AT1G68230

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016650
Physical Location & Seq
Forward (+)
25572119 .. 25573447
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68230.1

Sequence Viewer

Length: 489 bp
ATGGCGGTTTTTGGATATGAAATGGATGAACATAGAGCTTCTTCATCGAGACGACGAAGATCTTTGTACCACAATCTAGGAGGAGGACGATTTGCTGATATAATGTTCTGGAAGAACAAGAAAGAATCAGGAACAATCTTGGGGGTATTCACATTGATATGGTTCTTGTTCGAAGTGGTTGAATATCCTTTCATCACTTTCCTCTGCCAGATCCTCTTACTATTCATTTTCATATTCCTCATTTGGTCTTACATTGGCTCCTCACAACTAATCCAGAGTAAACCTCCGAGTATTAATGATCTAAGGATTTCGGAATCGAATTGGAGATTCTTGTTCAACAAGATAAACTGGTTCATCATCAAATTGTATGATATTTCAAGTGGCAAAGACTTCAGACTCCTTTTTCTGGCCGTTGTTTCCCTATGGATATTATCAGTGGTTGGAAACTATTTCAGCTCTCTAACTCTATTATACATCGGTGAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

162

Amino Acids

19.04

Weight (kDa)

9.3

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 31 - 160 6.4e-32 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016650)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68230 AT1G68230
fragaria_vesca FvH4_4g26750
malus_domestica MD16G1037300.v1.1
prunus_persica Prupe.1G316500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434431
rosa_laevigata RLG00000006672
rosa_multiflora Rmu_co8483911.1_g000001
rosa_roxburghii Rroxscaffold_5G00375790
rosa_samantha Rh4AG332100 Rh4BG340000 Rh4CG355200 Rh4DG335300
rosa_wichuraiana Rw4G028800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 376
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 3 cut(s) 182, 337, 378
AluBI AGCT 2 cut(s) 38, 456
AluI AGCT 2 cut(s) 38, 456
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 205
AoxI GGCC 1 cut(s) 408
AseI ATTAAT 1 cut(s) 294
AsuII TTCGAA 1 cut(s) 171
BceAI ACGGC 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 1 cut(s) 77
BglII AGATCT 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 259
BplI GAGNNNNNCTC 2 cut(s) 268, 300
Bpu14I TTCGAA 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 406
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 96, 250
BshFI GGCC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 43
BsmBI CGTCTC 1 cut(s) 43
BsnI GGCC 1 cut(s) 410
Bsp119I TTCGAA 1 cut(s) 171
Bsp143I GATC 3 cut(s) 59, 210, 298
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 410
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 171
BsrI ACTGG 1 cut(s) 353
BssMI GATC 3 cut(s) 59, 210, 298
BstBI TTCGAA 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 3 cut(s) 62, 213, 301
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 59, 210, 298
BstX2I RGATCY 2 cut(s) 59, 210
BstYI RGATCY 2 cut(s) 59, 210
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 441
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 4 cut(s) 38, 258, 410, 456
CviKI_1 RGCY 4 cut(s) 38, 258, 410, 456
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 302
DpnI GATC 3 cut(s) 61, 212, 300
DpnII GATC 3 cut(s) 59, 210, 298
EaeI YGGCCR 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 43
FaiI YATR 8 cut(s) 18, 33, 101, 160, 233, 369, 424, 472
FokI GGATG 1 cut(s) 38
FspBI CTAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 410
HinfI GANTC 5 cut(s) 125, 314, 327, 396, 482
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 3 cut(s) 288, 313, 395
Hpy188III TCNNGA 4 cut(s) 48, 109, 129, 274
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 302
Kzo9I GATC 3 cut(s) 59, 210, 298
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 6 cut(s) 94, 114, 221, 287, 334, 392
MaeI CTAG 1 cut(s) 77
MalI GATC 3 cut(s) 61, 212, 300
MboI GATC 3 cut(s) 59, 210, 298
MboII GAAGA 3 cut(s) 33, 69, 124
MflI RGATCY 2 cut(s) 59, 210
MluCI AATT 2 cut(s) 319, 362
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 7 cut(s) 74, 77, 212, 224, 248, 271, 294
MseI TTAA 2 cut(s) 294, 487
MslI CAYNNNNRTG 1 cut(s) 157
NdeII GATC 3 cut(s) 59, 210, 298
NlaIV GGNNCC 1 cut(s) 259
NspV TTCGAA 1 cut(s) 171
PfeI GAWTC 3 cut(s) 125, 314, 327
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
PshBI ATTAAT 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 2 cut(s) 59, 210
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 157
SaqAI TTAA 2 cut(s) 294, 487
Sau3AI GATC 3 cut(s) 59, 210, 298
SchI GAGTC 1 cut(s) 390
SetI ASST 3 cut(s) 40, 286, 458
SfuI TTCGAA 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 2 cut(s) 319, 362
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 77
TaqI TCGA 3 cut(s) 47, 171, 317
TasI AATT 2 cut(s) 319, 362
TfiI GAWTC 3 cut(s) 125, 314, 327
Tru1I TTAA 2 cut(s) 294, 487
Tru9I TTAA 2 cut(s) 294, 487
TscAI CASTG 1 cut(s) 441
TspDTI ATGAA 7 cut(s) 33, 33, 42, 181, 214, 220, 343
TspRI CASTG 1 cut(s) 441
VspI ATTAAT 1 cut(s) 294
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.