Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010688

Physical Location & Seq

Genomic Coordinates Forward (+)

15268674 .. 15271456

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGAGGAGTAACTTCATCAATCGCTGCAAAATTCGCTTTTTTCCCGCCATCACCACCGTCTTATGGATTTGTTTCCGACGTTGACCGATTATACATAACAGAAGTACCTCGCCGTGATGATGTAGATGTATTGAAGCTAAAGACTCGTCGTGGTAACGAGATTGTAGCTATTTATATTAAACATCCTAAAGCTAATGGTACGCTTTTGTATTCACATGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAGGCAAGTGAATGTAATACCTATGCTGATATAGATGCAGCATATACTTGCCTCAAGGAACATTATGGTGTAAAAGATGATCAACTGATATTATATGGTCAGTCTGTTGGTAGTGGACCAACGATTGATTTAGCTTCACGCACGCCTAATTTGCGAGGAGTGGTTTTGCACAGCCCTATTCTCTCTGGGATGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAGAATATTGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAATCCATGGGACTGCAGATGAAGTGGTTGATTGTTCTCATGGAAAACAACTTTGGGAACTTTCAAAAGAAAAGTATGAGCCTTTATGGGTATCTGGAGGAGGACACTGCAATCTAGAACTCTATCCAGAGTTCATAAAACATCTGAAGAAATACGTAATTTCTATTTCCAAGGGACCAAGAACTGGTTCGAACAAGACTGCAACGACGGATGCAGCCAAAAAACAGAGCAAGCCTGCAGAGAACGGGCGTGCTGATACGTTTCAACTTGGCTGTTGCCTTCCAGAAGTTTCTAGAAACAGTGTAGACAGTCAGCTGGAGAAATCTAAGAAGACTAGTAAACCCGAGAAGTCTCGTATGAGCATTGATAGGTTTAGAAGGAAAAAAGGTTCAGTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1 Hydrolase_4

Protein Analysis

336

Amino Acids

37.4

Weight (kDa)

