Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8340507.1

Orthogroup ID

OG0010688

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 449

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8340507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 305 bp

atgggaggagtgacgtcttcaatcgcagccaagttcgccttcttcccgccgaatccaccgtcgtacagagtcatcgcagacgagtcctgcggaggaagactctacattcctgaggttcctagaagggacgacgtggatatcctcaagctcaggactcgccgtggcaatgaaatcgtcgccgtccacgtcaagcaccccaaggcttctgccactatgctttattcccatggaaatgctgctgatttgggccagatgttcgagctttttgttgaattgagcgctcgccttcgggttaatttaatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1 Hydrolase_4

Protein Analysis

102

Amino Acids

11.24

Weight (kDa)

9.35

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66900 AT5G38220 AT5G38220
malus_domestica	MD09G1255000.v1.1 MD17G1247600.v1.1
prunus_persica	Prupe.3G146300_v2.0.a1
pyrus_communis	pycom17g24890
rosa_chinensis	RchiOBHm_Chr3g0495091
rosa_laevigata	RLG00000022643
rosa_multiflora	Rmu_co8340507.1_g000001 Rmu_sc0000340.1_g000019
rosa_roxburghii	Rroxscaffold_6G00390730
rosa_rugosa	Rorug03G0269900 Rorug03G0269900 Rorug03G0269900
rosa_samantha	Rh3AG319000 Rh3BG354000 Rh3DG353200
rosa_wichuraiana	Rw0G015010 Rw3G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AciI	CCGC	2 cut(s)	47, 90
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	65
AfeI	AGCGCT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	21, 272
AjiI	CACGTC	2 cut(s)	133, 187
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	2 cut(s)	148, 262
AluI	AGCT	2 cut(s)	148, 262
Aor51HI	AGCGCT	1 cut(s)	280
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	26, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	247
AxyI	CCTNAGG	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	9, 103
BbvI	GCAGC	2 cut(s)	38, 223
BceAI	ACGGC	2 cut(s)	144, 164
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BfaI	CTAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	2 cut(s)	27, 237
BlsI	GCNGC	2 cut(s)	28, 238
BmgBI	CACGTC	2 cut(s)	133, 187
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	9, 103
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	160, 198, 226
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	160, 198, 226
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	102, 163
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	38, 223
BshFI	GGCC	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	249
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	2 cut(s)	47, 90
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	103, 162
BspLI	GGNNCC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	160, 198, 226
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	198, 226
Bst4CI	ACNGT	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	111, 149
BstDSI	CCRYGG	2 cut(s)	160, 226
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	38, 223
BstV2I	GAAGAC	2 cut(s)	9, 103
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	2 cut(s)	160, 226
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	2 cut(s)	133, 187
Cac8I	GCNNGC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	5 cut(s)	29, 148, 203, 249, 262
CviKI_1	RGCY	5 cut(s)	29, 148, 203, 249, 262
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	111, 149
Eco130I	CCWWGG	2 cut(s)	198, 226
Eco32I	GATATC	1 cut(s)	139
Eco47III	AGCGCT	1 cut(s)	280
Eco81I	CCTNAGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	198, 226
ErhI	CCWWGG	2 cut(s)	198, 226
FaeI	CATG	1 cut(s)	230
FaiI	YATR	2 cut(s)	215, 228
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	27, 237
Fsp4HI	GCNGC	2 cut(s)	27, 237
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	2 cut(s)	27, 237
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	5 cut(s)	52, 69, 83, 99, 154
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	110, 151
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	3 cut(s)	64, 134, 179
HpyAV	CCTTC	3 cut(s)	49, 117, 296
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	3 cut(s)	14, 132, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	111, 149
HpySE526I	ACGT	3 cut(s)	14, 132, 186
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	279
LpnPI	CCDG	4 cut(s)	100, 123, 136, 263
Lsp1109I	GCAGC	2 cut(s)	38, 223
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	3 cut(s)	14, 132, 186
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	9, 34, 108
MluCI	AATT	2 cut(s)	272, 295
MlyI	GAGTC	4 cut(s)	78, 92, 93, 148
MnlI	CCTC	3 cut(s)	86, 106, 152
MseI	TTAA	2 cut(s)	294, 299
MslI	CAYNNNNRTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	226
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	28, 238
PleI	GAGTC	4 cut(s)	77, 91, 93, 148
PpsI	GAGTC	4 cut(s)	77, 91, 93, 148
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	294, 299
SatI	GCNGC	2 cut(s)	27, 237
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	4 cut(s)	78, 92, 93, 148
SetI	ASST	6 cut(s)	17, 117, 135, 150, 189, 264
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	272, 295
SsiI	CCGC	2 cut(s)	47, 90
SspMI	CTAG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	198, 226
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	3 cut(s)	17, 135, 189
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	272, 295
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	294, 299
Tru9I	TTAA	2 cut(s)	294, 299
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	26, 236
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	183
XspI	CTAG	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.