Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010973

Physical Location & Seq

Genomic Coordinates Forward (+)

53538074 .. 53539922

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGTTTATAATGGAGTTTGCTGAGAATCTGGTGCTGAGGCTAATGGAGGACCCTAAGGAGCGAGATAGGAAATTTAGGGAGCACTTGTATGCGGTGAAGGACCGATGTGAGAAGACAAAAGAGATGTGGGCCTTACCTCTCCGGCCTTATGGGTTTTGGACATTTGACCGCCACAATTCGCAGATGAAATGGGACGCCCAGATTAGTCAGGTTGAAGGCAGGAGGGACCCCTATGATGACCTTCTCCAGCACAGCCGTGACACTGACATCGGCAAATCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUFB11

Protein Analysis

95

Amino Acids

11.58

Weight (kDa)

6.83

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUFB11	PF17250	1 - 85	5.7e-52	NADH-ubiquinone oxidoreductase 11 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67350 AT1G67350
fragaria_vesca	FvH4_4g23770 FvH4_4g23770 FvH4_4g23770 FvH4_4g23770
malus_domestica	MD13G1118900.v1.1 MD16G1119100.v1.1
prunus_persica	Prupe.1G225900_v2.0.a1 Prupe.1G225900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430261
rosa_multiflora	Rmu_sc0027338.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372060
rosa_rugosa	Rorug04G0241900 Rorug04G0242000 Rorug04G0242100
rosa_samantha	Rh4BG305200 Rh4CG320700 Rh4DG302500
rosa_wichuraiana	Rw4G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AciI	CCGC	2 cut(s)	95, 172
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	218
AleI	CACNNNNGTG	1 cut(s)	258
Alw21I	GWGCWC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	132, 146
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	52, 103, 132, 229
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	3 cut(s)	52, 103, 229
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	243
Bme18I	GGWCC	3 cut(s)	52, 103, 229
BmgT120I	GGNCC	4 cut(s)	52, 103, 132, 229
BmiI	GGNNCC	3 cut(s)	54, 230, 231
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse21I	CCTNAGG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	15, 29
BshFI	GGCC	2 cut(s)	134, 148
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	2 cut(s)	209, 242
BsmFI	GGGAC	2 cut(s)	209, 242
BsnI	GGCC	2 cut(s)	134, 148
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	95, 172
BspANI	GGCC	2 cut(s)	134, 148
BspCNI	CTCAG	2 cut(s)	16, 30
BspLI	GGNNCC	3 cut(s)	54, 230, 231
BssNI	GRCGYC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	24, 38, 57
BstV2I	GAAGAC	1 cut(s)	122
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	134, 148
BtsIMutI	CAGTG	1 cut(s)	264
Cfr13I	GGNCC	4 cut(s)	52, 103, 132, 229
CseI	GACGC	1 cut(s)	206
CviJI	RGCY	4 cut(s)	43, 134, 148, 258
CviKI_1	RGCY	4 cut(s)	43, 134, 148, 258
DdeI	CTNAG	3 cut(s)	24, 38, 57
Eco47I	GGWCC	3 cut(s)	52, 103, 229
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	52, 229
FaiI	YATR	4 cut(s)	11, 93, 153, 237
FaqI	GGGAC	2 cut(s)	209, 242
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	134, 148
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	94, 212, 254
HpyF3I	CTNAG	3 cut(s)	24, 38, 57
Hsp92I	GRCGYC	1 cut(s)	198
KflI	GGGWCCC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	61, 82
LpnPI	CCDG	6 cut(s)	17, 158, 197, 208, 215, 263
MaeIII	GTNAC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	74, 178
MnlI	CCTC	4 cut(s)	33, 43, 150, 219
MslI	CAYNNNNRTG	2 cut(s)	90, 258
MspI	CCGG	1 cut(s)	145
NlaIV	GGNNCC	3 cut(s)	54, 230, 231
NmuCI	GTSAC	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	28
PpuMI	RGGWCCY	2 cut(s)	52, 229
PsiI	TTATAA	1 cut(s)	11
Psp5II	RGGWCCY	2 cut(s)	52, 229
PspN4I	GGNNCC	3 cut(s)	54, 230, 231
PspPI	GGNCC	4 cut(s)	52, 103, 132, 229
PspPPI	RGGWCCY	2 cut(s)	52, 229
RseI	CAYNNNNRTG	2 cut(s)	90, 258
Sau96I	GGNCC	4 cut(s)	52, 103, 132, 229
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	3 cut(s)	142, 216, 246
SgeI	CNNG	9 cut(s)	44, 77, 100, 157, 214, 224, 235, 262, 272
SinI	GGWCC	3 cut(s)	52, 103, 229
SmiMI	CAYNNNNRTG	2 cut(s)	90, 258
Sse9I	AATT	2 cut(s)	74, 178
SsiI	CCGC	2 cut(s)	95, 172
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	74, 178
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	52, 103, 229
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.