Prupe.1G316500_v2.0.a1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016650
Physical Location & Seq
Forward (+)
30514099 .. 30515332
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G316500.1

Sequence Viewer

Length: 639 bp
ATGTCCATGCGTCAAAGGCCACCGCATGCCATTTTTGGAGGAGGAAAGGTGGCTGACATATTGTTATGGAAGGACAAAACATCAGCGGCTACAATCTTAGCTGTGTTCACCATAATATGGCTTCAACTTGAAGTACTAGAATACCAGTTTTTAACCCTTTTTTGTGACATCCTCATGCTGGCTATGCTTGCCATTTTCGTCTGGCACAAGGGGGCACAACTAGCCAACCTGTATGGTTTTAGGTCTCCAAGCTTGGTCTCTTACATCCGGTGTCCGCCTAATAGCAATAACTTTCAACTCTCAGAATCGGCTTGTAGATACTTCTTTCAACAAATTAACTTCTTTTTGTTCAAATTCTTTGAAATTTCAGCCGGAAAAGACTTGAAACTCCTAGTTTTGGCAATGGTCTGTCTATGGATGTTTTCAGCTCTAGGAGATTGCGTCAGCTCTGTGAGCCTTTTATATACATGCACTCTCCTTCTCGGAACACTGCCTGCTTTGTATGACAGATACGGTGTTCCTTCTCAGGTCGATACATTTGCTGCCAAATGCATCCAAGAGGTGAAGAAATTGTTCCAAATGTTTGAGTCCAAAGTTCTTAACAAGATTCCAGGAATGGGGAAAGAGAGAGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

213

Amino Acids

24.06

Weight (kDa)

