Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Forward (+)

3634474 .. 3636139

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1050900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCGGCGACACCAACCGCCAGCGGTTTCTCCCCCGCCGTTCCATCCCTCTCGCTTCCCATAACTAACCCTAATAAACCCATTTGGTTTTTCAGACCCTTTTCTGCTTCGAAGAAAATTCCTACCGTCGGCCTCTCCTGGTCCTCCAACCGCGGACGAAACCCTGTCTCAAGAATTTCCCATGCGGCAGGTGTAGCACTAAAGCGTGGCCATGTGGTGCTGGCTGTTTCTGGGTTGATGAGTAGCATTTCTGAGACGAACGCAGAATTGGAACCGAATAATCTGAATACGGATGCCACGATTGATATACAACTTCCAAGAAGAAGCTTGCTTGTGAAATTTACTTGTAACTTGTGTGGTGAAAGGACAAATAGACTCGTCAATCGATTGGCTTATGAGCGGGGGCTAATTTACGTACAGTGTGCAGGGTGTCAAAAGTATCACAAGTTAGCTGATAATCTTGGCCTTGTGGTTGAGTATGACTTAAGGGAGGATATCGATTTGGACACAAATACGGATGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

176

Amino Acids

19.17

Weight (kDa)

8.75

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	112 - 159	1.6e-15	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	400
AccII	CGCG	1 cut(s)	153
AciI	CCGC	8 cut(s)	5, 18, 24, 36, 151, 153, 185, 400
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	3 cut(s)	117, 174, 338
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	2 cut(s)	327, 452
AluI	AGCT	2 cut(s)	327, 452
Alw26I	GTCTC	2 cut(s)	172, 248
AoxI	GGCC	3 cut(s)	130, 208, 463
ApoI	RAATTY	3 cut(s)	117, 174, 338
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	210
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	172, 248
BfrI	CTTAAG	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	6, 186
BlsI	GCNGC	2 cut(s)	7, 187
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	154
Bsa29I	ATCGAT	2 cut(s)	385, 498
BsaAI	YACGTR	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	139
BseCI	ATCGAT	2 cut(s)	385, 498
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	44, 298, 523
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	132, 210, 465
BshVI	ATCGAT	2 cut(s)	385, 498
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	172, 248
BsmBI	CGTCTC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	132, 210, 465
Bsp119I	TTCGAA	1 cut(s)	110
BspACI	CCGC	8 cut(s)	5, 18, 24, 36, 151, 153, 185, 400
BspANI	GGCC	3 cut(s)	132, 210, 465
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	2 cut(s)	385, 498
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	127, 420
BstAFI	CTTAAG	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	22, 222, 329
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	44, 298, 523
BstFNI	CGCG	1 cut(s)	153
BstMAI	GTCTC	2 cut(s)	172, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSNI	TACGTA	1 cut(s)	415
BstUI	CGCG	1 cut(s)	153
Bsu15I	ATCGAT	2 cut(s)	385, 498
BsuRI	GGCC	3 cut(s)	132, 210, 465
BsuTUI	ATCGAT	2 cut(s)	385, 498
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	44, 298, 523
BtsIMutI	CAGTG	1 cut(s)	425
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	3 cut(s)	22, 222, 329
Cfr13I	GGNCC	1 cut(s)	141
Cfr42I	CCGCGG	1 cut(s)	154
ClaI	ATCGAT	2 cut(s)	385, 498
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	2 cut(s)	182, 212
CviJI	RGCY	8 cut(s)	132, 210, 224, 327, 392, 406, 452, 465
CviKI_1	RGCY	8 cut(s)	132, 210, 224, 327, 392, 406, 452, 465
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	208
Eco105I	TACGTA	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	2 cut(s)	185, 215
FaiI	YATR	6 cut(s)	62, 183, 213, 308, 396, 480
FatI	CATG	2 cut(s)	181, 211
FauI	CCCGC	2 cut(s)	43, 393
Fnu4HI	GCNGC	2 cut(s)	6, 186
FokI	GGATG	2 cut(s)	31, 305
Fsp4HI	GCNGC	2 cut(s)	6, 186
GluI	GCNGC	2 cut(s)	6, 186
HaeIII	GGCC	3 cut(s)	132, 210, 465
Hin1II	CATG	2 cut(s)	185, 215
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	1 cut(s)	375
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	3 cut(s)	95, 253, 285
Hpy188III	TCNNGA	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	2 cut(s)	127, 420
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	185, 215
KspI	CCGCGG	1 cut(s)	154
LpnPI	CCDG	8 cut(s)	34, 124, 151, 174, 177, 206, 216, 411
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	347
MbiI	CCGCTC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	124, 333
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	5 cut(s)	117, 174, 266, 338, 408
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	4 cut(s)	59, 143, 154, 484
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	2 cut(s)	24, 153
MspCI	CTTAAG	1 cut(s)	484
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	185, 215
NlaIV	GGNNCC	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	7, 187
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Ppu21I	YACGTR	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	141
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	2 cut(s)	6, 186
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	4 cut(s)	193, 329, 417, 454
SfaNI	GCATC	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	169, 484
SmoI	CTYRAG	2 cut(s)	169, 484
SnaBI	TACGTA	1 cut(s)	415
Sse9I	AATT	5 cut(s)	117, 174, 266, 338, 408
SsiI	CCGC	8 cut(s)	5, 18, 24, 36, 151, 153, 185, 400
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	127, 420
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	110, 385, 498
TasI	AATT	5 cut(s)	117, 174, 266, 338, 408
TauI	GCSGC	2 cut(s)	8, 188
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	3 cut(s)	117, 174, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.