Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Forward (+)

29079558 .. 29082008

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCTTGTGACCTTTGTATTCTAACTTCTGCTCTTGGCAAATCAACTGTTACAGAGTCACACACACTCATGGCGGCAACATCAACTGTTACCCTTCCATTTTTCTCGCCTCCCACAACTAACCCTCATAAACCCATTAAAACCCTTCAAGGTCCTAACTTTTTCAGACCCTTTTCTGCTCCCAGGAGAAAACCCATCAGCCTCTGCAGCTCAAGAATTTCCCATGTGAGAGCTGTAGCGCCAAAGCTTGCTCACAAAGCTTTGGCTGTTTCTGGGTTGAGTGGCGGCGATTCTGAAACAGACGCAGAATTGGAACAGAACAATCTGAATAGGGATGCCGCCATTGATTTACAACTACCAAGACGAAGCCTGCTAGTGAAGTTTACTTGTGATTTGTGTAATGAAAGAACAAGCAAACTCGTGAACCGATTGGCATATGAAAAGGGGCTTATTTATGTGCAGTGTGCAGGGTGCCTCAAGTATCACAAGTTAGTTGATAATCTTGGCCTTGTAGTTGAATATGACTTGAGAGGGGATATGGATTCGGATTCAAATGCAGATGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

8.48

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	126 - 172	1.7e-14	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	471
AciI	CCGC	3 cut(s)	74, 285, 339
AcsI	RAATTY	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	149, 518, 552
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	4 cut(s)	210, 233, 247, 260
AluI	AGCT	4 cut(s)	210, 233, 247, 260
AlwNI	CAGNNNCTG	1 cut(s)	204
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	471
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BauI	CACGAG	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	184
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	2 cut(s)	205, 234
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	4 cut(s)	75, 208, 286, 339
BlsI	GCNGC	4 cut(s)	76, 209, 287, 340
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	325, 550
BpuEI	CTTGAG	3 cut(s)	196, 461, 547
BsaJI	CCNNGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	219
BsgI	GTGCAG	2 cut(s)	479, 486
BshFI	GGCC	1 cut(s)	507
BshNI	GGYRCC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	507
BspACI	CCGC	3 cut(s)	74, 285, 339
BspANI	GGCC	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	49, 88
BstC8I	GCNNGC	2 cut(s)	249, 371
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 257
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	205, 234
BstV1I	GCAGC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	2 cut(s)	249, 371
CaiI	CAGNNNCTG	1 cut(s)	204
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	311
CviAII	CATG	2 cut(s)	70, 224
CviJI	RGCY	9 cut(s)	201, 210, 233, 247, 260, 266, 369, 448, 507
CviKI_1	RGCY	9 cut(s)	201, 210, 233, 247, 260, 266, 369, 448, 507
Eco47I	GGWCC	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	73, 227
FaiI	YATR	8 cut(s)	71, 129, 225, 436, 438, 456, 522, 539
FatI	CATG	2 cut(s)	69, 223
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	75, 208, 286, 339
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	4 cut(s)	75, 208, 286, 339
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	4 cut(s)	75, 208, 286, 339
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	507
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	73, 227
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HindIII	AAGCTT	2 cut(s)	245, 258
HinfI	GANTC	4 cut(s)	56, 290, 542, 548
Hpy166II	GTNNAC	2 cut(s)	384, 424
Hpy188I	TCNGA	4 cut(s)	167, 295, 327, 547
Hpy188III	TCNNGA	2 cut(s)	213, 421
Hpy8I	GTNNAC	2 cut(s)	384, 424
HpyAV	CCTTC	2 cut(s)	104, 155
HpyCH4III	ACNGT	2 cut(s)	49, 88
HpyCH4V	TGCA	5 cut(s)	207, 460, 467, 557, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 257
Hsp92II	CATG	2 cut(s)	73, 227
HspAI	GCGC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	169, 196, 258, 383, 453
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	2 cut(s)	325, 550
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	4 cut(s)	8, 49, 57, 88
MluCI	AATT	2 cut(s)	216, 308
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	120, 135, 212, 485, 524
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	207, 257
NdeI	CATATG	1 cut(s)	436
NlaIII	CATG	2 cut(s)	73, 227
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	2 cut(s)	8, 57
PfeI	GAWTC	3 cut(s)	290, 542, 548
PkrI	GCNGC	4 cut(s)	76, 209, 287, 340
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	152
PspPPI	RGGWCCY	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	4 cut(s)	75, 208, 286, 339
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	6 cut(s)	15, 154, 212, 235, 249, 262
SfaNI	GCATC	2 cut(s)	325, 550
SfcI	CTRYAG	2 cut(s)	205, 234
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	3 cut(s)	211, 476, 526
SmoI	CTYRAG	3 cut(s)	211, 476, 526
Sse9I	AATT	2 cut(s)	216, 308
SsiI	CCGC	3 cut(s)	74, 285, 339
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	49, 88
TasI	AATT	2 cut(s)	216, 308
TauI	GCSGC	3 cut(s)	77, 288, 341
TfiI	GAWTC	3 cut(s)	290, 542, 548
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	467
TseFI	GTSAC	2 cut(s)	8, 57
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	2 cut(s)	8, 57
TspDTI	ATGAA	2 cut(s)	417, 453
TspRI	CASTG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	216
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.