Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016044

Physical Location & Seq

Genomic Coordinates Reverse (-)

4700750 .. 4702363

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006135

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGGTCTCTCTAGATTTTTCAAGCTTTTACCAAAACCATCCAAAAATCCCTTCTTTCTTTTCCCAAATCCTCAAACTGGATCTCCCAGATCGGTAAGATCACTCACAAACCTTACTAGTAATCCAAAACCCGATGTTGAACACCCATCTGGGCTCACACGCAATCCCAATCCGGGTATTTACAGAGCAATCCATGGCACTCTATACAAAACCCAAGTGCTTGATGAGGCCAATACCCACGATATCACCCAAGAGGCTGAGAAACTCAGCAAAATTCTATCCACGGCCAACTCCAATCCTCGCATTGAGAGCTTGCTTGACGGCGCTTCAGTCAAGGTGTCACCAACGCTTGTCGTTGAGGTCTTGAAGAAGCTCAACAACGCCGGCGCTCTGGCGCTTTCGTTTTTCCGGTGGGCCGAAAAGCAAAAGGGGTTTAAGCATTGCACAGAGAGCTACAATGCTCTGATTGAAGCTCTGGGTAAGATCAAACAGTTCAAGATAATATGGGAATTGGTGAATGACATGAACAACAAAGGCTTGCTCAGCAAAGAGACTTTCGTTTTGATTTCGAGGCGGTATGCGAGGGCAAGGAAGGTTTCAGAGGCCATTAAAGCTTTTGAGAAGATGGAGAAGTTCGGAATCAAGTTAGAAGGGTCGGATTTCAATAGACTGATTGATACTCTGAGCAAGTCGAGGCAGGTTGAGAAAGCACAGGAGGTGTTCGATGAAATGAAGCACAGAAGGTTCAAACCTGATATTAAATCGTACACTATTTTGCTGGAAGGATGGGGTCAGCAACAGAGTTTTTTGAGGTTGGATGAGGTTTATAGAGAAATGAAGGCTGAAGGGTTCGATCCAGATGTTGTGACTTATGGTATTTTGATCAATGCACATTGTAAGGGGAAGAAGTATAACGAAGCGATTGGATTGGTTCGTGAGATGGAAGCGAAGAATGTTAGGCCTTCTCCTCATATCTTCTGTATGCTGATTAATGGGTTAGGTTCAGAGAAGAGGTTGGCTGAAGCTCTTGAGTTTTTTGAACAATATAAAGCCAGTGGTTTAGAACCAGAGGCACCTACTTATAATGCTGTTGTTGGAGCTTACTGCTGGTCTATGCGGATGCCTGACGCGTTTGGGGTGGTGGATGAGATGAGAAAATGTGGGATTGGTCCTAATTCTCGAACCTATGATATAATCTTGCATCACTTGGTAAAGCATCGAAGAACTGAACAAGCTTACTTGGTATTCCAGAAAATCAGTAGCGAGCCTGGCTGCGAACCAACAGTAAGTACATATGAAATCCTAGTGAGGATGTTTTGCAATGAGAATCGAGTGGATATGGCATTACAGGTTTGGGATGAGATGAAGACTAAAGGCGTCCTGCCAGGAATGCACATGTTCTCCACATTGATCAACAGCTTGTGCCATGAGAACAAGTTAGATAATGCGTGCAGGTACTTTCAGGAGATGCTAGACGTGGGTATTCGGCCTCCAACACAGTTGTTTAGTAACCTAAAGCAAGCCCTTCTTGATGATGGGAGAAAGGATGCTGTTGTAGGTTTTGGTTTGAAGATTGACAAACTGAGAAAAACCCCATTAGTTGGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

538

Amino Acids

61.06

Weight (kDa)

