Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016044

Physical Location & Seq

Genomic Coordinates Reverse (-)

26805651 .. 26807183

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGTCTTCTCTCGATTCTTCAGAGTCACCGGAGTGAATCTCTCTCGACGTGTGTACTCTCGAATCTCTTCGTCTTCGTCACCGAGTCTCGAATCGATTCCATGGATTCATAAAGCTTCAAACTTTACACTTTACGGATCATTTCACGCTTCTTCTGTTGAAACCCAAGTTTCTGCTAATGATGCTTCACAAGACGCAGAGAGAATCTGCAAGATTCTCACCAAATTCACGGATTCAAAGGTTGAAACTTTGCTGAACGAAGCTTCTGTTAAACTTTCACCAGCCTTAATCGAAGAAGTACTGAAGAAGCTAAGCAACGCTGGTGTTTTAGCTTTGTCTGTATTCAAATGGGCAGAGAATCAAAAGGGTTTCAAGCACACTACTTCAAACTACAACGCATTGATCGAATCATTAGGTAAGATCAAACAATTCAAACTCATTTGGAGTTTAGTAGACGACATGAAAGCAAAAAAGCTTTTGAGCAAAGAGACATTTGCTCTTATCTCTAGACGTTACGCTAGAGCTAGGAAAGTTAAAGAAGCTATAGGTGCGTTTCATAAGATGGAAGAGTTTGGGTTTAAGATGGAATCAAGTGATTTTAATCGTATGCTTGATACTTTGAGCAAATCTAGAAATGTTGGGGATGCACAGAAGGTGTTCGATAAAATGAAAAAGAAAAGGTTTGAGCCTGATATTAAGTCTTATACTATTCTACTTGAAGGTTGGGGTCAGGAGTTGAATCTTTTGAGAGTTGATGAGGTTAACAGAGAGATGAAAGACGAAGGTTTTGAACCGGATGTTGTCGCTTACGGTATTATTATCAATGCGCATTGCAAGGCGAAGAAGTATGAAGAAGCTATTAGATTCTTCAATGAGATGGAACAGAGGAATTGTAAGCCAAGTCCTCACATTTTCTGTAGTTTGATTAATGGACTTGGCTCTGAGAAGAAGTTGAATGATGCTCTTGAGTTCTTTGAGAGATCAAAGAGTTCCGGGTTTCCTCTTGAAGCACCTACTTACAATGCGCTAGTAGGTGCTTATTGCTGGTCACAGCGAATGGAAGACGCATACAAAACCGTTGATGAGATGAGATTAAAAGGGGTTGGGCCAAATGCTAGAACTTATGATATAATTCTTCATCATTTGATTAGAATGCAGCGCTCGAAAGAAGCGTATGAAGTTTATCAGACGATGAGTTGTGAACCGACGGTGAGTACTTACGAGATCATGGTGAGGATGTTTTGTAACAAAGAGAGATTGGATATGGCGATCAAGATTTGGGACGAGATGAAAGGGAAAGGTGTTCTTCCAGGAATGCACATGTTCTCAAGTTTGATCACAGCTCTGTGCCATGAGAACAAATTAGACGAGGCTTGTGAGTATTTCAATGAGATGTTGGATGTGGGTATTAGGCCACCGGGACATATGTTTAGCCGTCTTAAACAAACACTTCTCGATGAAGGCCGGAAAGATAAAGTCACGGATTTGGTTGTAAAGATGGATAGGCTGAGGAAAACCCAACTTGTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

510

Amino Acids

58.52

Weight (kDa)

