Rorug04G0329800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016044
Physical Location & Seq
Reverse (-)
50452047 .. 50454528
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0329800.1

Sequence Viewer

Length: 1509 bp
ATGGATCTCTTGAGTTGTATGATATGCCTTTGTTTTGCCTGGACCACCATCCAAGCCTTGTATTTCTTTGCAAGAAGAGGCAAAGAAATTTCAAGAACTAGGCTTCCTCCAGGACCAAAGCCATTTCCATTGATTGGGAATCTGTTTGAGCTTGGAGACAAACCACATGTCTCTCTTACCAAGCTTTCCCAACGCTATGGCCCCATTAATAGTTTGCAACTAGGCCAATTAACCACTGTTGTAGTTTCTTCGCCAACTCTAGCCAAAGAAATCCTCCGAATTCATGACCAAGTCTTCTGCAACCGAACCCTTCCAGATGCAATCCACGCCTGCAAGCACGCCGACTACAGTTTGGCGTGGCTTCCTGTATCAGCAAGATGGAGGAATCTTCGCACAATATTCAACTTGCAATTGTTAGGCCCCAAAGTTCTTGATGCCAACCACGCCAACCGGCGCGTAAAGGTGCAAAAGCTCATGGATGATGTCAATGAAAGCATAAGGGCCGGTGAGGCAGTAGATGTCGGAAGGGCTGCTTTTACAACCGCACTCAATTTGTTGTCGCAGACTGTCTTCTCTGTGGATTTAGCTGACCCGAGTTGCCAGACAGCTAGGGAGTTCAAGGAGACTTTTTGGGGTCTGATGGAAGAGGTAGGGAAACCAAACTTGGTGGACTATTTTCCTTTGCTAAGGAAGCTTGACCCACAAGGCATAAACCAGCGCGCAACGAACTACTTCCGGAAGACGATACTCATCTTTGATCGAATGATCCATCAAAGGTTGGAATCAAGAAAAGGGGGCAATTATATCACAACTAATGATATGTTGGATACACTTTTAAACATCAGTGAAGTGAAAAGAGAGGATATGGATATTCCGGAAACCCAACATTTGTTTGTGGACCTGTTTGTTGCTGGCACAGAGACAACTTCAGCCACAGTGGAATGGGCAATGGCTGAGCTATTATGCAACCCAGAAGTCCTCTCCAAAGCTCAAGCGGAACTCAATCAAGTGATTGGAAAAGGCAAGCTAGTTGAGGAATCAGACATTGTTCGACTCCCTTACTTACAAGCAATAATCAAAGAAACATTTCGGCTTCACCCAGTATTTCCATTTCTACTCCCCCGAAAAGCAGGAGCTAACACAGAAATTGGAGGGTATGTAATCCCGAAGGATGCACAAGTTCTAATCAATGTTTGGGCCATAGGCAGAGACCCCCTTACTTGGGAAAACCCAAACTTGTTTAAGCCAGAGAGGTTCTTGGGATTAGACAACCAAATTGATGTTACGGGAAAAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGAAGAATATGTCCTGGACTACCACTGGCAATAAGAATGTTACACTTGATGTTGGGTTCACTACTTAACAACTTTGACTGGAAGCTTGAAAATGGAGTCTTCCCCGATACTACGAACATGGAAGAGAAGTTTGGCCTCACCTTACAAAAGGCTCAGCCTCTCAGAGCTGTGCCCAAGAAGTCATAG

Protein Analysis

502

Amino Acids

56.7

Weight (kDa)