8.96

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016650)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68230 AT1G68230
fragaria_vesca FvH4_4g26750
malus_domestica MD16G1037300.v1.1
prunus_persica Prupe.1G316500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434431
rosa_laevigata RLG00000006672
rosa_multiflora Rmu_co8483911.1_g000001
rosa_roxburghii Rroxscaffold_5G00375790
rosa_samantha Rh4AG332100 Rh4BG340000 Rh4CG355200 Rh4DG335300
rosa_wichuraiana Rw4G028800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AciI CCGC 3 cut(s) 23, 86, 275
AcsI RAATTY 2 cut(s) 353, 363
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 4 cut(s) 117, 178, 397, 617
AgsI TTSAA 7 cut(s) 125, 131, 296, 329, 352, 362, 385
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 4 cut(s) 101, 252, 428, 447
AluI AGCT 4 cut(s) 101, 252, 428, 447
Alw26I GTCTC 2 cut(s) 249, 262
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 2 cut(s) 353, 363
Asp700I GAANNNNTTC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 100, 574
BaeGI GKGCMC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 529
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 612
BcoDI GTCTC 2 cut(s) 249, 262
BfaI CTAG 4 cut(s) 137, 221, 392, 431
BisI GCNGC 2 cut(s) 87, 543
BlsI GCNGC 2 cut(s) 88, 544
BmcAI AGTACT 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 612
BmrFI CCNGG 1 cut(s) 612
BmsI GCATC 1 cut(s) 561
BsaI GGTCTC 2 cut(s) 249, 262
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 426, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 178, 397, 617
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 612
BseGI GGATG 4 cut(s) 168, 264, 423, 552
BseLI CCNNNNNNNGG 4 cut(s) 117, 178, 397, 617
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 315, 539
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 1 cut(s) 529
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 2 cut(s) 268, 372
BslI CCNNNNNNNGG 4 cut(s) 117, 178, 397, 617
BsmAI GTCTC 2 cut(s) 249, 262
BsnI GGCC 1 cut(s) 19
Bso31I GGTCTC 2 cut(s) 249, 262
Bsp1286I GDGCHC 1 cut(s) 217
BspACI CCGC 3 cut(s) 23, 86, 275
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 2 cut(s) 314, 538
BspTNI GGTCTC 2 cut(s) 249, 262
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 27, 180, 189, 495
BstDEI CTNAG 3 cut(s) 97, 301, 525
BstF5I GGATG 4 cut(s) 168, 264, 423, 552
BstMAI GTCTC 2 cut(s) 249, 262
BstMWI GCNNNNNNNGC 5 cut(s) 16, 184, 188, 221, 453
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 2 cut(s) 29, 471
BstSCI CCNGG 1 cut(s) 610
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 529
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 4 cut(s) 168, 264, 423, 552
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 1 cut(s) 488
Cac8I GCNNGC 4 cut(s) 27, 180, 189, 495
CseI GACGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 134
CviAII CATG 4 cut(s) 7, 26, 175, 468
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 3 cut(s) 97, 301, 525
EciI GGCGGA 1 cut(s) 264
Eco31I GGTCTC 2 cut(s) 249, 262
EcoRII CCWGG 1 cut(s) 610
EcoT22I ATGCAT 1 cut(s) 554
FaeI CATG 4 cut(s) 10, 29, 178, 471
FatI CATG 4 cut(s) 6, 25, 174, 467
Fnu4HI GCNGC 2 cut(s) 87, 543
FokI GGATG 4 cut(s) 155, 251, 430, 539
Fsp4HI GCNGC 2 cut(s) 87, 543
FspBI CTAG 4 cut(s) 137, 221, 392, 431
GluI GCNGC 2 cut(s) 87, 543
HaeIII GGCC 1 cut(s) 19
HapII CCGG 2 cut(s) 268, 372
HgaI GACGC 1 cut(s) 430
Hin1II CATG 4 cut(s) 10, 29, 178, 471
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 3 cut(s) 305, 587, 607
HpaII CCGG 2 cut(s) 268, 372
HphI GGTGA 2 cut(s) 100, 574
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 304, 485
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 64, 488, 531
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4V TGCA 2 cut(s) 471, 552
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 184, 188, 221, 453
HpyF3I CTNAG 3 cut(s) 97, 301, 525
Hsp92II CATG 4 cut(s) 10, 29, 178, 471
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 1 cut(s) 561
MaeI CTAG 4 cut(s) 137, 221, 392, 431
MaeIII GTNAC 1 cut(s) 164
MboII GAAGA 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 5 cut(s) 333, 353, 363, 569, 634
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 4 cut(s) 32, 35, 182, 553
Mph1103I ATGCAT 1 cut(s) 554
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 3 cut(s) 152, 336, 600
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 268, 372
MspR9I CCNGG 1 cut(s) 612
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 5 cut(s) 16, 184, 188, 221, 453
NlaIII CATG 4 cut(s) 10, 29, 178, 471
NmuCI GTSAC 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 554
NspI RCATGY 2 cut(s) 29, 471
PaeI GCATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 305, 607
PflMI CCANNNNNTGG 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 2 cut(s) 88, 544
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 152, 336, 600
SatI GCNGC 2 cut(s) 87, 543
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 1 cut(s) 217
SetI ASST 9 cut(s) 51, 103, 231, 245, 254, 430, 449, 531, 564
SfaNI GCATC 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 29
Sse9I AATT 5 cut(s) 333, 353, 363, 569, 634
SsiI CCGC 3 cut(s) 23, 86, 275
SspMI CTAG 4 cut(s) 137, 221, 392, 431
StyD4I CCNGG 1 cut(s) 610
TaaI ACNGT 1 cut(s) 515
TaqI TCGA 1 cut(s) 531
TasI AATT 5 cut(s) 333, 353, 363, 569, 634
TatI WGTACW 1 cut(s) 133
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 305, 607
Tru1I TTAA 3 cut(s) 152, 336, 600
Tru9I TTAA 3 cut(s) 152, 336, 600
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 1 cut(s) 495
Van91I CCANNNNNTGG 1 cut(s) 117
XapI RAATTY 2 cut(s) 353, 363
XceI RCATGY 2 cut(s) 29, 471
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 4 cut(s) 137, 221, 392, 431
ZrmI AGTACT 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.