9.04

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	173 - 292	3.4e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	185 - 243	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	200 - 241	4.8e-10	PPR repeat family
PPR_3	PF13812	254 - 313	1.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	262 - 294	1.6e-10	PPR repeat
PPR_2	PF13041	265 - 312	7e-15	PPR repeat family
PPR	PF01535	268 - 298	1.5e-07	PPR repeat
PPR_long	PF17177	274 - 400	2e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	339 - 382	1.2e-11	PPR repeat family
PPR_2	PF13041	374 - 416	1.3e-06	PPR repeat family
PPR_1	PF12854	399 - 431	9.4e-08	PPR repeat
PPR_long	PF17177	401 - 499	1.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	402 - 451	7.5e-11	PPR repeat family
PPR_1	PF12854	433 - 465	3.2e-06	PPR repeat
PPR	PF01535	441 - 470	3.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71060
fragaria_vesca	FvH4_4g32230
malus_domestica	MD13G1027000.v1.1 MD16G1030100.v1.1
prunus_persica	Prupe.1G322900_v2.0.a1
pyrus_communis	pycom13g02570
rosa_chinensis	RchiOBHm_Chr4g0440971
rosa_laevigata	RLG00000006135
rosa_multiflora	Rmu_sc0000424.1_g000028
rosa_roxburghii	Rroxscaffold_5G00381830
rosa_rugosa	Rorug04G0329800
rosa_samantha	Rh4BG394900 Rh4CG409800 Rh4DG388100
rosa_wichuraiana	Rw4G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	4, 323
AfaI	GTAC	3 cut(s)	56, 300, 1216
AfeI	AGCGCT	1 cut(s)	1160
AflIII	ACRYGT	2 cut(s)	49, 1320
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	1309
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	9 cut(s)	116, 263, 310, 332, 475, 524, 542, 857, 1343
AluI	AGCT	9 cut(s)	116, 263, 310, 332, 475, 524, 542, 857, 1343
Alw26I	GTCTC	2 cut(s)	92, 482
AlwI	GGATC	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	1160
AoxI	GGCC	3 cut(s)	1106, 1412, 1462
ApeKI	GCWGC	1 cut(s)	1156
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
AseI	ATTAAT	1 cut(s)	927
Asp700I	GAANNNNTTC	3 cut(s)	67, 96, 656
AspLEI	GCGC	3 cut(s)	829, 1027, 1161
AspS9I	GGNCC	1 cut(s)	1106
AsuC2I	CCSGG	2 cut(s)	994, 1419
AsuHPI	GGTGA	6 cut(s)	19, 72, 211, 270, 1222, 1243
BbsI	GAAGAC	2 cut(s)	66, 1068
BbvCI	CCTCAGC	1 cut(s)	1508
BbvI	GCAGC	1 cut(s)	1168
BccI	CCATC	4 cut(s)	556, 577, 871, 1492
BceAI	ACGGC	1 cut(s)	1419
BciT130I	CCWGG	1 cut(s)	1311
BclI	TGATCA	1 cut(s)	1335
BcnI	CCSGG	2 cut(s)	994, 1419
BcoDI	GTCTC	2 cut(s)	92, 482
BfaI	CTAG	6 cut(s)	507, 519, 525, 630, 1028, 1116
BfmI	CTRYAG	2 cut(s)	543, 916
BfoI	RGCGCY	1 cut(s)	1162
BisI	GCNGC	1 cut(s)	1157
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	1158
BmcAI	AGTACT	2 cut(s)	300, 1216
Bme1390I	CCNGG	3 cut(s)	994, 1311, 1419
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	1106
BmrFI	CCNGG	3 cut(s)	994, 1311, 1419
BmsI	GCATC	3 cut(s)	172, 634, 949
BpiI	GAAGAC	2 cut(s)	66, 1068
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
Bpu10I	CCTNAGC	1 cut(s)	1508
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	2 cut(s)	986, 1312
BpuMI	CCSGG	2 cut(s)	994, 1419
Bsa29I	ATCGAT	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	2 cut(s)	29, 793
Bse3DI	GCAATG	1 cut(s)	829
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	1311
BseCI	ATCGAT	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	4 cut(s)	649, 802, 1242, 1405
BseJI	GATNNNNATC	1 cut(s)	600
