Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Forward (+)

59674757 .. 59675971

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCGGCAACATCAACTTCTACCCTTCCATTTTTCTCCTCTCCCACAACTAACCCTCATAAACCCATTAAAACCCTTCAATCTCCCAACTTTGTCAGACCCTTTTCTGCTTCCAAGAGAAACAGCTTAAGAATTTCCCATGTGAGAGCTGTAGCACCGAAGCTTGCCCGCAAAGCTTTGGCTGTTTCTGGGTTGATGAGTGGCAGCGATTCTGAAACAGACGCAGAATTAGAACAGAACAATCTGAATTCGGATGCCACCATTGACCTACAACTCCCAAGAAGAAGCCTGCTAGTAAAGTTTACTTGTGATTTGTGTAATGAAAGAACAAGCAAACTCGTTAACCGATTGGCATATGAAAAGGGGCTTATTTATGTGCAGTGTGCAGGGTGTCTCAAGTATCACAAGTTAGTTGATAATCTTGGCCTTGTGGTTGAGTATGACTTAAGAGGGGATATCGATTTGGAATCAAATGCAGATGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

162

Amino Acids

17.85

Weight (kDa)

8.36

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	99 - 146	9.6e-15	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 169
AcsI	RAATTY	2 cut(s)	132, 247
AflII	CTTAAG	2 cut(s)	127, 445
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	4 cut(s)	126, 149, 163, 176
AluI	AGCT	4 cut(s)	126, 149, 163, 176
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	132, 247
BbvI	GCAGC	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	150
BfrI	CTTAAG	2 cut(s)	127, 445
BisI	GCNGC	2 cut(s)	6, 205
BlsI	GCNGC	2 cut(s)	7, 206
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	459
BseGI	GGATG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	216
BsgI	GTGCAG	2 cut(s)	398, 405
BshFI	GGCC	1 cut(s)	426
BshVI	ATCGAT	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	5, 169
BspANI	GGCC	1 cut(s)	426
BspDI	ATCGAT	1 cut(s)	459
BspTI	CTTAAG	2 cut(s)	127, 445
BstAFI	CTTAAG	2 cut(s)	127, 445
BstC8I	GCNNGC	3 cut(s)	165, 169, 290
BstF5I	GGATG	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	426
BsuTUI	ATCGAT	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	3 cut(s)	165, 169, 290
ClaI	ATCGAT	1 cut(s)	459
CseI	GACGC	1 cut(s)	230
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	8 cut(s)	126, 149, 163, 176, 182, 288, 367, 426
CviKI_1	RGCY	8 cut(s)	126, 149, 163, 176, 182, 288, 367, 426
Eco32I	GATATC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	457
FaeI	CATG	1 cut(s)	143
FaiI	YATR	6 cut(s)	60, 141, 355, 357, 375, 441
FatI	CATG	1 cut(s)	139
FauI	CCCGC	1 cut(s)	176
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	6, 205
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	6, 205
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	2 cut(s)	6, 205
HaeIII	GGCC	1 cut(s)	426
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	161, 174
HinfI	GANTC	2 cut(s)	209, 467
HpaI	GTTAAC	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	303, 343
Hpy188I	TCNGA	4 cut(s)	98, 214, 246, 253
Hpy8I	GTNNAC	2 cut(s)	303, 343
HpyAV	CCTTC	2 cut(s)	35, 86
HpyCH4V	TGCA	3 cut(s)	379, 386, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	143
KspAI	GTTAAC	1 cut(s)	343
LpnPI	CCDG	3 cut(s)	174, 302, 372
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	293
MboII	GAAGA	1 cut(s)	294
MluCI	AATT	3 cut(s)	132, 227, 247
MnlI	CCTC	3 cut(s)	49, 66, 443
MseI	TTAA	4 cut(s)	69, 128, 342, 446
MspCI	CTTAAG	2 cut(s)	127, 445
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeI	CATATG	1 cut(s)	355
NlaIII	CATG	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	209, 467
PkrI	GCNGC	2 cut(s)	7, 206
SaqAI	TTAA	4 cut(s)	69, 128, 342, 446
SatI	GCNGC	2 cut(s)	6, 205
SetI	ASST	5 cut(s)	128, 151, 165, 178, 270
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	127, 395, 445
SmoI	CTYRAG	3 cut(s)	127, 395, 445
Sse9I	AATT	3 cut(s)	132, 227, 247
SsiI	CCGC	2 cut(s)	5, 169
SspMI	CTAG	1 cut(s)	293
TaqI	TCGA	1 cut(s)	459
TasI	AATT	3 cut(s)	132, 227, 247
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	209, 467
Tru1I	TTAA	4 cut(s)	69, 128, 342, 446
Tru9I	TTAA	4 cut(s)	69, 128, 342, 446
TscAI	CASTG	1 cut(s)	386
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	2 cut(s)	336, 372
TspRI	CASTG	1 cut(s)	386
Vha464I	CTTAAG	2 cut(s)	127, 445
XapI	RAATTY	2 cut(s)	132, 247
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.