9.2

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	194 - 322	4.8e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	206 - 264	5.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	221 - 262	2.5e-11	PPR repeat family
PPR_2	PF13041	274 - 300	4.3e-07	PPR repeat family
PPR_3	PF13812	275 - 334	3.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	283 - 315	5.4e-10	PPR repeat
PPR_2	PF13041	286 - 333	4.4e-11	PPR repeat family
PPR	PF01535	289 - 319	6.6e-06	PPR repeat
PPR_long	PF17177	307 - 421	1.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	359 - 405	1e-10	PPR repeat family
PPR_3	PF13812	380 - 441	5.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	395 - 441	1.7e-07	PPR repeat family
PPR_1	PF12854	424 - 456	1.1e-09	PPR repeat
PPR_2	PF13041	427 - 476	6.6e-12	PPR repeat family
PPR_1	PF12854	458 - 490	2.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71060
fragaria_vesca	FvH4_4g32230
malus_domestica	MD13G1027000.v1.1 MD16G1030100.v1.1
prunus_persica	Prupe.1G322900_v2.0.a1
pyrus_communis	pycom13g02570
rosa_chinensis	RchiOBHm_Chr4g0440971
rosa_laevigata	RLG00000006135
rosa_multiflora	Rmu_sc0000424.1_g000028
rosa_roxburghii	Rroxscaffold_5G00381830
rosa_rugosa	Rorug04G0329800
rosa_samantha	Rh4BG394900 Rh4CG409800 Rh4DG388100
rosa_wichuraiana	Rw4G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1083
Acc36I	ACCTGC	2 cut(s)	688, 1443
AccB1I	GGYRCC	1 cut(s)	1072
AccB7I	CCANNNNNTGG	1 cut(s)	1601
AccII	CGCG	1 cut(s)	1130
AciI	CCGC	2 cut(s)	574, 1117
AclWI	GGATC	2 cut(s)	88, 848
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	3 cut(s)	312, 864, 1041
AcyI	GRCGYC	1 cut(s)	1377
AfaI	GTAC	3 cut(s)	767, 1291, 1457
AfiI	CCNNNNNNNGG	3 cut(s)	77, 173, 1601
AflIII	ACRYGT	2 cut(s)	1128, 1395
AgsI	TTSAA	9 cut(s)	22, 140, 367, 470, 496, 664, 748, 1040, 1570
AhlI	ACTAGT	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	1477
AjnI	CCWGG	2 cut(s)	1267, 1384
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
Alw26I	GTCTC	2 cut(s)	11, 545
AlwI	GGATC	2 cut(s)	88, 848
AoxI	GGCC	6 cut(s)	228, 285, 414, 603, 959, 1487
ApeKI	GCWGC	1 cut(s)	1272
ApoI	RAATTY	1 cut(s)	273
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
AseI	ATTAAT	1 cut(s)	990
AspLEI	GCGC	4 cut(s)	326, 389, 397, 1611
AspS9I	GGNCC	2 cut(s)	414, 1169
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	238, 333, 526
AvaII	GGWCC	1 cut(s)	1169
BanI	GGYRCC	1 cut(s)	1072
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	1373
BbvI	GCAGC	1 cut(s)	1259
BccI	CCATC	6 cut(s)	46, 154, 619, 780, 934, 1529
BceAI	ACGGC	2 cut(s)	300, 337
BciT130I	CCWGG	2 cut(s)	1269, 1386
BclI	TGATCA	2 cut(s)	882, 1410
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	11, 545
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	4 cut(s)	12, 117, 1304, 1472
BfoI	RGCGCY	3 cut(s)	327, 390, 398
BfuAI	ACCTGC	2 cut(s)	688, 1443
