Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Reverse (-)

25810321 .. 25811180

Gene Structure 860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCGAATACTGCCGCCGGTTGGTCTCCGGTTTTGGCTCCAATCTATTCTCCGGTAAACACAAAGCCAATCAATTTTCACTTCTCAGCTTCTTTCTACAAGCCTCCTCGTCCATTTTACAAGCAGCAAAACCCTATATCGGCTCTACACAGGTCGAAAACTACTCGTGTGATAGAGGTAGTAACACCAAAGCAAAGGAATCGTTCTTTTTCTGTTTTTGGATCACTCGCTGATGATTCTAAGTTAAACCCAGATGAAGAATCAAATGATTCCGCAGAGGTAGCTTCTATAGATATTAAGCTACCGAGAAGAAGTTTGCAAGTGGAATTTACTTGCAATTCATGTGGAGAAAGAACTAAGCGGCTTATCAATAGGCATGCCTATGAAAAGGGCCTTGTCTTTGTTCAATGTGCAGGGTGTCTAAAGCATCATAAACTGGTTGACAATCTTGGTCTCATTGTTGAGTATGATTTCCGGGAAACCTCCAAGGATTTGGGTACCGATCACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

170

Amino Acids

19.16

Weight (kDa)

9.08

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	108 - 155	8.1e-17	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	3 cut(s)	15, 273, 361
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	21, 139
AgsI	TTSAA	1 cut(s)	407
AluBI	AGCT	3 cut(s)	89, 284, 301
AluI	AGCT	3 cut(s)	89, 284, 301
Alw26I	GTCTC	2 cut(s)	30, 458
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	326
Asp718I	GGTACC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	2 cut(s)	30, 458
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	3 cut(s)	15, 125, 362
BlsI	GCNGC	3 cut(s)	16, 126, 363
Bme1390I	CCNGG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	39, 499
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	436
BpuMI	CCSGG	1 cut(s)	476
BsaI	GGTCTC	2 cut(s)	30, 458
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	2 cut(s)	28, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 139
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	21, 139
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	497
BsiSI	CCGG	4 cut(s)	18, 29, 53, 475
BslI	CCNNNNNNNGG	2 cut(s)	21, 139
BsmAI	GTCTC	2 cut(s)	30, 458
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	2 cut(s)	30, 458
Bsp143I	GATC	2 cut(s)	221, 502
BspACI	CCGC	3 cut(s)	15, 273, 361
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	39, 499
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	2 cut(s)	30, 458
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	221, 502
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	3 cut(s)	85, 240, 357
BstKTI	GATC	2 cut(s)	224, 505
BstMAI	GTCTC	2 cut(s)	30, 458
BstMBI	GATC	2 cut(s)	221, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 281
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	498
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	342, 377
CviJI	RGCY	9 cut(s)	38, 67, 89, 103, 143, 284, 301, 364, 393
CviKI_1	RGCY	9 cut(s)	38, 67, 89, 103, 143, 284, 301, 364, 393
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	3 cut(s)	85, 240, 357
DpnI	GATC	2 cut(s)	223, 504
DpnII	GATC	2 cut(s)	221, 502
Eco130I	CCWWGG	1 cut(s)	486
Eco31I	GGTCTC	2 cut(s)	30, 458
EcoO109I	RGGNCCY	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	345, 380
FaiI	YATR	7 cut(s)	137, 290, 343, 378, 384, 432, 468
FatI	CATG	2 cut(s)	341, 376
Fnu4HI	GCNGC	3 cut(s)	15, 125, 362
Fsp4HI	GCNGC	3 cut(s)	15, 125, 362
GluI	GCNGC	3 cut(s)	15, 125, 362
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	4 cut(s)	18, 29, 53, 475
Hin1II	CATG	2 cut(s)	345, 380
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	4 cut(s)	199, 236, 260, 269
HpaII	CCGG	4 cut(s)	18, 29, 53, 475
Hpy166II	GTNNAC	2 cut(s)	58, 442
Hpy8I	GTNNAC	2 cut(s)	58, 442
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	3 cut(s)	319, 336, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 281
HpyF3I	CTNAG	3 cut(s)	85, 240, 357
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	2 cut(s)	345, 380
KpnI	GGTACC	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	221, 502
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	31, 42, 66, 136, 264, 399, 422, 488
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	223, 504
MboI	GATC	2 cut(s)	221, 502
MboII	GAAGA	2 cut(s)	269, 321
MluCI	AATT	3 cut(s)	73, 326, 337
MnlI	CCTC	5 cut(s)	114, 117, 169, 271, 493
MseI	TTAA	2 cut(s)	245, 297
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	4 cut(s)	18, 29, 53, 475
MspR9I	CCNGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	11, 281
NciI	CCSGG	1 cut(s)	476
NdeII	GATC	2 cut(s)	221, 502
NlaIII	CATG	2 cut(s)	345, 380
NlaIV	GGNNCC	2 cut(s)	39, 499
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PfeI	GAWTC	4 cut(s)	199, 236, 260, 269
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	3 cut(s)	16, 126, 363
PspN4I	GGNNCC	2 cut(s)	39, 499
PspPI	GGNCC	1 cut(s)	391
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	245, 297
SatI	GCNGC	3 cut(s)	15, 125, 362
Sau3AI	GATC	2 cut(s)	221, 502
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	476
SetI	ASST	8 cut(s)	91, 155, 180, 282, 286, 303, 485, 510
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	381
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	3 cut(s)	73, 326, 337
SsiI	CCGC	3 cut(s)	15, 273, 361
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	486
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	155
TasI	AATT	3 cut(s)	73, 326, 337
TauI	GCSGC	2 cut(s)	17, 364
TfiI	GAWTC	4 cut(s)	199, 236, 260, 269
Tru1I	TTAA	2 cut(s)	245, 297
Tru9I	TTAA	2 cut(s)	245, 297
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	270, 330, 399
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.