FvH4_4g23770

NADH-ubiquinone oxidoreductase 11 kDa subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010973
Physical Location & Seq
Forward (+)
26157094 .. 26159646
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23770.t3

Sequence Viewer

Length: 288 bp
ATGGGGTTTATAATGGAGTTTGCTGAGAATCTGGTACTGAAGCTAATGGAGGACCCTAAGGAGCGAGATAGGAAATTCAGGGAGCATGTGTATGCGACCAAGGATCGATGTGAGAAGACAAAGGAGATGTGGGCCTTACCTCTCCGGCCATATGGGTTCTGGACCTTTGACCGCCACAATTCGCAGATGAAATGGGACTCCCAGATTAGTCAGGTTGAGGGCAGGAGGGACCCCTATGATGACCTTCTCCTGCACAGCCGCGACACTGACATCGGCGTATCGAAATGA

Protein Analysis

96

Amino Acids

11.51

Weight (kDa)

6.29

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDUFB11 PF17250 1 - 84 2.8e-51 NADH-ubiquinone oxidoreductase 11 kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 172, 259
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 36
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AlwI GGATC 1 cut(s) 111
AoxI GGCC 2 cut(s) 132, 146
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 4 cut(s) 52, 132, 162, 229
AvaII GGWCC 3 cut(s) 52, 162, 229
AxyI CCTNAGG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 122
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 3 cut(s) 52, 162, 229
BmgT120I GGNCC 4 cut(s) 52, 132, 162, 229
BmiI GGNNCC 3 cut(s) 54, 230, 231
BpiI GAAGAC 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse21I CCTNAGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 134, 148
BshVI ATCGAT 1 cut(s) 106
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 209, 242
BsmFI GGGAC 2 cut(s) 209, 242
BsnI GGCC 2 cut(s) 134, 148
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 172, 259
BspANI GGCC 2 cut(s) 134, 148
BspCNI CTCAG 1 cut(s) 16
BspDI ATCGAT 1 cut(s) 106
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 54, 230, 231
BspPI GGATC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 24, 57
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 89
BstUI CGCG 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 122
Bsu15I ATCGAT 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 134, 148
BsuTUI ATCGAT 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 264
Cfr13I GGNCC 4 cut(s) 52, 132, 162, 229
ClaI ATCGAT 1 cut(s) 106
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 43, 134, 148, 258
CviKI_1 RGCY 4 cut(s) 43, 134, 148, 258
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 2 cut(s) 24, 57
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 52, 162, 229
Eco57I CTGAAG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 57
EcoO109I RGGNCCY 2 cut(s) 52, 229
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 11, 87, 93, 151, 153, 237
FaqI GGGAC 2 cut(s) 209, 242
FatI CATG 1 cut(s) 85
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 259
GluI GCNGC 1 cut(s) 259
HaeIII GGCC 2 cut(s) 134, 148
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 89
HinfI GANTC 2 cut(s) 28, 197
HpaII CCGG 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 24, 57
Hsp92II CATG 1 cut(s) 89
KflI GGGWCCC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 61, 82
LpnPI CCDG 8 cut(s) 17, 64, 145, 158, 197, 208, 215, 263
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 127
MluCI AATT 2 cut(s) 74, 178
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 4 cut(s) 43, 150, 211, 219
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 261
NdeI CATATG 1 cut(s) 151
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 3 cut(s) 54, 230, 231
NspI RCATGY 1 cut(s) 89
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PpuMI RGGWCCY 2 cut(s) 52, 229
PsiI TTATAA 1 cut(s) 11
Psp5II RGGWCCY 2 cut(s) 52, 229
PspN4I GGNNCC 3 cut(s) 54, 230, 231
PspPI GGNCC 4 cut(s) 52, 132, 162, 229
PspPPI RGGWCCY 2 cut(s) 52, 229
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 4 cut(s) 52, 132, 162, 229
SchI GAGTC 1 cut(s) 191
SetI ASST 5 cut(s) 45, 142, 167, 216, 246
SinI GGWCC 3 cut(s) 52, 162, 229
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 2 cut(s) 74, 178
SsiI CCGC 2 cut(s) 172, 259
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 2 cut(s) 106, 281
TasI AATT 2 cut(s) 74, 178
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 3 cut(s) 52, 162, 229
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.