BisI	GCNGC	1 cut(s)	1273
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	1274
Bme1390I	CCNGG	3 cut(s)	174, 1269, 1386
Bme18I	GGWCC	1 cut(s)	1169
BmgBI	CACGTC	1 cut(s)	1477
BmgT120I	GGNCC	2 cut(s)	414, 1169
BmiI	GGNNCC	1 cut(s)	1074
BmrFI	CCNGG	3 cut(s)	174, 1269, 1386
BmsI	GCATC	5 cut(s)	1110, 1210, 1225, 1458, 1537
BpiI	GAAGAC	1 cut(s)	1373
Bpu1102I	GCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	1049
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	1377
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	193, 282
BsaWI	WCCGGW	1 cut(s)	408
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 1385, 1415
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 173, 1601
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	82, 1053
Bse3DI	GCAATG	2 cut(s)	439, 1327
BseBI	CCWGG	2 cut(s)	1269, 1386
BseDI	CCNNGG	2 cut(s)	193, 282
BseGI	GGATG	8 cut(s)	38, 791, 823, 1125, 1150, 1317, 1363, 1552
BseLI	CCNNNNNNNGG	3 cut(s)	77, 173, 1601
BseMI	GCAATG	2 cut(s)	439, 1327
BseMII	CTCAG	5 cut(s)	249, 280, 556, 674, 1574
BseNI	ACTGG	2 cut(s)	82, 1053
BseRI	GAGGAG	1 cut(s)	957
BseXI	GCAGC	1 cut(s)	1259
BsgI	GTGCAG	1 cut(s)	1471
Bsh1236I	CGCG	1 cut(s)	1130
BshFI	GGCC	6 cut(s)	230, 287, 416, 605, 961, 1489
BshNI	GGYRCC	1 cut(s)	1072
BsiSI	CCGG	3 cut(s)	173, 384, 409
BslI	CCNNNNNNNGG	3 cut(s)	77, 173, 1601
BsmAI	GTCTC	2 cut(s)	11, 545
BsmI	GAATGC	1 cut(s)	1395
BsnI	GGCC	6 cut(s)	230, 287, 416, 605, 961, 1489
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
Bsp1720I	GCTNAGC	1 cut(s)	542
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	574, 1117
BspANI	GGCC	6 cut(s)	230, 287, 416, 605, 961, 1489
BspCNI	CTCAG	5 cut(s)	250, 279, 555, 675, 1575
BspFNI	CGCG	1 cut(s)	1130
BspLI	GGNNCC	1 cut(s)	1074
BspMI	ACCTGC	2 cut(s)	688, 1443
BspPI	GGATC	2 cut(s)	88, 848
BspT107I	GGYRCC	1 cut(s)	1072
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	439, 1327
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	82, 1053
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	193, 282
BssMI	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
BssNI	GRCGYC	1 cut(s)	1377
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	1269, 1386
Bst4CI	ACNGT	3 cut(s)	492, 1285, 1500
Bst6I	CTCTTC	1 cut(s)	1004
BstACI	GRCGYC	1 cut(s)	1377
BstC8I	GCNNGC	6 cut(s)	314, 385, 539, 1265, 1450, 1521
BstDEI	CTNAG	5 cut(s)	258, 266, 542, 683, 1583
BstDSI	CCRYGG	2 cut(s)	193, 282
BstF5I	GGATG	8 cut(s)	38, 791, 823, 1125, 1150, 1317, 1363, 1552
BstFNI	CGCG	1 cut(s)	1130
BstH2I	RGCGCY	3 cut(s)	327, 390, 398
BstHHI	GCGC	4 cut(s)	326, 389, 397, 1611
BstKTI	GATC	7 cut(s)	83, 92, 101, 486, 856, 885, 1413
BstMAI	GTCTC	2 cut(s)	11, 545
BstMBI	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
BstMWI	GCNNNNNNNGC	6 cut(s)	309, 450, 543, 611, 1269, 1390
BstNI	CCWGG	2 cut(s)	1269, 1386
BstNSI	RCATGY	1 cut(s)	1399
