Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015355

Physical Location & Seq

Genomic Coordinates Forward (+)

3548515 .. 3549793

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1049900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGGCGACACCAACCGCCTGCGGTTTCTCCCCCGCCATTCCATCCCTCTTGCCTCTCATAACTAACCCTAACAAAACCATTTCCTTTTTCCGACCGTTTTCTGCTTCCCAGAAAAACCCTACCGTCGGCCTCTCCTGGTCCTCAACCCACGGACGAAGAAACCCTCTCTGCTCAAGAATTTCCCATACGGCAGGTGTAGCACCAAAGAGGGGCTATGTGGTGCTGGCTGTTTCTGGGTTGATGAGTGGCAATTCTGAGACGGACGCAGAATGGGAACCCAATAATCCGAATACGGATGCTACGATTGACATACAACTTCCAAGAAGAAGCTTGCTTGTGAAATTTACTTGTAATTTGTGTGGTGAAAGGACAAATAGACTCGTCAATCGATTGGCTTATGAGCGGGGGCTTATTTACGTACAGTGTGCAGGGTGTCAAAAGTATCACAAGTTAGTTGATAATCTTGGCCTTGTGGTTGAGTATGACTTAAGGGAGGATTTTGATGTGGATACAAATGCGGATGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

178

Amino Acids

19.46

Weight (kDa)

7.6

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	114 - 161	7.6e-15	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68730
fragaria_vesca	FvH4_4g28420
malus_domestica	MD13G1049900.v1.1 MD16G1050900.v1.1
prunus_persica	Prupe.1G301800_v2.0.a1
pyrus_communis	pycom16g04460
rosa_chinensis	RchiOBHm_Chr4g0436371
rosa_laevigata	RLG00000006524
rosa_multiflora	Rmu_sc0007205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377540
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347600 Rh4BG356400 Rh4CG371000 Rh4DG350100
rosa_wichuraiana	Rw4G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	406
AciI	CCGC	6 cut(s)	5, 18, 24, 36, 406, 521
AcsI	RAATTY	2 cut(s)	180, 344
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	128, 212
AflII	CTTAAG	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	2 cut(s)	130, 469
ApoI	RAATTY	2 cut(s)	180, 344
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	141
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	254
BfrI	CTTAAG	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 212
BseBI	CCWGG	1 cut(s)	139
BseCI	ATCGAT	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	44, 304, 529
BseLI	CCNNNNNNNGG	2 cut(s)	128, 212
BseMII	CTCAG	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	132, 471
BshVI	ATCGAT	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	128, 212
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	132, 471
BspACI	CCGC	6 cut(s)	5, 18, 24, 36, 406, 521
BspANI	GGCC	2 cut(s)	132, 471
BspCNI	CTCAG	1 cut(s)	250
BspDI	ATCGAT	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	490
BsrBI	CCGCTC	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	99, 127, 426
BstAFI	CTTAAG	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	22, 228, 335
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	44, 304, 529
BstMAI	GTCTC	1 cut(s)	254
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSNI	TACGTA	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	132, 471
BsuTUI	ATCGAT	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	44, 304, 529
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	3 cut(s)	22, 228, 335
Cfr13I	GGNCC	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	391
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	422
CviJI	RGCY	7 cut(s)	132, 216, 230, 333, 398, 412, 471
CviKI_1	RGCY	7 cut(s)	132, 216, 230, 333, 398, 412, 471
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	258
Eco105I	TACGTA	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	254
FaiI	YATR	6 cut(s)	62, 189, 219, 314, 402, 486
FauI	CCCGC	2 cut(s)	43, 399
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	31, 311
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	132, 471
HgaI	GACGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	1 cut(s)	381
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	3 cut(s)	95, 259, 291
Hpy188III	TCNNGA	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	3 cut(s)	99, 127, 426
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	420
LpnPI	CCDG	8 cut(s)	34, 124, 125, 151, 180, 212, 222, 417
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	1 cut(s)	420
MbiI	CCGCTC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	171, 339
MluCI	AATT	4 cut(s)	180, 253, 344, 355
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	7 cut(s)	59, 66, 143, 154, 177, 204, 490
MseI	TTAA	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	279
PaqCI	CACCTGC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	141
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	3 cut(s)	199, 335, 423
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	175, 490
SmoI	CTYRAG	2 cut(s)	175, 490
SnaBI	TACGTA	1 cut(s)	421
Sse9I	AATT	4 cut(s)	180, 253, 344, 355
SsiI	CCGC	6 cut(s)	5, 18, 24, 36, 406, 521
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	99, 127, 426
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	391
TasI	AATT	4 cut(s)	180, 253, 344, 355
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	1 cut(s)	431
TspGWI	ACGGA	3 cut(s)	168, 278, 311
TspRI	CASTG	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	2 cut(s)	180, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.