Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010973

Physical Location & Seq

Genomic Coordinates Forward (+)

25235271 .. 25236878

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGTTTCATAATGGAATTCGCGGAGAATTTGGTGTTAAGGTTAATGGAGAATCCAGAGGAACGAGACAGGAAAGCGAGGGAACACATATATGAGATGCATGAGAGGTGCAAGAAGATTAAGGAGATGTGGGCATTGCCTATTCGTCCTTATGGATTCTGGACATTTGAGCGTCACAATGCTCAGCTTCGTTGGGATCCTCAGATCAGTCAGGTTGCTGGTCGAAGGGATCCTTATGATGATCTTCTCGAGGACAACTACACTCCTCCTTCTTCCTCTTCCTCATCTTCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUFB11

Protein Analysis

98

Amino Acids

11.79

Weight (kDa)

5.37

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUFB11	PF17250	1 - 85	1.5e-52	NADH-ubiquinone oxidoreductase 11 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67350 AT1G67350
fragaria_vesca	FvH4_4g23770 FvH4_4g23770 FvH4_4g23770 FvH4_4g23770
malus_domestica	MD13G1118900.v1.1 MD16G1119100.v1.1
prunus_persica	Prupe.1G225900_v2.0.a1 Prupe.1G225900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430261
rosa_multiflora	Rmu_sc0027338.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372060
rosa_rugosa	Rorug04G0241900 Rorug04G0242000 Rorug04G0242100
rosa_samantha	Rh4BG305200 Rh4CG320700 Rh4DG302500
rosa_wichuraiana	Rw4G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	4 cut(s)	191, 204, 224, 237
AcsI	RAATTY	2 cut(s)	17, 28
AcuI	CTGAAG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	4 cut(s)	191, 204, 224, 237
Ama87I	CYCGRG	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	17, 28
AvaI	CYCGRG	1 cut(s)	248
BamHI	GGATCC	2 cut(s)	196, 229
BcoDI	GTCTC	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	198, 231
BmsI	GCATC	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	197, 215
BseRI	GAGGAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	196, 204, 229, 241
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	196, 214
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	198, 231
BspPI	GGATC	4 cut(s)	191, 204, 224, 237
BsrDI	GCAATG	1 cut(s)	134
BssMI	GATC	4 cut(s)	196, 204, 229, 241
Bst6I	CTCTTC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	183, 201
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	4 cut(s)	199, 207, 232, 244
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	196, 204, 229, 241
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	2 cut(s)	196, 229
BstYI	RGATCY	2 cut(s)	196, 229
CseI	GACGC	1 cut(s)	161
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	1 cut(s)	187
CviKI_1	RGCY	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	183, 201
DpnI	GATC	4 cut(s)	198, 206, 231, 243
DpnII	GATC	4 cut(s)	196, 204, 229, 241
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	102
FaeI	CATG	1 cut(s)	104
FaiI	YATR	7 cut(s)	11, 89, 91, 93, 102, 153, 237
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FatI	CATG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	2 cut(s)	52, 156
Hpy188I	TCNGA	2 cut(s)	204, 292
Hpy188III	TCNNGA	3 cut(s)	56, 160, 248
HpyAV	CCTTC	2 cut(s)	219, 279
HpyCH4V	TGCA	2 cut(s)	100, 111
HpyF3I	CTNAG	2 cut(s)	183, 201
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	196, 204, 229, 241
LpnPI	CCDG	5 cut(s)	55, 69, 145, 197, 204
LweI	GCATC	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	4 cut(s)	198, 206, 231, 243
MboI	GATC	4 cut(s)	196, 204, 229, 241
MboII	GAAGA	5 cut(s)	127, 236, 264, 270, 279
MflI	RGATCY	2 cut(s)	196, 229
MluCI	AATT	2 cut(s)	17, 28
MnlI	CCTC	8 cut(s)	52, 72, 99, 210, 244, 276, 286, 292
Mph1103I	ATGCAT	1 cut(s)	102
MseI	TTAA	3 cut(s)	38, 44, 120
MslI	CAYNNNNRTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	23
NdeII	GATC	4 cut(s)	196, 204, 229, 241
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	198, 231
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	52, 156
PspN4I	GGNNCC	2 cut(s)	198, 231
PsuI	RGATCY	2 cut(s)	196, 229
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	38, 44, 120
Sau3AI	GATC	4 cut(s)	196, 204, 229, 241
SetI	ASST	4 cut(s)	44, 110, 189, 216
SfaNI	GCATC	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	17, 28
SsiI	CCGC	1 cut(s)	23
TaqI	TCGA	2 cut(s)	223, 249
TasI	AATT	2 cut(s)	17, 28
TfiI	GAWTC	2 cut(s)	52, 156
Tru1I	TTAA	3 cut(s)	38, 44, 120
Tru9I	TTAA	3 cut(s)	38, 44, 120
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
XapI	RAATTY	2 cut(s)	17, 28
XhoI	CTCGAG	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.