Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010973

Physical Location & Seq

Genomic Coordinates Forward (+)

23929637 .. 23931337

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G225900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGTTTGTAATGGAGTTTGCTGAGAATCTGATACTGAAGCTAATGGAGGACCCTAAGGAGAGGGATAGGAAATTCAGAGAGCATGTGTATGCGGTGAAGGACCAGTGCAACAAGACCAAGGAGATGTGGGCCCTACCTCTCCGTCCCTATGGCTTTTGGACCTTCGAGCGCCACAATTCGCAGCTTCGTTGGGATGCCCAAATTAGCCAGGTTGCCGGCCGGAGGGACCCCTACGATGATCTCCTCCAACACAGCACTGACCCTGTCACCTCCAGAACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUFB11

Protein Analysis

96

Amino Acids

11.44

Weight (kDa)

7.9

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67350 AT1G67350
fragaria_vesca	FvH4_4g23770 FvH4_4g23770 FvH4_4g23770 FvH4_4g23770
malus_domestica	MD13G1118900.v1.1 MD16G1119100.v1.1
prunus_persica	Prupe.1G225900_v2.0.a1 Prupe.1G225900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430261
rosa_multiflora	Rmu_sc0027338.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372060
rosa_rugosa	Rorug04G0241900 Rorug04G0242000 Rorug04G0242100
rosa_samantha	Rh4BG305200 Rh4CG320700 Rh4DG302500
rosa_wichuraiana	Rw4G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	43, 187
AluI	AGCT	2 cut(s)	43, 187
AoxI	GGCC	2 cut(s)	132, 220
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	6 cut(s)	52, 103, 132, 133, 162, 229
AsuHPI	GGTGA	2 cut(s)	109, 262
AvaII	GGWCC	4 cut(s)	52, 103, 162, 229
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	175
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	4 cut(s)	52, 103, 162, 229
BmgT120I	GGNCC	6 cut(s)	52, 103, 132, 133, 162, 229
BmiI	GGNNCC	4 cut(s)	54, 134, 230, 231
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	134, 222
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	219, 223
BslFI	GGGAC	2 cut(s)	132, 242
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	132, 242
BsnI	GGCC	2 cut(s)	134, 222
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	134, 222
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	4 cut(s)	54, 134, 230, 231
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	24, 57
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMCI	CGRYCG	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	196
BstZI	CGGCCG	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	134, 222
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	113, 258
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	6 cut(s)	52, 103, 132, 133, 162, 229
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	6 cut(s)	43, 134, 156, 187, 210, 222
CviKI_1	RGCY	6 cut(s)	43, 134, 156, 187, 210, 222
DdeI	CTNAG	2 cut(s)	24, 57
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	4 cut(s)	52, 103, 162, 229
Eco52I	CGGCCG	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	3 cut(s)	52, 133, 229
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	87, 93, 153
FaqI	GGGAC	2 cut(s)	132, 242
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	185
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	134, 222
HapII	CCGG	2 cut(s)	219, 223
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	2 cut(s)	219, 223
HphI	GGTGA	2 cut(s)	109, 262
Hpy188I	TCNGA	2 cut(s)	33, 80
Hpy188III	TCNNGA	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	94, 175
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	24, 57
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	172
KflI	GGGWCCC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	119, 197, 224, 232, 236, 279
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	3 cut(s)	74, 178, 204
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	43, 57, 150, 219, 257, 283
MroNI	GCCGGC	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	2 cut(s)	219, 223
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	241
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	4 cut(s)	54, 134, 230, 231
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	186
PpuMI	RGGWCCY	2 cut(s)	52, 229
Psp5II	RGGWCCY	2 cut(s)	52, 229
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	4 cut(s)	54, 134, 230, 231
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	6 cut(s)	52, 103, 132, 133, 162, 229
PspPPI	RGGWCCY	2 cut(s)	52, 229
PsyI	GACNNNGTC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	6 cut(s)	52, 103, 132, 133, 162, 229
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	6 cut(s)	45, 142, 167, 189, 216, 275
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	4 cut(s)	52, 103, 162, 229
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	74, 178, 204
SsiI	CCGC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	120
TaqI	TCGA	1 cut(s)	168
TasI	AATT	3 cut(s)	74, 178, 204
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	2 cut(s)	113, 265
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	113, 265
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	4 cut(s)	52, 103, 162, 229
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.