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	2 cut(s)	933, 1499
BseXI	GCAGC	1 cut(s)	1168
BshFI	GGCC	3 cut(s)	1108, 1414, 1464
BshVI	ATCGAT	1 cut(s)	95
BsiSI	CCGG	5 cut(s)	30, 794, 993, 1418, 1465
BslFI	GGGAC	2 cut(s)	1295, 1434
BsmAI	GTCTC	2 cut(s)	92, 482
BsmFI	GGGAC	2 cut(s)	1295, 1434
BsmI	GAATGC	2 cut(s)	1158, 1320
BsnI	GGCC	3 cut(s)	1108, 1414, 1464
Bsp143I	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
Bsp1720I	GCTNAGC	1 cut(s)	311
Bsp19I	CCATGG	1 cut(s)	101
BspANI	GGCC	3 cut(s)	1108, 1414, 1464
BspCNI	CTCAG	2 cut(s)	934, 1500
BspDI	ATCGAT	1 cut(s)	95
BspPI	GGATC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	829
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
BssT1I	CCWWGG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	1311
Bst4CI	ACNGT	3 cut(s)	812, 1078, 1210
Bst6I	CTCTTC	2 cut(s)	73, 561
BstDEI	CTNAG	3 cut(s)	311, 942, 1508
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	4 cut(s)	649, 802, 1242, 1405
BstH2I	RGCGCY	1 cut(s)	1162
BstHHI	GCGC	3 cut(s)	829, 1027, 1161
BstKTI	GATC	7 cut(s)	140, 405, 423, 983, 1227, 1272, 1338
BstMAI	GTCTC	2 cut(s)	92, 482
BstMBI	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 548
BstNI	CCWGG	1 cut(s)	1311
BstNSI	RCATGY	1 cut(s)	1324
BstSCI	CCNGG	3 cut(s)	992, 1309, 1417
BstSFI	CTRYAG	2 cut(s)	543, 916
BstV1I	GCAGC	1 cut(s)	1168
BstV2I	GAAGAC	2 cut(s)	66, 1068
BstXI	CCANNNNNNTGG	1 cut(s)	1526
Bsu15I	ATCGAT	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	1108, 1414, 1464
BsuTUI	ATCGAT	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	4 cut(s)	649, 802, 1242, 1405
CfoI	GCGC	3 cut(s)	829, 1027, 1161
Cfr13I	GGNCC	1 cut(s)	1106
ClaI	ATCGAT	1 cut(s)	95
CseI	GACGC	2 cut(s)	203, 1073
Csp6I	GTAC	3 cut(s)	55, 299, 1215
CviAII	CATG	5 cut(s)	102, 460, 1228, 1321, 1352
CviQI	GTAC	3 cut(s)	55, 299, 1215
DdeI	CTNAG	3 cut(s)	311, 942, 1508
DpnI	GATC	7 cut(s)	139, 404, 422, 982, 1226, 1271, 1337
DpnII	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
Eam1104I	CTCTTC	2 cut(s)	73, 561
EarI	CTCTTC	2 cut(s)	73, 561
Eco130I	CCWWGG	1 cut(s)	101
Eco47III	AGCGCT	1 cut(s)	1160
Eco57I	CTGAAG	2 cut(s)	4, 323
EcoRII	CCWGG	1 cut(s)	1309
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	5 cut(s)	105, 463, 1231, 1324, 1355
FalI	AAGNNNNNCTT	2 cut(s)	1290, 1322
FaqI	GGGAC	2 cut(s)	1295, 1434
FatI	CATG	5 cut(s)	101, 459, 1227, 1320, 1351
FauNDI	CATATG	1 cut(s)	1425
FbaI	TGATCA	1 cut(s)	1335
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	1157
FokI	GGATG	4 cut(s)	656, 809, 1249, 1412
Fsp4HI	GCNGC	1 cut(s)	1157
FspAI	RTGCGCAY	1 cut(s)	828
FspBI	CTAG	6 cut(s)	507, 519, 525, 630, 1028, 1116
FspI	TGCGCA	1 cut(s)	828
GlaI	GCGC	3 cut(s)	828, 1026, 1160
GluI	GCNGC	1 cut(s)	1157
HaeII	RGCGCY	1 cut(s)	1162
HaeIII	GGCC	3 cut(s)	1108, 1414, 1464
HapII	CCGG	5 cut(s)	30, 794, 993, 1418, 1465
HgaI	GACGC	2 cut(s)	203, 1073
HhaI	GCGC	3 cut(s)	829, 1027, 1161
Hin1II	CATG	5 cut(s)	105, 463, 1231, 1324, 1355
Hin6I	GCGC	3 cut(s)	827, 1025, 1159
HinP1I	GCGC	3 cut(s)	827, 1025, 1159
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	3 cut(s)	114, 261, 473
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	5 cut(s)	30, 794, 993, 1418, 1465
HphI	GGTGA	6 cut(s)	19, 72, 211, 270, 1222, 1243
Hpy166II	GTNNAC	4 cut(s)	55, 454, 763, 1202
