 389, 679
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	816, 912, 935
MaeII	ACGT	5 cut(s)	132, 186, 359, 478, 998
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	23, 468, 897
MboI	GATC	3 cut(s)	21, 466, 895
MboII	GAAGA	1 cut(s)	9
MhlI	GDGCHC	2 cut(s)	726, 983
MluCI	AATT	5 cut(s)	272, 295, 591, 749, 770
MlyI	GAGTC	2 cut(s)	61, 92
MroI	TCCGGA	1 cut(s)	109
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	3 cut(s)	110, 160, 864
MspR9I	CCNGG	2 cut(s)	161, 617
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	2 cut(s)	35, 55
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	2 cut(s)	226, 658
NdeII	GATC	3 cut(s)	21, 466, 895
NlaIII	CATG	4 cut(s)	230, 629, 662, 882
NlaIV	GGNNCC	3 cut(s)	101, 117, 457
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	154, 650, 833, 875
PinAI	ACCGGT	1 cut(s)	863
PkrI	GCNGC	4 cut(s)	28, 238, 379, 669
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	2 cut(s)	60, 91
PpsI	GAGTC	2 cut(s)	60, 91
Ppu21I	YACGTR	1 cut(s)	360
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	101, 117, 457
PspPI	GGNCC	1 cut(s)	455
PvuI	CGATCG	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	930
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	27, 237, 378, 668
Sau3AI	GATC	3 cut(s)	21, 466, 895
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	2 cut(s)	61, 92
ScrFI	CCNGG	2 cut(s)	161, 617
SduI	GDGCHC	2 cut(s)	726, 983
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	3 cut(s)	392, 490, 734
SmoI	CTYRAG	3 cut(s)	392, 490, 734
SnaBI	TACGTA	1 cut(s)	360
Sse9I	AATT	5 cut(s)	272, 295, 591, 749, 770
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	5 cut(s)	6, 47, 56, 365, 553
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	3 cut(s)	816, 912, 935
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	159, 615
StyI	CCWWGG	4 cut(s)	198, 226, 658, 784
TaaI	ACNGT	7 cut(s)	70, 330, 463, 512, 608, 829, 920
TaiI	ACGT	5 cut(s)	135, 189, 362, 481, 1001
TaqI	TCGA	7 cut(s)	20, 270, 465, 585, 800, 931, 953
TaqII	GACCGA	1 cut(s)	1002
TasI	AATT	5 cut(s)	272, 295, 591, 749, 770
TatI	WGTACW	3 cut(s)	278, 775, 824
TfiI	GAWTC	4 cut(s)	154, 650, 833, 875
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	3 cut(s)	466, 718, 988
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	26, 236, 377, 667
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	183, 432, 867
TspRI	CASTG	3 cut(s)	466, 718, 988
VpaK11BI	GGWCC	1 cut(s)	455
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	3 cut(s)	591, 749, 770
XbaI	TCTAGA	2 cut(s)	815, 911
XmiI	GTMKAC	2 cut(s)	481, 931
XspI	CTAG	3 cut(s)	816, 912, 935
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.