8.65

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 490 1.4e-101 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71060
fragaria_vesca FvH4_4g32230
malus_domestica MD13G1027000.v1.1 MD16G1030100.v1.1
prunus_persica Prupe.1G322900_v2.0.a1
pyrus_communis pycom13g02570
rosa_chinensis RchiOBHm_Chr4g0440971
rosa_laevigata RLG00000006135
rosa_multiflora Rmu_sc0000424.1_g000028
rosa_roxburghii Rroxscaffold_5G00381830
rosa_rugosa Rorug04G0329800
rosa_samantha Rh4BG394900 Rh4CG409800 Rh4DG388100
rosa_wichuraiana Rw4G032870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 134, 1316
AccII CGCG 2 cut(s) 456, 720
AccIII TCCGGA 2 cut(s) 735, 874
AciI CCGC 2 cut(s) 543, 995
AclWI GGATC 2 cut(s) 12, 760
AcsI RAATTY 2 cut(s) 87, 279
AcuI CTGAAG 1 cut(s) 912
AfiI CCNNNNNNNGG 4 cut(s) 134, 1221, 1222, 1316
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 4 cut(s) 93, 403, 619, 1412
AjnI CCWGG 3 cut(s) 38, 109, 1336
AjuI GAANNNNNNNTTGG 4 cut(s) 647, 679, 1437, 1469
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
Alw26I GTCTC 5 cut(s) 150, 175, 617, 914, 1203
AlwI GGATC 2 cut(s) 12, 760
Ama87I CYCGRG 1 cut(s) 592
Aor13HI TCCGGA 2 cut(s) 735, 874
AoxI GGCC 6 cut(s) 199, 223, 418, 501, 1197, 1456
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 2 cut(s) 87, 279
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 2 cut(s) 731, 1086
AspLEI GCGC 3 cut(s) 456, 720, 722
AspS9I GGNCC 7 cut(s) 42, 113, 200, 419, 501, 898, 1197
AsuHPI GGTGA 3 cut(s) 518, 1088, 1453
AvaI CYCGRG 1 cut(s) 592
AvaII GGWCC 3 cut(s) 42, 113, 898
BaeGI GKGCMC 1 cut(s) 1497
BbsI GAAGAC 4 cut(s) 286, 562, 746, 1414
BbvI GCAGC 1 cut(s) 517
BccI CCATC 4 cut(s) 56, 372, 634, 777
BciT130I CCWGG 3 cut(s) 40, 111, 1338
BciVI GTATCC 1 cut(s) 820
BcoDI GTCTC 5 cut(s) 150, 175, 617, 914, 1203
BfaI CTAG 5 cut(s) 99, 221, 260, 609, 1028
BfmI CTRYAG 1 cut(s) 346
BfuI GTATCC 1 cut(s) 820
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 1 cut(s) 531
BlpI GCTNAGC 2 cut(s) 954, 1476
BlsI GCNGC 1 cut(s) 532
Bme1390I CCNGG 3 cut(s) 40, 111, 1338
Bme18I GGWCC 3 cut(s) 42, 113, 898
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 7 cut(s) 42, 113, 200, 419, 501, 898, 1197
BmiI GGNNCC 2 cut(s) 202, 421
BmrFI CCNGG 3 cut(s) 40, 111, 1338
BmrI ACTGGG 1 cut(s) 1094
BmsI GCATC 3 cut(s) 307, 424, 1162
BmuI ACTGGG 1 cut(s) 1094
BpiI GAAGAC 4 cut(s) 286, 562, 746, 1414
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 686
Bpu1102I GCTNAGC 2 cut(s) 954, 1476
BpuEI CTTGAG 2 cut(s) 31, 975
BsaBI GATNNNNATC 1 cut(s) 749
BsaI GGTCTC 1 cut(s) 1203
BsaWI WCCGGW 2 cut(s) 735, 874
BsaXI ACNNNNNCTCC 2 cut(s) 1143, 1173
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 1221, 1222, 1316
Bse118I RCCGGY 2 cut(s) 450, 503
Bse1I ACTGG 3 cut(s) 1100, 1353, 1406
Bse3DI GCAATG 1 cut(s) 954
Bse8I GATNNNNATC 1 cut(s) 749
BseAI TCCGGA 2 cut(s) 735, 874
BseBI CCWGG 3 cut(s) 40, 111, 1338
BseGI GGATG 3 cut(s) 48, 484, 1177
BseJI GATNNNNATC 1 cut(s) 749
BseLI CCNNNNNNNGG 4 cut(s) 134, 1221, 1222, 1316
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 3 cut(s) 945, 1490, 1498
BseNI ACTGG 3 cut(s) 1100, 1353, 1406
BsePI GCGCGC 1 cut(s) 718
BseSI GKGCMC 1 cut(s) 1497
BseXI GCAGC 1 cut(s) 517
Bsh1236I CGCG 2 cut(s) 456, 720
BshFI GGCC 6 cut(s) 201, 225, 420, 503, 1199, 1458
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 4 cut(s) 451, 504, 736, 875
