Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010973

Physical Location & Seq

Genomic Coordinates Reverse (-)

8512805 .. 8514539

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1119100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGTTTGCTGAGAATTTGGTATTGAGGCTAATGGAGGACCCTAAGGAGAGGGATAGGAAGTTCAGGGAGCACGTGTATGCGGTGAAGGACCGGTGCCAAAAGACCAAGGACATGTGGGCGCTACCCCTCCGTCCCTACGGATTTTGGACCTTTGAGCGCCATAATTCGCAGCTCCGTTGGGATGCTCAGATTAGCCAGGTTGAGGGCCGGAGGGATCCTTATGATGATCTCCTCGAACACAGCAATGATCTCGTCACCCCCAAAACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUFB11

Protein Analysis

92

Amino Acids

11.12

Weight (kDa)

6.83

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUFB11	PF17250	1 - 81	1.4e-48	NADH-ubiquinone oxidoreductase 11 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67350 AT1G67350
fragaria_vesca	FvH4_4g23770 FvH4_4g23770 FvH4_4g23770 FvH4_4g23770
malus_domestica	MD13G1118900.v1.1 MD16G1119100.v1.1
prunus_persica	Prupe.1G225900_v2.0.a1 Prupe.1G225900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430261
rosa_multiflora	Rmu_sc0027338.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372060
rosa_rugosa	Rorug04G0241900 Rorug04G0242000 Rorug04G0242100
rosa_samantha	Rh4BG305200 Rh4CG320700 Rh4DG302500
rosa_wichuraiana	Rw4G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	212, 225
AcsI	RAATTY	1 cut(s)	16
AcvI	CACGTG	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflIII	ACRYGT	2 cut(s)	75, 114
AgeI	ACCGGT	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	198
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	212, 225
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	16
AsiGI	ACCGGT	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	124, 162
AspS9I	GGNCC	4 cut(s)	40, 91, 150, 208
AsuHPI	GGTGA	2 cut(s)	97, 250
AvaII	GGWCC	3 cut(s)	40, 91, 150
AxyI	CCTNAGG	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	96
BbrPI	CACGTG	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	125, 163
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	3 cut(s)	40, 91, 150
BmgT120I	GGNCC	4 cut(s)	40, 91, 150, 208
BmiI	GGNNCC	3 cut(s)	42, 98, 219
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	93
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	96
BshTI	ACCGGT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	94, 211
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	217, 229, 250
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	4, 202
BspLI	GGNNCC	3 cut(s)	42, 98, 219
BspPI	GGATC	2 cut(s)	212, 225
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	217, 229, 250
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	12, 45, 189
BstF5I	GGATG	1 cut(s)	190
BstH2I	RGCGCY	2 cut(s)	125, 163
BstHHI	GCGC	2 cut(s)	124, 162
BstKTI	GATC	3 cut(s)	220, 232, 253
BstMBI	GATC	3 cut(s)	217, 229, 250
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	190
CfoI	GCGC	2 cut(s)	124, 162
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	40, 91, 150, 208
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	31, 175, 198, 210
CviKI_1	RGCY	4 cut(s)	31, 175, 198, 210
DdeI	CTNAG	3 cut(s)	12, 45, 189
DpnI	GATC	3 cut(s)	219, 231, 252
DpnII	GATC	3 cut(s)	217, 229, 250
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	3 cut(s)	40, 91, 150
Eco72I	CACGTG	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	81, 116, 165, 225
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	173
GlaI	GCGC	2 cut(s)	123, 161
GluI	GCNGC	1 cut(s)	173
HaeII	RGCGCY	2 cut(s)	125, 163
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	94, 211
HhaI	GCGC	2 cut(s)	124, 162
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	2 cut(s)	122, 160
HinP1I	GCGC	2 cut(s)	122, 160
HpaII	CCGG	2 cut(s)	94, 211
HphI	GGTGA	2 cut(s)	97, 250
Hpy188I	TCNGA	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	75
HpyF3I	CTNAG	3 cut(s)	12, 45, 189
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	2 cut(s)	122, 160
Kzo9I	GATC	3 cut(s)	217, 229, 250
LmnI	GCTCC	2 cut(s)	70, 180
LpnPI	CCDG	5 cut(s)	52, 107, 185, 212, 224
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	175
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	219, 231, 252
MboI	GATC	3 cut(s)	217, 229, 250
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	16, 166
MnlI	CCTC	7 cut(s)	21, 31, 45, 140, 199, 207, 245
MslI	CAYNNNNRTG	2 cut(s)	78, 246
MspI	CCGG	2 cut(s)	94, 211
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	217, 229, 250
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	3 cut(s)	42, 98, 219
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	174
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	198
PspCI	CACGTG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	3 cut(s)	42, 98, 219
PspPI	GGNCC	4 cut(s)	40, 91, 150, 208
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	78, 246
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	217, 229, 250
Sau96I	GGNCC	4 cut(s)	40, 91, 150, 208
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	4 cut(s)	78, 155, 177, 204
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	3 cut(s)	40, 91, 150
SmiMI	CAYNNNNRTG	2 cut(s)	78, 246
Sse9I	AATT	2 cut(s)	16, 166
SsiI	CCGC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	16, 166
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	256
TspGWI	ACGGA	3 cut(s)	122, 156, 167
VpaK11BI	GGWCC	3 cut(s)	40, 91, 150
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.