Hpy188I	TCNGA	3 cut(s)	23, 943, 1188
Hpy8I	GTNNAC	4 cut(s)	55, 454, 763, 1202
Hpy99I	CGWCG	2 cut(s)	51, 1210
HpyAV	CCTTC	4 cut(s)	646, 713, 776, 1454
HpyCH4III	ACNGT	3 cut(s)	812, 1078, 1210
HpyCH4IV	ACGT	2 cut(s)	49, 511
HpyCH4V	TGCA	5 cut(s)	210, 647, 834, 1156, 1318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 548
HpyF3I	CTNAG	3 cut(s)	311, 942, 1508
HpySE526I	ACGT	2 cut(s)	49, 511
Hsp92II	CATG	5 cut(s)	105, 463, 1231, 1324, 1355
HspAI	GCGC	3 cut(s)	827, 1025, 1159
Ksp22I	TGATCA	1 cut(s)	1335
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
Lsp1109I	GCAGC	1 cut(s)	1168
LweI	GCATC	3 cut(s)	172, 634, 949
MaeI	CTAG	6 cut(s)	507, 519, 525, 630, 1028, 1116
MaeII	ACGT	2 cut(s)	49, 511
MaeIII	GTNAC	6 cut(s)	25, 78, 512, 1047, 1244, 1477
MalI	GATC	7 cut(s)	139, 404, 422, 982, 1226, 1271, 1337
MboI	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
MluCI	AATT	5 cut(s)	224, 428, 889, 1131, 1361
MlyI	GAGTC	2 cut(s)	33, 94
MmeI	TCCRAC	1 cut(s)	1377
MnlI	CCTC	7 cut(s)	751, 879, 915, 1011, 1227, 1363, 1503
MroXI	GAANNNNTTC	3 cut(s)	67, 96, 656
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	5 cut(s)	30, 794, 993, 1418, 1465
MspR9I	CCNGG	3 cut(s)	994, 1311, 1419
Mva1269I	GAATGC	2 cut(s)	1158, 1320
MvaI	CCWGG	1 cut(s)	1311
MwoI	GCNNNNNNNGC	2 cut(s)	182, 548
NciI	CCSGG	2 cut(s)	994, 1419
NcoI	CCATGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	1425
NdeII	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
NlaIII	CATG	5 cut(s)	105, 463, 1231, 1324, 1355
NmuCI	GTSAC	4 cut(s)	25, 78, 1047, 1477
NsbI	TGCGCA	1 cut(s)	828
NspI	RCATGY	1 cut(s)	1324
OliI	CACNNNNGTG	1 cut(s)	32
PciI	ACATGT	1 cut(s)	1320
PcsI	WCGNNNNNNNCGW	2 cut(s)	402, 1169
PctI	GAATGC	2 cut(s)	1158, 1320
PdmI	GAANNNNTTC	3 cut(s)	67, 96, 656
PfoI	TCCNGGA	1 cut(s)	1309
PkrI	GCNGC	1 cut(s)	1158
PleI	GAGTC	2 cut(s)	32, 93
PpsI	GAGTC	2 cut(s)	32, 93
PscI	ACATGT	1 cut(s)	1320
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	1309
PspGI	CCWGG	1 cut(s)	1309
PspPI	GGNCC	1 cut(s)	1106
RsaI	GTAC	3 cut(s)	56, 300, 1216
RsaNI	GTAC	3 cut(s)	55, 299, 1215
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	1 cut(s)	1157
Sau3AI	GATC	7 cut(s)	137, 402, 420, 980, 1224, 1269, 1335
Sau96I	GGNCC	1 cut(s)	1106
ScaI	AGTACT	2 cut(s)	300, 1216
SchI	GAGTC	2 cut(s)	33, 94
ScrFI	CCNGG	3 cut(s)	994, 1311, 1419
SfaNI	GCATC	3 cut(s)	172, 634, 949
SfcI	CTRYAG	2 cut(s)	543, 916
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	965, 1327
SmoI	CTYRAG	2 cut(s)	965, 1327
Sse9I	AATT	5 cut(s)	224, 428, 889, 1131, 1361
SspMI	CTAG	6 cut(s)	507, 519, 525, 630, 1028, 1116
StyD4I	CCNGG	3 cut(s)	992, 1309, 1417
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	3 cut(s)	812, 1078, 1210
TaiI	ACGT	2 cut(s)	52, 514
TasI	AATT	5 cut(s)	224, 428, 889, 1131, 1361
TatI	WGTACW	3 cut(s)	54, 298, 1214
TseFI	GTSAC	4 cut(s)	25, 78, 1047, 1477
TseI	GCWGC	1 cut(s)	1156
Tsp45I	GTSAC	4 cut(s)	25, 78, 1047, 1477
TspGWI	ACGGA	3 cut(s)	150, 245, 1496
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	1 cut(s)	224
XbaI	TCTAGA	2 cut(s)	506, 629
XceI	RCATGY	1 cut(s)	1324
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	3 cut(s)	67, 96, 656
XspI	CTAG	6 cut(s)	507, 519, 525, 630, 1028, 1116
ZrmI	AGTACT	2 cut(s)	300, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.