Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010973

Physical Location & Seq

Genomic Coordinates Reverse (-)

8686705 .. 8688165

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1118900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAGGATCCTAAAGAGAGGGATAGGAAGTTCAGGGAGCACGTGTATGCGGTGAGAGACCGGTGCCAAAAGACCAAGGAGATGTGGGCGTTACCTCTCCGTCCCTACGGATTTTGGACCTTTGAGCGCCACAATTCGCAGCTCCGTTGGGATGCCCAGATTAGCCAGGTTGCAGGCCGGAGGGACCCCTATGATGATCTCCTCCAACACAGCTATGATCCCGTCAAGCCGTCTGCAGAATTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUFB11

Protein Analysis

83

Amino Acids

10.05

Weight (kDa)

8.82

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUFB11	PF17250	1 - 70	5e-42	NADH-ubiquinone oxidoreductase 11 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67350 AT1G67350
fragaria_vesca	FvH4_4g23770 FvH4_4g23770 FvH4_4g23770 FvH4_4g23770
malus_domestica	MD13G1118900.v1.1 MD16G1119100.v1.1
prunus_persica	Prupe.1G225900_v2.0.a1 Prupe.1G225900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430261
rosa_multiflora	Rmu_sc0027338.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372060
rosa_rugosa	Rorug04G0241900 Rorug04G0242000 Rorug04G0242100
rosa_samantha	Rh4BG305200 Rh4CG320700 Rh4DG302500
rosa_wichuraiana	Rw4G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	3 cut(s)	2, 15, 212
AcsI	RAATTY	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	42
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	165
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AluBI	AGCT	2 cut(s)	142, 213
AluI	AGCT	2 cut(s)	142, 213
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	2, 15, 212
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	117, 184
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	117, 184
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	63
BbrPI	CACGTG	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	117, 184
BmgT120I	GGNCC	2 cut(s)	117, 184
BmiI	GGNNCC	4 cut(s)	9, 65, 185, 186
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse118I	RCCGGY	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	63
BshTI	ACCGGT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	61, 178
BslFI	GGGAC	2 cut(s)	87, 197
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	87, 197
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	7, 196, 217
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	9, 65, 185, 186
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	3 cut(s)	2, 15, 212
BspT107I	GGYRCC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	7, 196, 217
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	10, 199, 220
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	7, 196, 217
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	117, 184
CspAI	ACCGGT	1 cut(s)	60
CviJI	RGCY	5 cut(s)	142, 165, 177, 213, 229
CviKI_1	RGCY	5 cut(s)	142, 165, 177, 213, 229
DpnI	GATC	3 cut(s)	9, 198, 219
DpnII	GATC	3 cut(s)	7, 196, 217
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	117, 184
Eco72I	CACGTG	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	3 cut(s)	48, 192, 216
FaqI	GGGAC	2 cut(s)	87, 197
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	140
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	61, 178
HhaI	GCGC	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	61, 178
HphI	GGTGA	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	173, 236
HpySE526I	ACGT	1 cut(s)	42
HspAI	GCGC	1 cut(s)	127
KflI	GGGWCCC	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	7, 196, 217
LmnI	GCTCC	2 cut(s)	37, 147
LpnPI	CCDG	7 cut(s)	19, 74, 152, 159, 170, 179, 191
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	3 cut(s)	9, 198, 219
MboI	GATC	3 cut(s)	7, 196, 217
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	2 cut(s)	133, 239
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	4 cut(s)	12, 105, 174, 212
MslI	CAYNNNNRTG	2 cut(s)	45, 213
MspI	CCGG	2 cut(s)	61, 178
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
NdeII	GATC	3 cut(s)	7, 196, 217
NlaIV	GGNNCC	4 cut(s)	9, 65, 185, 186
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	4 cut(s)	9, 65, 185, 186
PspPI	GGNCC	2 cut(s)	117, 184
PspPPI	RGGWCCY	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	45, 213
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	3 cut(s)	7, 196, 217
Sau96I	GGNCC	2 cut(s)	117, 184
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	45, 97, 122, 144, 171, 215
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	117, 184
SmiMI	CAYNNNNRTG	2 cut(s)	45, 213
Sse9I	AATT	2 cut(s)	133, 239
SsiI	CCGC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	45
TasI	AATT	2 cut(s)	133, 239
TseI	GCWGC	1 cut(s)	139
TspGWI	ACGGA	3 cut(s)	89, 123, 134
VpaK11BI	GGWCC	2 cut(s)	117, 184
XapI	RAATTY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.