Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Reverse (-)

29654993 .. 29656690

Gene Structure 1698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G301800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGGCAACACTAACTGCCTGGAGTTTATCTCCAGCCCTTCCTTCTCTCTCGTCTCCAATAACTAATTCTCATAAACCCATTAAAGCCCTTCTTCATCCCAACTTTCTCAGACCCTTTTCTTCTACCAAGACAAACCCTGTCATCGGCCTCTCCAGGTCCTTAACCCAAGTACAAAACCCTCTCTGCTCAAGAATTTCCTATACGGCCGCTGTAGCGCCAAAGCGTGCCTATAAGGTACTGGCTGTTTCTGGACTGTTGAATGGCAATTTTGAAACAGACGGAGAATTGGAACGGAACATTCCGAATACGGATGCTACTATTGATATACAACTCCCAAGAAGAAGCTTGCTTGTAAAATTTACTTGTGATTTGTGCGGTGAAAGAACAGATAGGCTCGTGAATCGATTGGCCTATGAGCGGGGGCTTATTTACGTACAGTGTGCAGGGTGTCTCAAGCATCACAAATTAGTTGATAATCTTGGCCTTGTGGTTGAGTATGACCTAAGGAAGGATATCGATGTGGACACAGAGACGGATAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

183

Amino Acids

20.12

Weight (kDa)

8.84

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	421
AciI	CCGC	4 cut(s)	5, 210, 378, 421
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	195, 359
AfaI	GTAC	3 cut(s)	174, 240, 438
AfiI	CCNNNNNNNGG	3 cut(s)	146, 420, 511
AgsI	TTSAA	2 cut(s)	262, 275
AjnI	CCWGG	2 cut(s)	20, 155
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw26I	GTCTC	3 cut(s)	60, 458, 527
AoxI	GGCC	4 cut(s)	148, 207, 411, 484
ApoI	RAATTY	2 cut(s)	195, 359
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	506
BauI	CACGAG	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	22, 157
BcoDI	GTCTC	3 cut(s)	60, 458, 527
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	2 cut(s)	6, 210
BlsI	GCNGC	2 cut(s)	7, 211
Bme1390I	CCNGG	2 cut(s)	22, 157
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	22, 157
BmsI	GCATC	2 cut(s)	304, 469
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	3 cut(s)	18, 43, 139
BpuEI	CTTGAG	2 cut(s)	175, 440
Bsa29I	ATCGAT	2 cut(s)	406, 519
BsaAI	YACGTR	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 420, 511
Bse1I	ACTGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	506
BseBI	CCWGG	2 cut(s)	22, 157
BseCI	ATCGAT	2 cut(s)	406, 519
BseGI	GGATG	2 cut(s)	97, 319
BseLI	CCNNNNNNNGG	3 cut(s)	146, 420, 511
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	246
BseX3I	CGGCCG	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	150, 209, 413, 486
BshVI	ATCGAT	2 cut(s)	406, 519
BsiEI	CGRYCG	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	146, 420, 511
BsmAI	GTCTC	3 cut(s)	60, 458, 527
BsmBI	CGTCTC	2 cut(s)	60, 527
BsnI	GGCC	4 cut(s)	150, 209, 413, 486
BspACI	CCGC	4 cut(s)	5, 210, 378, 421
BspANI	GGCC	4 cut(s)	150, 209, 413, 486
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	2 cut(s)	406, 519
BsrBI	CCGCTC	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	22, 157
Bst4CI	ACNGT	2 cut(s)	258, 441
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	228, 350
BstDEI	CTNAG	2 cut(s)	110, 506
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	97, 319
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstMAI	GTCTC	3 cut(s)	60, 458, 527
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	22, 157
BstSCI	CCNGG	2 cut(s)	20, 155
BstSFI	CTRYAG	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	207
Bsu15I	ATCGAT	2 cut(s)	406, 519
Bsu36I	CCTNAGG	1 cut(s)	506
BsuRI	GGCC	4 cut(s)	150, 209, 413, 486
BsuTUI	ATCGAT	2 cut(s)	406, 519
BtsCI	GGATG	2 cut(s)	97, 319
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	2 cut(s)	228, 350
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	159
ClaI	ATCGAT	2 cut(s)	406, 519
Csp6I	GTAC	3 cut(s)	173, 239, 437
CviQI	GTAC	3 cut(s)	173, 239, 437
DdeI	CTNAG	2 cut(s)	110, 506
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
EclXI	CGGCCG	1 cut(s)	207
Eco105I	TACGTA	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	20, 155
EcoRV	GATATC	1 cut(s)	517
Esp3I	CGTCTC	2 cut(s)	60, 527
FaiI	YATR	6 cut(s)	75, 204, 234, 329, 417, 501
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FauI	CCCGC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	6, 210
FokI	GGATG	2 cut(s)	84, 326
Fsp4HI	GCNGC	2 cut(s)	6, 210
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	6, 210
GsuI	CTGGAG	3 cut(s)	18, 43, 139
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	150, 209, 413, 486
HhaI	GCGC	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	1 cut(s)	403
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	2 cut(s)	113, 306
Hpy188III	TCNNGA	3 cut(s)	192, 252, 400
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	4 cut(s)	50, 54, 101, 505
HpyCH4III	ACNGT	2 cut(s)	258, 441
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	110, 506
HpySE526I	ACGT	1 cut(s)	435
HspAI	GCGC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	7, 34, 48, 142, 153, 169, 227, 237, 432
LweI	GCATC	2 cut(s)	304, 469
MaeII	ACGT	1 cut(s)	435
MbiI	CCGCTC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	86, 114, 354
MluCI	AATT	6 cut(s)	67, 195, 268, 287, 359, 467
MnlI	CCTC	2 cut(s)	161, 192
MseI	TTAA	2 cut(s)	84, 164
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	22, 157
MvaI	CCWGG	2 cut(s)	22, 157
MwoI	GCNNNNNNNGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	7, 211
Ppu21I	YACGTR	1 cut(s)	436
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	20, 155
PspGI	CCWGG	2 cut(s)	20, 155
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
RsaI	GTAC	3 cut(s)	174, 240, 438
RsaNI	GTAC	3 cut(s)	173, 239, 437
SaqAI	TTAA	2 cut(s)	84, 164
SatI	GCNGC	2 cut(s)	6, 210
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	22, 157
SetI	ASST	5 cut(s)	161, 240, 350, 438, 507
SfaNI	GCATC	2 cut(s)	304, 469
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	190, 455
SmoI	CTYRAG	2 cut(s)	190, 455
SnaBI	TACGTA	1 cut(s)	436
Sse9I	AATT	6 cut(s)	67, 195, 268, 287, 359, 467
SsiI	CCGC	4 cut(s)	5, 210, 378, 421
StyD4I	CCNGG	2 cut(s)	20, 155
TaaI	ACNGT	2 cut(s)	258, 441
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	406, 519
TasI	AATT	6 cut(s)	67, 195, 268, 287, 359, 467
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	2 cut(s)	8, 212
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	84, 164
Tru9I	TTAA	2 cut(s)	84, 164
TscAI	CASTG	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	3 cut(s)	297, 310, 326
TspRI	CASTG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	509
XapI	RAATTY	2 cut(s)	195, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.