BslI CCNNNNNNNGG 4 cut(s) 134, 1221, 1222, 1316
BsmAI GTCTC 5 cut(s) 150, 175, 617, 914, 1203
BsnI GGCC 6 cut(s) 201, 225, 420, 503, 1199, 1458
Bso31I GGTCTC 1 cut(s) 1203
BsoBI CYCGRG 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 1497
Bsp13I TCCGGA 2 cut(s) 735, 874
Bsp143I GATC 3 cut(s) 4, 757, 765
Bsp1720I GCTNAGC 2 cut(s) 954, 1476
BspACI CCGC 2 cut(s) 543, 995
BspANI GGCC 6 cut(s) 201, 225, 420, 503, 1199, 1458
BspCNI CTCAG 3 cut(s) 946, 1489, 1497
BspEI TCCGGA 2 cut(s) 735, 874
BspFNI CGCG 2 cut(s) 456, 720
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 202, 421
BspPI GGATC 2 cut(s) 12, 760
BspTNI GGTCTC 1 cut(s) 1203
BsrDI GCAATG 1 cut(s) 954
BsrFI RCCGGY 2 cut(s) 450, 503
BsrI ACTGG 3 cut(s) 1100, 1353, 1406
BssAI RCCGGY 2 cut(s) 450, 503
BssHII GCGCGC 1 cut(s) 718
BssMI GATC 3 cut(s) 4, 757, 765
Bst2UI CCWGG 3 cut(s) 40, 111, 1338
Bst4CI ACNGT 4 cut(s) 238, 350, 568, 937
Bst6I CTCTTC 3 cut(s) 70, 639, 1440
BstC8I GCNNGC 6 cut(s) 331, 335, 339, 720, 913, 1025
BstDEI CTNAG 4 cut(s) 686, 954, 1476, 1484
BstF5I GGATG 3 cut(s) 48, 484, 1177
BstFNI CGCG 2 cut(s) 456, 720
BstHHI GCGC 3 cut(s) 456, 720, 722
BstKTI GATC 3 cut(s) 7, 760, 768
BstMAI GTCTC 5 cut(s) 150, 175, 617, 914, 1203
BstMBI GATC 3 cut(s) 4, 757, 765
BstMWI GCNNNNNNNGC 4 cut(s) 326, 443, 509, 691
BstNI CCWGG 3 cut(s) 40, 111, 1338
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 38, 109, 1336
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 1497
BstUI CGCG 2 cut(s) 456, 720
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 4 cut(s) 286, 562, 746, 1414
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 6 cut(s) 201, 225, 420, 503, 1199, 1458
BtsCI GGATG 3 cut(s) 48, 484, 1177
BtsIMutI CAGTG 4 cut(s) 234, 850, 942, 1346
Cac8I GCNNGC 6 cut(s) 331, 335, 339, 720, 913, 1025
CciI TCATGA 1 cut(s) 283
CfoI GCGC 3 cut(s) 456, 720, 722
Cfr10I RCCGGY 2 cut(s) 450, 503
Cfr13I GGNCC 7 cut(s) 42, 113, 200, 419, 501, 898, 1197
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 4 cut(s) 167, 284, 475, 1441
DdeI CTNAG 4 cut(s) 686, 954, 1476, 1484
DpnI GATC 3 cut(s) 6, 759, 767
DpnII GATC 3 cut(s) 4, 757, 765
DraI TTTAAA 1 cut(s) 837
Eam1104I CTCTTC 3 cut(s) 70, 639, 1440
EarI CTCTTC 3 cut(s) 70, 639, 1440
Eco31I GGTCTC 1 cut(s) 1203
Eco47I GGWCC 3 cut(s) 42, 113, 898
Eco57I CTGAAG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 279
EcoRII CCWGG 3 cut(s) 38, 109, 1336
FaeI CATG 4 cut(s) 170, 287, 478, 1444
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FatI CATG 4 cut(s) 166, 283, 474, 1440
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 3 cut(s) 35, 491, 1184
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 5 cut(s) 99, 221, 260, 609, 1028
GlaI GCGC 3 cut(s) 455, 719, 721
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 6 cut(s) 201, 225, 420, 503, 1199, 1458
HapII CCGG 4 cut(s) 451, 504, 736, 875
HhaI GCGC 3 cut(s) 456, 720, 722
Hin1II CATG 4 cut(s) 170, 287, 478, 1444
Hin6I GCGC 3 cut(s) 454, 718, 720
HinP1I GCGC 3 cut(s) 454, 718, 720
HindIII AAGCTT 3 cut(s) 182, 692, 1406
HinfI GANTC 6 cut(s) 139, 385, 782, 1037, 1053, 1419
HpaII CCGG 4 cut(s) 451, 504, 736, 875
HphI GGTGA 3 cut(s) 518, 1088, 1453
Hpy166II GTNNAC 3 cut(s) 670, 898, 1382
Hpy188I TCNGA 5 cut(s) 278, 524, 639, 1042, 1487
Hpy188III TCNNGA 9 cut(s) 10, 93, 284, 314, 431, 736, 786, 875, 1165