BstSCI	CCNGG	3 cut(s)	172, 1267, 1384
BstUI	CGCG	1 cut(s)	1130
BstV1I	GCAGC	1 cut(s)	1259
BstV2I	GAAGAC	1 cut(s)	1373
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	6 cut(s)	230, 287, 416, 605, 961, 1489
BtgI	CCRYGG	2 cut(s)	193, 282
BtrI	CACGTC	1 cut(s)	1477
BtsCI	GGATG	8 cut(s)	38, 791, 823, 1125, 1150, 1317, 1363, 1552
BtsIMutI	CAGTG	1 cut(s)	1060
BveI	ACCTGC	2 cut(s)	688, 1443
Cac8I	GCNNGC	6 cut(s)	314, 385, 539, 1265, 1450, 1521
CfoI	GCGC	4 cut(s)	326, 389, 397, 1611
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	414, 1169
CseI	GACGC	2 cut(s)	1136, 1366
Csp6I	GTAC	3 cut(s)	766, 1290, 1456
CviAII	CATG	4 cut(s)	194, 523, 1396, 1427
CviQI	GTAC	3 cut(s)	766, 1290, 1456
DdeI	CTNAG	5 cut(s)	258, 266, 542, 683, 1583
DpnI	GATC	7 cut(s)	82, 91, 100, 485, 855, 884, 1412
DpnII	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	1004
EarI	CTCTTC	1 cut(s)	1004
Eco130I	CCWWGG	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	961
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	1169
Eco57I	CTGAAG	3 cut(s)	312, 864, 1041
EcoRII	CCWGG	2 cut(s)	1267, 1384
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	4 cut(s)	197, 526, 1399, 1430
FalI	AAGNNNNNCTT	2 cut(s)	1512, 1544
FatI	CATG	4 cut(s)	193, 522, 1395, 1426
FauNDI	CATATG	1 cut(s)	1294
FbaI	TGATCA	2 cut(s)	882, 1410
Fnu4HI	GCNGC	1 cut(s)	1273
FokI	GGATG	8 cut(s)	25, 798, 830, 1132, 1157, 1324, 1370, 1559
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	1273
FspBI	CTAG	4 cut(s)	12, 117, 1304, 1472
GlaI	GCGC	4 cut(s)	325, 388, 396, 1610
GluI	GCNGC	1 cut(s)	1273
HaeII	RGCGCY	3 cut(s)	327, 390, 398
HaeIII	GGCC	6 cut(s)	230, 287, 416, 605, 961, 1489
HapII	CCGG	3 cut(s)	173, 384, 409
HgaI	GACGC	2 cut(s)	1136, 1366
HhaI	GCGC	4 cut(s)	326, 389, 397, 1611
Hin1I	GRCGYC	1 cut(s)	1377
Hin1II	CATG	4 cut(s)	197, 526, 1399, 1430
Hin6I	GCGC	4 cut(s)	324, 387, 395, 1609
HinP1I	GCGC	4 cut(s)	324, 387, 395, 1609
HindIII	AAGCTT	3 cut(s)	23, 612, 1233
HinfI	GANTC	2 cut(s)	639, 1327
HpaII	CCGG	3 cut(s)	173, 384, 409
HphI	GGTGA	3 cut(s)	238, 333, 526
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	6 cut(s)	465, 601, 638, 658, 684, 1006
Hpy8I	GTNNAC	1 cut(s)	768
HpyAV	CCTTC	9 cut(s)	61, 586, 644, 735, 776, 832, 839, 972, 1535
HpyCH4III	ACNGT	3 cut(s)	492, 1285, 1500
HpyCH4IV	ACGT	1 cut(s)	1476
HpyCH4V	TGCA	6 cut(s)	444, 890, 1201, 1320, 1393, 1452
HpyF10VI	GCNNNNNNNGC	6 cut(s)	309, 450, 543, 611, 1269, 1390
HpyF3I	CTNAG	5 cut(s)	258, 266, 542, 683, 1583
HpySE526I	ACGT	1 cut(s)	1476
Hsp92I	GRCGYC	1 cut(s)	1377
Hsp92II	CATG	4 cut(s)	197, 526, 1399, 1430
HspAI	GCGC	4 cut(s)	324, 387, 395, 1609
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Ksp22I	TGATCA	2 cut(s)	882, 1410
Kzo9I	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
LmnI	GCTCC	1 cut(s)	1097
Lsp1109I	GCAGC	1 cut(s)	1259
LweI	GCATC	5 cut(s)	1110, 1210, 1225, 1458, 1537
