MD16G1037300.v1.1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016650
Physical Location & Seq
Reverse (-)
2693457 .. 2694252
796 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1037300.v1.1.491

Sequence Viewer

Length: 504 bp
ATGTCTCATATTCTTGGAGGAGGAAAAGTGGCCAACATATTATTATGGAAGAACAAGATAATATCTGCTTTAATCTTAAGCGCGCTTACAGGCATATGGATTTTTTTAGAAGTACTAGAATACCAGTTTCTCACTATTCTTTGTAACACCCTCACGATCACCATGCTTGGTATTTTCTTCTTGCAGCAAGGAGGAGCGAGACTAATCGCTCGGTTTGGTTTTGTTCCACCTGATTTGGATGACATTAAACTCTCATCGGAATCGACTTGTAGATACTTGTTCGAAACATTTAACCTGTTCTTGCTCAACGTTTTGGAAATTTCATCTGGAAAAGACTTGAAACTCCTATTTTTGGCAATGGCTTGTCTATGGATATTGTCGGTTATCGGATATCATATCAGCCTTCTGAACCTTTTATATACGAGTGAGATCTCCGACCAGACCAACACAAATACAATACACACAAAACATTATTGCAAATCGATAGTTTTAAAGTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

168

Amino Acids

18.85

Weight (kDa)

6.89

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 10 - 142 1e-23 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016650)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68230 AT1G68230
fragaria_vesca FvH4_4g26750
malus_domestica MD16G1037300.v1.1
prunus_persica Prupe.1G316500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434431
rosa_laevigata RLG00000006672
rosa_multiflora Rmu_co8483911.1_g000001
rosa_roxburghii Rroxscaffold_5G00375790
rosa_samantha Rh4AG332100 Rh4BG340000 Rh4CG355200 Rh4DG335300
rosa_wichuraiana Rw4G028800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 83
AclI AACGTT 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 340
Alw26I GTCTC 2 cut(s) 9, 193
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 318
AspLEI GCGC 2 cut(s) 83, 85
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 282
BalI TGGCCA 1 cut(s) 32
BbvI GCAGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcoDI GTCTC 2 cut(s) 9, 193
BfaI CTAG 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 76
BglII AGATCT 1 cut(s) 429
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 482
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 482
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 124
BsePI GCGCGC 1 cut(s) 81
BseRI GAGGAG 2 cut(s) 33, 207
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 32
BshVI ATCGAT 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 9, 193
BsnI GGCC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 156, 429
BspANI GGCC 1 cut(s) 32
BspDI ATCGAT 1 cut(s) 482
BspFNI CGCG 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 282
BspTI CTTAAG 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 124
BssHII GCGCGC 1 cut(s) 81
BssMI GATC 2 cut(s) 156, 429
BstAFI CTTAAG 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 2 cut(s) 83, 85
BstKTI GATC 2 cut(s) 159, 432
BstMAI GTCTC 2 cut(s) 9, 193
BstMBI GATC 2 cut(s) 156, 429
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 482
BsuRI GGCC 1 cut(s) 32
BsuTUI ATCGAT 1 cut(s) 482
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 2 cut(s) 83, 85
ClaI ATCGAT 1 cut(s) 482
Csp6I GTAC 1 cut(s) 113
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 1 cut(s) 163
CviJI RGCY 3 cut(s) 32, 362, 402
CviKI_1 RGCY 3 cut(s) 32, 362, 402
CviQI GTAC 1 cut(s) 113
DpnI GATC 2 cut(s) 158, 431
DpnII GATC 2 cut(s) 156, 429
DraI TTTAAA 1 cut(s) 492
EaeI YGGCCR 1 cut(s) 30
Eco32I GATATC 1 cut(s) 392
EcoRV GATATC 1 cut(s) 392
FaeI CATG 1 cut(s) 166
FatI CATG 1 cut(s) 162
FauNDI CATATG 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 116
GlaI GCGC 2 cut(s) 82, 84
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 2 cut(s) 83, 85
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 81, 83
HinP1I GCGC 2 cut(s) 81, 83
HinfI GANTC 1 cut(s) 260
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 4 cut(s) 259, 389, 408, 436
Hpy188III TCNNGA 2 cut(s) 154, 327
HpyAV CCTTC 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 184, 477
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 81, 83
Kzo9I GATC 2 cut(s) 156, 429
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 6 cut(s) 75, 137, 243, 308, 312, 452
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 158, 431
MboI GATC 2 cut(s) 156, 429
MboII GAAGA 2 cut(s) 61, 169
MflI RGATCY 1 cut(s) 429
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 318
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 4 cut(s) 11, 14, 161, 185
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 6 cut(s) 71, 77, 246, 291, 491, 502
Msp20I TGGCCA 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 76
MvnI CGCG 1 cut(s) 83
NdeI CATATG 1 cut(s) 95
NdeII GATC 2 cut(s) 156, 429
NlaIII CATG 1 cut(s) 166
NspV TTCGAA 1 cut(s) 282
PauI GCGCGC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 309
PsuI RGATCY 1 cut(s) 429
PteI GCGCGC 1 cut(s) 81
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 6 cut(s) 71, 77, 246, 291, 491, 502
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 156, 429
ScaI AGTACT 1 cut(s) 114
SetI ASST 4 cut(s) 232, 297, 312, 414
SfuI TTCGAA 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 318
SspMI CTAG 1 cut(s) 116
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 263, 282, 482
TasI AATT 1 cut(s) 318
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 6 cut(s) 71, 77, 246, 291, 491, 502
Tru9I TTAA 6 cut(s) 71, 77, 246, 291, 491, 502
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 76
XapI RAATTY 1 cut(s) 318
XspI CTAG 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.