Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Forward (+)

62564574 .. 62565715

Gene Structure 1142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGGCAACATCAACTTCTACCCTTCCATTTTTCTCGTCTCCCACAACTAACCCTCATAAACCCATTAAAACCCTTCAATCTCCCAACTTTGTCAGACCCTTTTCTGCTTCCAAGAGAAACCATATCGGCCTCTGCAGCTTAAGAATTTCCCATGTGAGAGCTGTAGCACCGAAGCTTGCCCACAAAGCTTTGGCTGTTTCTGGGTTGATGAGTGGCAGCGATTCTGAAACAGACGCAGAATTGGAACAGAACAATCTGAATTCGGATGCCACCATTGACCTACAACTCCCAAGAAGAAGCCTGCTAGTAAAGTTTACTTGTGATTTGTGTAATGAAAGAACAAGCAAACTCGTTAACCGATTGGCATATGAAAAGGGGCTTATTTATGTGCAGTGTGCAGGGTGTCTCAAGTATCACAAGTTAGTTGATAATCTTGGCCTTGTGGTTGAGTATGACTTAAGAGGGGATATGGATTTGGACTCAAATGCAGATGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

167

Amino Acids

18.36

Weight (kDa)

7.67

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	104 - 150	1.3e-14	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	147, 262
AflII	CTTAAG	2 cut(s)	142, 460
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	4 cut(s)	141, 164, 178, 191
AluI	AGCT	4 cut(s)	141, 164, 178, 191
Alw26I	GTCTC	2 cut(s)	45, 413
AoxI	GGCC	2 cut(s)	130, 439
ApeKI	GCWGC	2 cut(s)	138, 219
ApoI	RAATTY	2 cut(s)	147, 262
BbvI	GCAGC	2 cut(s)	150, 231
BcoDI	GTCTC	2 cut(s)	45, 413
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	2 cut(s)	136, 165
BfrI	CTTAAG	2 cut(s)	142, 460
BisI	GCNGC	3 cut(s)	6, 139, 220
BlsI	GCNGC	3 cut(s)	7, 140, 221
BmsI	GCATC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	150, 231
BsgI	GTGCAG	2 cut(s)	413, 420
BshFI	GGCC	2 cut(s)	132, 441
BsmAI	GTCTC	2 cut(s)	45, 413
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	132, 441
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	132, 441
BspMAI	CTGCAG	1 cut(s)	140
BspTI	CTTAAG	2 cut(s)	142, 460
BstAFI	CTTAAG	2 cut(s)	142, 460
BstC8I	GCNNGC	2 cut(s)	180, 305
BstF5I	GGATG	1 cut(s)	274
BstMAI	GTCTC	2 cut(s)	45, 413
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 188
BstSFI	CTRYAG	2 cut(s)	136, 165
BstV1I	GCAGC	2 cut(s)	150, 231
BsuRI	GGCC	2 cut(s)	132, 441
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	180, 305
CseI	GACGC	1 cut(s)	245
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	9 cut(s)	132, 141, 164, 178, 191, 197, 303, 382, 441
CviKI_1	RGCY	9 cut(s)	132, 141, 164, 178, 191, 197, 303, 382, 441
EcoRI	GAATTC	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	158
FaiI	YATR	8 cut(s)	60, 126, 156, 370, 372, 390, 456, 473
FatI	CATG	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	6, 139, 220
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	6, 139, 220
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	3 cut(s)	6, 139, 220
HaeIII	GGCC	2 cut(s)	132, 441
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	2 cut(s)	176, 189
HinfI	GANTC	2 cut(s)	224, 482
HpaI	GTTAAC	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	318, 358
Hpy188I	TCNGA	4 cut(s)	98, 229, 261, 268
Hpy8I	GTNNAC	2 cut(s)	318, 358
HpyAV	CCTTC	2 cut(s)	35, 86
HpyCH4V	TGCA	4 cut(s)	138, 394, 401, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 188
Hsp92II	CATG	1 cut(s)	158
KspAI	GTTAAC	1 cut(s)	358
LpnPI	CCDG	3 cut(s)	189, 317, 387
Lsp1109I	GCAGC	2 cut(s)	150, 231
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	308
MboII	GAAGA	1 cut(s)	309
MluCI	AATT	3 cut(s)	147, 242, 262
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	3 cut(s)	66, 143, 458
MseI	TTAA	4 cut(s)	69, 143, 357, 461
MspCI	CTTAAG	2 cut(s)	142, 460
MwoI	GCNNNNNNNGC	2 cut(s)	138, 188
NdeI	CATATG	1 cut(s)	370
NlaIII	CATG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	7, 140, 221
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	69, 143, 357, 461
SatI	GCNGC	3 cut(s)	6, 139, 220
SchI	GAGTC	1 cut(s)	476
SetI	ASST	5 cut(s)	143, 166, 180, 193, 285
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	2 cut(s)	136, 165
SmlI	CTYRAG	3 cut(s)	142, 410, 460
SmoI	CTYRAG	3 cut(s)	142, 410, 460
Sse9I	AATT	3 cut(s)	147, 242, 262
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	308
TasI	AATT	3 cut(s)	147, 242, 262
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	4 cut(s)	69, 143, 357, 461
Tru9I	TTAA	4 cut(s)	69, 143, 357, 461
TscAI	CASTG	1 cut(s)	401
TseI	GCWGC	2 cut(s)	138, 219
TspDTI	ATGAA	2 cut(s)	351, 387
TspRI	CASTG	1 cut(s)	401
Vha464I	CTTAAG	2 cut(s)	142, 460
XapI	RAATTY	2 cut(s)	147, 262
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.