MaeI	CTAG	4 cut(s)	12, 117, 1304, 1472
MaeII	ACGT	1 cut(s)	1476
MaeIII	GTNAC	3 cut(s)	339, 865, 1508
MalI	GATC	7 cut(s)	82, 91, 100, 485, 855, 884, 1412
MboI	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
MboII	GAAGA	9 cut(s)	379, 634, 916, 961, 967, 1021, 1233, 1378, 1582
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	273, 509, 1174
MluI	ACGCGT	1 cut(s)	1128
MmeI	TCCRAC	4 cut(s)	636, 795, 1075, 1517
MreI	CGCCGGCG	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	383
MseI	TTAA	4 cut(s)	435, 609, 759, 990
MspI	CCGG	3 cut(s)	173, 384, 409
MspR9I	CCNGG	3 cut(s)	174, 1269, 1386
Mva1269I	GAATGC	1 cut(s)	1395
MvaI	CCWGG	2 cut(s)	1269, 1386
MvnI	CGCG	1 cut(s)	1130
MwoI	GCNNNNNNNGC	6 cut(s)	309, 450, 543, 611, 1269, 1390
NaeI	GCCGGC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	193
NdeI	CATATG	1 cut(s)	1294
NdeII	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	4 cut(s)	197, 526, 1399, 1430
NlaIV	GGNNCC	1 cut(s)	1074
NmuCI	GTSAC	2 cut(s)	339, 865
NspI	RCATGY	1 cut(s)	1399
PceI	AGGCCT	1 cut(s)	961
PciI	ACATGT	1 cut(s)	1395
PctI	GAATGC	1 cut(s)	1395
PdiI	GCCGGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	639, 1327
PflMI	CCANNNNNTGG	1 cut(s)	1601
PkrI	GCNGC	1 cut(s)	1274
PscI	ACATGT	1 cut(s)	1395
PshBI	ATTAAT	1 cut(s)	990
PsiI	TTATAA	1 cut(s)	1083
Psp6I	CCWGG	2 cut(s)	1267, 1384
PspGI	CCWGG	2 cut(s)	1267, 1384
PspN4I	GGNNCC	1 cut(s)	1074
PspPI	GGNCC	2 cut(s)	414, 1169
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	3 cut(s)	767, 1291, 1457
RsaNI	GTAC	3 cut(s)	766, 1290, 1456
SaqAI	TTAA	4 cut(s)	435, 609, 759, 990
SatI	GCNGC	1 cut(s)	1273
Sau3AI	GATC	7 cut(s)	80, 89, 98, 483, 853, 882, 1410
Sau96I	GGNCC	2 cut(s)	414, 1169
ScrFI	CCNGG	3 cut(s)	174, 1269, 1386
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	5 cut(s)	1110, 1210, 1225, 1458, 1537
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	1169
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	3 cut(s)	273, 509, 1174
SseBI	AGGCCT	1 cut(s)	961
SsiI	CCGC	2 cut(s)	574, 1117
SspMI	CTAG	4 cut(s)	12, 117, 1304, 1472
StuI	AGGCCT	1 cut(s)	961
StyD4I	CCNGG	3 cut(s)	172, 1267, 1384
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	492, 1285, 1500
TaiI	ACGT	1 cut(s)	1479
TaqI	TCGA	7 cut(s)	569, 692, 723, 852, 1180, 1219, 1330
TasI	AATT	3 cut(s)	273, 509, 1174
TatI	WGTACW	1 cut(s)	1289
TfiI	GAWTC	2 cut(s)	639, 1327
Tru1I	TTAA	4 cut(s)	435, 609, 759, 990
Tru9I	TTAA	4 cut(s)	435, 609, 759, 990
TscAI	CASTG	1 cut(s)	1060
TseFI	GTSAC	2 cut(s)	339, 865
TseI	GCWGC	1 cut(s)	1272
Tsp45I	GTSAC	2 cut(s)	339, 865
TspDTI	ATGAA	6 cut(s)	539, 741, 746, 851, 1311, 1379
TspRI	CASTG	1 cut(s)	1060
Van91I	CCANNNNNTGG	1 cut(s)	1601
VpaK11BI	GGWCC	1 cut(s)	1169
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	1 cut(s)	1399
XspI	CTAG	4 cut(s)	12, 117, 1304, 1472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.