9.16

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	64 - 173	5.4e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	68 - 170	1.4e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66900 AT5G38220 AT5G38220
malus_domestica	MD09G1255000.v1.1 MD17G1247600.v1.1
prunus_persica	Prupe.3G146300_v2.0.a1
pyrus_communis	pycom17g24890
rosa_chinensis	RchiOBHm_Chr3g0495091
rosa_laevigata	RLG00000022643
rosa_multiflora	Rmu_co8340507.1_g000001 Rmu_sc0000340.1_g000019
rosa_roxburghii	Rroxscaffold_6G00390730
rosa_rugosa	Rorug03G0269900 Rorug03G0269900 Rorug03G0269900
rosa_samantha	Rh3AG319000 Rh3BG354000 Rh3DG353200
rosa_wichuraiana	Rw0G015010 Rw3G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	323, 915
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	776
AfaI	GTAC	3 cut(s)	108, 202, 547
AfiI	CCNNNNNNNGG	2 cut(s)	65, 794
AgsI	TTSAA	3 cut(s)	136, 675, 875
AhlI	ACTAGT	1 cut(s)	944
AjuI	GAANNNNNNNTTGG	4 cut(s)	646, 678, 781, 813
AloI	GAACNNNNNNTCC	1 cut(s)	982
AluBI	AGCT	6 cut(s)	139, 170, 194, 253, 464, 925
AluI	AGCT	6 cut(s)	139, 170, 194, 253, 464, 925
Alw26I	GTCTC	2 cut(s)	281, 966
Ama87I	CYCGRG	1 cut(s)	953
ApeKI	GCWGC	4 cut(s)	26, 227, 368, 824
ApoI	RAATTY	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	796
AspS9I	GGNCC	2 cut(s)	446, 785
AsuHPI	GGTGA	1 cut(s)	45
AsuII	TTCGAA	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	953
AvaII	GGWCC	2 cut(s)	446, 785
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BbsI	GAAGAC	1 cut(s)	947
BbvI	GCAGC	4 cut(s)	13, 214, 380, 836
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	543
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	281, 966
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	3 cut(s)	725, 903, 945
BfmI	CTRYAG	2 cut(s)	624, 846
BfuI	GTATCC	1 cut(s)	543
BisI	GCNGC	4 cut(s)	27, 228, 369, 825
BlsI	GCNGC	4 cut(s)	28, 229, 370, 826
Bme18I	GGWCC	2 cut(s)	446, 785
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	2 cut(s)	446, 785
BmiI	GGNNCC	1 cut(s)	786
BmsI	GCATC	2 cut(s)	355, 811
BpiI	GAAGAC	1 cut(s)	947
BpmI	CTGGAG	2 cut(s)	726, 947
Bpu14I	TTCGAA	1 cut(s)	800
BpuEI	CTTGAG	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	766
BsaJI	CCNNGG	2 cut(s)	616, 780
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 794
Bse1I	ACTGG	2 cut(s)	331, 799
BseDI	CCNNGG	2 cut(s)	616, 780
BseGI	GGATG	3 cut(s)	184, 525, 826
BseLI	CCNNNNNNNGG	2 cut(s)	65, 794
BseNI	ACTGG	2 cut(s)	331, 799
BseRI	GAGGAG	3 cut(s)	21, 501, 723
BseXI	GCAGC	4 cut(s)	13, 214, 380, 836
BsgI	GTGCAG	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	953
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	634, 798
BslI	CCNNNNNNNGG	2 cut(s)	65, 794
BsmAI	GTCTC	2 cut(s)	281, 966
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	634, 798
BsoBI	CYCGRG	1 cut(s)	953
Bsp119I	TTCGAA	1 cut(s)	800
Bsp143I	GATC	2 cut(s)	409, 582
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	786
BspMAI	CTGCAG	2 cut(s)	628, 850
BspT104I	TTCGAA	1 cut(s)	800
BsrI	ACTGG	2 cut(s)	331, 799
BssECI	CCNNGG	2 cut(s)	616, 780
BssMI	GATC	2 cut(s)	409, 582
BssT1I	CCWWGG	2 cut(s)	616, 780
Bst4CI	ACNGT	3 cut(s)	60, 911, 920
BstBAI	YACGTR	1 cut(s)	766
BstBI	TTCGAA	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	473, 842, 846, 861
BstDEI	CTNAG	3 cut(s)	266, 607, 936
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	3 cut(s)	184, 525, 826
BstKTI	GATC	2 cut(s)	412, 585
BstMAI	GTCTC	2 cut(s)	281, 966
BstMBI	GATC	2 cut(s)	409, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 481
BstSFI	CTRYAG	2 cut(s)	624, 846
BstSNI	TACGTA	1 cut(s)	766
BstV1I	GCAGC	4 cut(s)	13, 214, 380, 836
BstV2I	GAAGAC	1 cut(s)	947
BsuI	GTATCC	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	3 cut(s)	184, 525, 826
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	2 cut(s)	715, 916
Cac8I	GCNNGC	4 cut(s)	473, 842, 846, 861
Cfr13I	GGNCC	2 cut(s)	446, 785
Csp6I	GTAC	3 cut(s)	107, 201, 546
CviAII	CATG	4 cut(s)	218, 292, 617, 650
