Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Forward (+)

2833460 .. 2835158

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGATTGTGTCTACAGCCCTAAATTACATCCTTGCAACTGCAATCGGAAACAAAACAGAGAAAATTTCAGAGTCCACAGAGCTACATCCATGGCGGCGACACCAACCGCCCGCGGTTTCTCCCCCGCCGTTCCATCCCTCTCGCCTCCCATAACTAACCCTAATAAACCCATTTGGTTTTTCAGACCTTTTTCTGCTTCCAAGAAAATTCCTACGGTCGGCCTCTCCTGGTCCTCCACCCGCGGACGAAACCCTCTGTGCTCAAGAATTTCCCATACGGCAGGTGTAGCACCAAAGCGTGGCCATGTGGTGCTGGCTGTTTCTGGGTTGATGAGTGGCAATTCTGAGACGGACGCAGAATTGGAACCGAATAATCTGAATACGGATGCCACGATTGACATACAACTCCCAAGAAGAAGCTTGCTTGTGAAATTTACTTGTAACTTGTGTGGTGAAAGGACAAATAGACTTGTCAATCGATTGGCATATGAGCGGGGGCTAATCTACGTACAGTGTGCAGGGTGTCAAAAGTATCACGAGTTAGCTGATAATCTTGGCCTTGTGGTTGAGTATGACTTAAGGGAGGATATCGATGTAGTCACAAATACGGATGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

207

Amino Acids

22.87

Weight (kDa)

8.97

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	143 - 190	3.2e-15	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	2 cut(s)	114, 243
AciI	CCGC	8 cut(s)	95, 108, 112, 114, 126, 241, 243, 493
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	4 cut(s)	64, 207, 267, 431
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	218, 299
AflII	CTTAAG	1 cut(s)	577
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	3 cut(s)	83, 420, 545
AluI	AGCT	3 cut(s)	83, 420, 545
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	341
AoxI	GGCC	3 cut(s)	220, 301, 556
ApoI	RAATTY	4 cut(s)	64, 207, 267, 431
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	303
BauI	CACGAG	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	263
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	2 cut(s)	113, 294
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	247
Bsa29I	ATCGAT	2 cut(s)	478, 591
BsaAI	YACGTR	1 cut(s)	508
BsaJI	CCNNGG	3 cut(s)	90, 112, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 299
BseBI	CCWGG	1 cut(s)	229
BseCI	ATCGAT	2 cut(s)	478, 591
BseDI	CCNNGG	3 cut(s)	90, 112, 241
BseGI	GGATG	5 cut(s)	28, 86, 134, 391, 616
BseLI	CCNNNNNNNGG	2 cut(s)	218, 299
BseMII	CTCAG	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	2 cut(s)	114, 243
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	222, 303, 558
BshVI	ATCGAT	2 cut(s)	478, 591
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	218, 299
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	222, 303, 558
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	8 cut(s)	95, 108, 112, 114, 126, 241, 243, 493
BspANI	GGCC	3 cut(s)	222, 303, 558
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	2 cut(s)	478, 591
BspFNI	CGCG	2 cut(s)	114, 243
BspLI	GGNNCC	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	577
BsrBI	CCGCTC	1 cut(s)	493
BssECI	CCNNGG	3 cut(s)	90, 112, 241
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	217, 513
BstAFI	CTTAAG	1 cut(s)	577
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	112, 315, 422
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	3 cut(s)	90, 112, 241
BstF5I	GGATG	5 cut(s)	28, 86, 134, 391, 616
BstFNI	CGCG	2 cut(s)	114, 243
BstMAI	GTCTC	1 cut(s)	341
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	13
BstSNI	TACGTA	1 cut(s)	508
BstUI	CGCG	2 cut(s)	114, 243
Bsu15I	ATCGAT	2 cut(s)	478, 591
BsuRI	GGCC	3 cut(s)	222, 303, 558
BsuTUI	ATCGAT	2 cut(s)	478, 591
BtgI	CCRYGG	3 cut(s)	90, 112, 241
BtsCI	GGATG	5 cut(s)	28, 86, 134, 391, 616
BtsIMutI	CAGTG	1 cut(s)	518
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	112, 315, 422
Cfr13I	GGNCC	1 cut(s)	231
Cfr42I	CCGCGG	2 cut(s)	115, 244
ClaI	ATCGAT	2 cut(s)	478, 591
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	2 cut(s)	91, 305
CviJI	RGCY	9 cut(s)	18, 83, 222, 303, 317, 420, 499, 545, 558
CviKI_1	RGCY	9 cut(s)	18, 83, 222, 303, 317, 420, 499, 545, 558
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	301
Eco105I	TACGTA	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	2 cut(s)	94, 308
FaiI	YATR	8 cut(s)	92, 152, 276, 306, 401, 487, 489, 573
FatI	CATG	2 cut(s)	90, 304
FauI	CCCGC	4 cut(s)	119, 133, 248, 486
FauNDI	CATATG	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	4 cut(s)	15, 73, 121, 398
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	222, 303, 558
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	94, 308
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	1 cut(s)	72
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	13, 76
Hpy188I	TCNGA	5 cut(s)	48, 71, 185, 346, 378
Hpy188III	TCNNGA	2 cut(s)	264, 536
Hpy8I	GTNNAC	2 cut(s)	13, 76
HpyCH4III	ACNGT	2 cut(s)	217, 513
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	3 cut(s)	36, 42, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	2 cut(s)	94, 308
KspI	CCGCGG	2 cut(s)	115, 244
LpnPI	CCDG	6 cut(s)	214, 241, 267, 299, 309, 504
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	440, 598
MbiI	CCGCTC	1 cut(s)	493
MboII	GAAGA	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	7 cut(s)	23, 64, 207, 267, 340, 359, 431
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	149, 156, 233, 244, 264, 577
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	2 cut(s)	114, 243
MspCI	CTTAAG	1 cut(s)	577
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	114, 243
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	487
NlaIII	CATG	2 cut(s)	94, 308
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	598
PaqCI	CACCTGC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
SacII	CCGCGG	2 cut(s)	115, 244
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	85, 190, 286, 422, 510, 547
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	13
Sfr303I	CCGCGG	2 cut(s)	115, 244
SgrBI	CCGCGG	2 cut(s)	115, 244
SinI	GGWCC	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	262, 577
SmoI	CTYRAG	2 cut(s)	262, 577
SnaBI	TACGTA	1 cut(s)	508
Sse9I	AATT	7 cut(s)	23, 64, 207, 267, 340, 359, 431
SsiI	CCGC	8 cut(s)	95, 108, 112, 114, 126, 241, 243, 493
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	217, 513
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	478, 591
TasI	AATT	7 cut(s)	23, 64, 207, 267, 340, 359, 431
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	598
TspGWI	ACGGA	2 cut(s)	365, 398
TspRI	CASTG	1 cut(s)	518
Van91I	CCANNNNNTGG	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	4 cut(s)	64, 207, 267, 431
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.