Hpy8I GTNNAC 3 cut(s) 670, 898, 1382
HpyAV CCTTC 3 cut(s) 320, 519, 1162
HpyCH4III ACNGT 4 cut(s) 238, 350, 568, 937
HpyCH4V TGCA 9 cut(s) 71, 217, 300, 320, 333, 409, 466, 966, 1175
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 443, 509, 691
HpyF3I CTNAG 4 cut(s) 686, 954, 1476, 1484
Hsp92II CATG 4 cut(s) 170, 287, 478, 1444
HspAI GCGC 3 cut(s) 454, 718, 720
Kpn2I TCCGGA 2 cut(s) 735, 874
Kzo9I GATC 3 cut(s) 4, 757, 765
LmnI GCTCC 1 cut(s) 1133
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 3 cut(s) 307, 424, 1162
MaeI CTAG 5 cut(s) 99, 221, 260, 609, 1028
MaeIII GTNAC 2 cut(s) 1282, 1362
MalI GATC 3 cut(s) 6, 759, 767
MboI GATC 3 cut(s) 4, 757, 765
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 1497
MluCI AATT 8 cut(s) 87, 227, 279, 410, 550, 799, 1146, 1275
MlyI GAGTC 2 cut(s) 1047, 1428
MmeI TCCRAC 3 cut(s) 502, 759, 804
MroI TCCGGA 2 cut(s) 735, 874
MroXI GAANNNNTTC 2 cut(s) 731, 1086
MseI TTAA 5 cut(s) 207, 230, 836, 1242, 1389
MspI CCGG 4 cut(s) 451, 504, 736, 875
MspR9I CCNGG 3 cut(s) 40, 111, 1338
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 3 cut(s) 40, 111, 1338
MvnI CGCG 2 cut(s) 456, 720
MwoI GCNNNNNNNGC 4 cut(s) 326, 443, 509, 691
NdeII GATC 3 cut(s) 4, 757, 765
NlaIII CATG 4 cut(s) 170, 287, 478, 1444
NlaIV GGNNCC 2 cut(s) 202, 421
NspI RCATGY 1 cut(s) 170
PagI TCATGA 1 cut(s) 283
PauI GCGCGC 1 cut(s) 718
PciI ACATGT 1 cut(s) 166
PdmI GAANNNNTTC 2 cut(s) 731, 1086
PfeI GAWTC 4 cut(s) 139, 385, 782, 1037
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 2 cut(s) 134, 1316
PfoI TCCNGGA 2 cut(s) 109, 1336
PkrI GCNGC 1 cut(s) 532
PleI GAGTC 2 cut(s) 1047, 1427
PpsI GAGTC 2 cut(s) 1047, 1427
PscI ACATGT 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 207
Psp6I CCWGG 3 cut(s) 38, 109, 1336
PspGI CCWGG 3 cut(s) 38, 109, 1336
PspN4I GGNNCC 2 cut(s) 202, 421
PspPI GGNCC 7 cut(s) 42, 113, 200, 419, 501, 898, 1197
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 290
PteI GCGCGC 1 cut(s) 718
SaqAI TTAA 5 cut(s) 207, 230, 836, 1242, 1389
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 3 cut(s) 4, 757, 765
Sau96I GGNCC 7 cut(s) 42, 113, 200, 419, 501, 898, 1197
SchI GAGTC 2 cut(s) 1047, 1428
ScrFI CCNGG 3 cut(s) 40, 111, 1338
SduI GDGCHC 1 cut(s) 1497
SfaNI GCATC 3 cut(s) 307, 424, 1162
SfcI CTRYAG 1 cut(s) 346
SinI GGWCC 3 cut(s) 42, 113, 898
SmlI CTYRAG 2 cut(s) 10, 990
SmoI CTYRAG 2 cut(s) 10, 990
Sse9I AATT 8 cut(s) 87, 227, 279, 410, 550, 799, 1146, 1275
SsiI CCGC 2 cut(s) 543, 995
SspI AATATT 1 cut(s) 399
SspMI CTAG 5 cut(s) 99, 221, 260, 609, 1028
StyD4I CCNGG 3 cut(s) 38, 109, 1336
TaaI ACNGT 4 cut(s) 238, 350, 568, 937
TaqI TCGA 2 cut(s) 760, 1051
TasI AATT 8 cut(s) 87, 227, 279, 410, 550, 799, 1146, 1275
TfiI GAWTC 4 cut(s) 139, 385, 782, 1037
Tru1I TTAA 5 cut(s) 207, 230, 836, 1242, 1389
Tru9I TTAA 5 cut(s) 207, 230, 836, 1242, 1389
TscAI CASTG 4 cut(s) 241, 850, 942, 1353
TseI GCWGC 1 cut(s) 530
TspDTI ATGAA 2 cut(s) 272, 504
TspRI CASTG 4 cut(s) 241, 850, 942, 1353
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 2 cut(s) 134, 1316
VpaK11BI GGWCC 3 cut(s) 42, 113, 898
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 2 cut(s) 87, 279
XceI RCATGY 1 cut(s) 170
XmnI GAANNNNTTC 2 cut(s) 731, 1086
XspI CTAG 5 cut(s) 99, 221, 260, 609, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.