CviQI	GTAC	3 cut(s)	107, 201, 546
DdeI	CTNAG	3 cut(s)	266, 607, 936
DpnI	GATC	2 cut(s)	411, 584
DpnII	GATC	2 cut(s)	409, 582
Eco105I	TACGTA	1 cut(s)	766
Eco130I	CCWWGG	2 cut(s)	616, 780
Eco47I	GGWCC	2 cut(s)	446, 785
Eco57I	CTGAAG	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	953
EcoT14I	CCWWGG	2 cut(s)	616, 780
ErhI	CCWWGG	2 cut(s)	616, 780
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	4 cut(s)	221, 295, 620, 653
FaqI	GGGAC	2 cut(s)	634, 798
FatI	CATG	4 cut(s)	217, 291, 616, 649
FauI	CCCGC	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	2 cut(s)	323, 915
Fnu4HI	GCNGC	4 cut(s)	27, 228, 369, 825
FokI	GGATG	3 cut(s)	171, 532, 833
Fsp4HI	GCNGC	4 cut(s)	27, 228, 369, 825
FspBI	CTAG	3 cut(s)	725, 903, 945
GluI	GCNGC	4 cut(s)	27, 228, 369, 825
GsuI	CTGGAG	2 cut(s)	726, 947
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	4 cut(s)	221, 295, 620, 653
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	5 cut(s)	85, 324, 446, 916, 950
Hpy188I	TCNGA	3 cut(s)	79, 281, 756
Hpy188III	TCNNGA	5 cut(s)	705, 725, 737, 893, 903
Hpy8I	GTNNAC	5 cut(s)	85, 324, 446, 916, 950
Hpy99I	CGWCG	3 cut(s)	83, 153, 820
HpyAV	CCTTC	2 cut(s)	899, 981
HpyCH4III	ACNGT	3 cut(s)	60, 911, 920
HpyCH4IV	ACGT	4 cut(s)	81, 544, 765, 869
HpyCH4V	TGCA	9 cut(s)	29, 368, 499, 590, 626, 720, 812, 824, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 481
HpyF3I	CTNAG	3 cut(s)	266, 607, 936
HpySE526I	ACGT	4 cut(s)	81, 544, 765, 869
Hsp92II	CATG	4 cut(s)	221, 295, 620, 653
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	409, 582
Lsp1109I	GCAGC	4 cut(s)	13, 214, 380, 836
LweI	GCATC	2 cut(s)	355, 811
MaeI	CTAG	3 cut(s)	725, 903, 945
MaeII	ACGT	4 cut(s)	81, 544, 765, 869
MaeIII	GTNAC	4 cut(s)	10, 155, 221, 592
MalI	GATC	2 cut(s)	411, 584
MboI	GATC	2 cut(s)	409, 582
MboII	GAAGA	2 cut(s)	769, 952
MluCI	AATT	3 cut(s)	32, 478, 768
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	102, 304
MnlI	CCTC	5 cut(s)	120, 392, 479, 701, 704
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	3 cut(s)	180, 285, 540
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	925
MspI	CCGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	35, 481
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	2 cut(s)	409, 582
NlaIII	CATG	4 cut(s)	221, 295, 620, 653
NlaIV	GGNNCC	1 cut(s)	786
NspV	TTCGAA	1 cut(s)	800
PdmI	GAANNNNTTC	1 cut(s)	796
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	4 cut(s)	28, 229, 370, 826
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	2 cut(s)	446, 785
PstI	CTGCAG	2 cut(s)	628, 850
PvuII	CAGCTG	1 cut(s)	925
RsaI	GTAC	3 cut(s)	108, 202, 547
RsaNI	GTAC	3 cut(s)	107, 201, 546
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	180, 285, 540
SatI	GCNGC	4 cut(s)	27, 228, 369, 825
Sau3AI	GATC	2 cut(s)	409, 582
Sau96I	GGNCC	2 cut(s)	446, 785
SchI	GAGTC	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	355, 811
SfcI	CTRYAG	2 cut(s)	624, 846
SfuI	TTCGAA	1 cut(s)	800
SinI	GGWCC	2 cut(s)	446, 785
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SnaBI	TACGTA	1 cut(s)	766
SpeI	ACTAGT	1 cut(s)	944
Sse9I	AATT	3 cut(s)	32, 478, 768
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	3 cut(s)	725, 903, 945
StyI	CCWWGG	2 cut(s)	616, 780
TaaI	ACNGT	3 cut(s)	60, 911, 920
TaiI	ACGT	4 cut(s)	84, 547, 768, 872
TaqI	TCGA	2 cut(s)	261, 800
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	32, 478, 768
Tru1I	TTAA	3 cut(s)	180, 285, 540
Tru9I	TTAA	3 cut(s)	180, 285, 540
TscAI	CASTG	2 cut(s)	722, 916
TseI	GCWGC	4 cut(s)	26, 227, 368, 824
TspDTI	ATGAA	3 cut(s)	6, 645, 733
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	2 cut(s)	722, 916
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	2 cut(s)	446, 785
XapI	RAATTY	1 cut(s)	32
XbaI	TCTAGA	2 cut(s)	724, 902
XmiI	GTMKAC	2 cut(s)	323, 915
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	3 cut(s)	725, 903, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.