Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027338.1

Orthogroup ID

OG0010973

Physical Location & Seq

Genomic Coordinates Forward (+)

661 .. 948

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027338.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggggtttataatggagtttgctgagaatctggtgctgaggctaatggaggaccctaaggagcgagataggaaatttagggagcacgtgtatgcggtgaaggatcgatgtgagaagacaaaagagatgtgggccttacctctccggccttatgggttttggacatttgaccgccacaattcgcagatgaaatgggacgcccagattagtcaggttgaaggcaggagggacccctatgatgaccttctccagcacagccgcgacactgacattggcaaatctaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUFB11

Protein Analysis

95

Amino Acids

11.57

Weight (kDa)

6.83

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67350 AT1G67350
fragaria_vesca	FvH4_4g23770 FvH4_4g23770 FvH4_4g23770 FvH4_4g23770
malus_domestica	MD13G1118900.v1.1 MD16G1119100.v1.1
prunus_persica	Prupe.1G225900_v2.0.a1 Prupe.1G225900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430261
rosa_multiflora	Rmu_sc0027338.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372060
rosa_rugosa	Rorug04G0241900 Rorug04G0242000 Rorug04G0242100
rosa_samantha	Rh4BG305200 Rh4CG320700 Rh4DG302500
rosa_wichuraiana	Rw4G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccII	CGCG	1 cut(s)	261
AciI	CCGC	3 cut(s)	95, 172, 259
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	74
AcvI	CACGTG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	2 cut(s)	132, 146
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	52, 132, 229
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	52, 229
AxyI	CCTNAGG	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	52, 229
BmgT120I	GGNCC	3 cut(s)	52, 132, 229
BmiI	GGNNCC	3 cut(s)	54, 230, 231
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse21I	CCTNAGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	15, 29
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	134, 148
BshVI	ATCGAT	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	2 cut(s)	209, 242
BsmFI	GGGAC	2 cut(s)	209, 242
BsnI	GGCC	2 cut(s)	134, 148
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	95, 172, 259
BspANI	GGCC	2 cut(s)	134, 148
BspCNI	CTCAG	2 cut(s)	16, 30
BspDI	ATCGAT	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	54, 230, 231
BspPI	GGATC	1 cut(s)	111
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	24, 38, 57
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	134, 148
BsuTUI	ATCGAT	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	264
Cfr13I	GGNCC	3 cut(s)	52, 132, 229
ClaI	ATCGAT	1 cut(s)	106
CseI	GACGC	1 cut(s)	206
CviJI	RGCY	4 cut(s)	43, 134, 148, 258
CviKI_1	RGCY	4 cut(s)	43, 134, 148, 258
DdeI	CTNAG	3 cut(s)	24, 38, 57
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	52, 229
Eco72I	CACGTG	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	52, 229
FaiI	YATR	4 cut(s)	11, 93, 153, 237
FaqI	GGGAC	2 cut(s)	209, 242
Fnu4HI	GCNGC	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	134, 148
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	94, 212, 254
HpyCH4IV	ACGT	1 cut(s)	87
HpyF3I	CTNAG	3 cut(s)	24, 38, 57
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	198
KflI	GGGWCCC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	61, 82
LpnPI	CCDG	6 cut(s)	17, 158, 197, 208, 215, 263
MaeII	ACGT	1 cut(s)	87
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	74, 178
MnlI	CCTC	4 cut(s)	33, 43, 150, 219
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	261
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	54, 230, 231
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	260
PmaCI	CACGTG	1 cut(s)	88
PmlI	CACGTG	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	88
PpuMI	RGGWCCY	2 cut(s)	52, 229
PsiI	TTATAA	1 cut(s)	11
Psp5II	RGGWCCY	2 cut(s)	52, 229
PspCI	CACGTG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	54, 230, 231
PspPI	GGNCC	3 cut(s)	52, 132, 229
PspPPI	RGGWCCY	2 cut(s)	52, 229
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	3 cut(s)	52, 132, 229
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	4 cut(s)	90, 142, 216, 246
SinI	GGWCC	2 cut(s)	52, 229
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	74, 178
SsiI	CCGC	3 cut(s)	95, 172, 259
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	106
TasI	AATT	2 cut(s)	74, 178
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	2 cut(s)	52, 229
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.