Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016044

Physical Location & Seq

Genomic Coordinates Forward (+)

60417171 .. 60418772

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGGGTCTCTCTAGATTTTTCAAGCTTTTACCAAAACCATCCAAAAATCCCTTCTTTCTTTTCCCAAATCCTCAAACTGGTTCTCCCAGATCAGTGAGATCACTCACAAACCTTACTAGTAATCCAAACCCCTATGTTGAACACCCATCTGGGCTCTTACGCAATCCCAATCCTGGTATTTACAGAGCAATCCATGGCACTCTATACAAAACCCAAGTGCTTGATGAGGCCAATACCCACGATATCACCCAAGAGGCTGAGAAAATCAGCAAAATTCTATCCACGGCCAACTCCAATCCTCGCATTGAGAGCTTGCTCGACGGCGCTTCAGTCAAGGTGTCACCAACGCTTGTCGTTGAGGTCTTGAAGAAGCTCAACAACGCCGGCGCTCTGGCGCTCTCGTTTTTCCGGTGGGCCGAAAAGCAAAAGGGGTTTAAGCATTGCACAGAGAGCTACAATGCTCTGATTGAAGCTCTGGGTAAGATCAAACAGTTCAAGATAATATGGGAATTGGTAAATGACATGAACAACAAAGGCCTGCTCAGCAAAGAGACTTTCGCTTTGATTTCGAGGCGGTATGCGAGGGCGAGGAAGGTTTCAGAGGCCATTAAAGCTTTTGAGAAGATGGAGAAGTTTGGGATCAAGTTAGAAGGGTCGGATTTCAATAGACTGATTGATACTCTGAGCAAGTCGAGGCAGGTTGAGAAAGCACAGGAGGTGTTCGATGAAATGAAGCACAGAAGGTTCAAACCTGATATTAAGTCGTACACTATTTTGCTGGAAGGATGGGGTCAGCAACAGAATTTTTTGAGGTTGGATGAGGTTTATAGAGAAATGAAGGCTGAAGGGTTCGATCCAGATGTTGTGACTTATGGTATTTTGATCAATGCACATTGTAAGGGCAAGAAGTATAACGAAGCGATTGGATTGTTTCAAGAGATGGAAGCGAAGAATGTGAGGCCTTCTCCTCATATCTTCTGTATGCTGATTAATGGATTAGGCTCAGAAAAGAGATTGGCTGAAGCTCTTGAGTTTTTTGAAGGGTCCAAAGCCAGTGGTTTAGAACCGGAGGCGCCTACTTATAATGCTGTTGTTGGAGCTTACTGCTGGTCAATGCGGATCCCTGACGCGTTCGGGGTGGTGGATGAGATGAGAAAATGTGGGATTGGTCCTAATTCTCGAACCTACGATATAATCTTGCATCACTTGGTTAAGCATCGAAGAACTGAACAAGCTTACTCGGTATTCCAGAAAATCAGTAGCGAACCAACAGTAAGTACATACGAAATCCTAGTGAGGATGTTTTGCAATGAGAAGCGAGTGGATATGGCATTACGGGTTTGGGATGAGATGAAGACTAAAGGCGTCCTGCCAGGAATGCACATGTTCTCCACATTGATCAACAGCTTGTGCCATGAGAACAAGTTAGATGATGCATGCAGGTACTTTCAGGAGATGCTAGACATGGGTATTAGGCCTCCGACACAGTTGTTTAGTAACCTAAAGCAAGCGCTTCTTGATGATGGGAGAAAGGATGCTGTCATGAGTTTCGGTTTGAAGATTGAAGAACTGAGAAAAACCCCATTAGTTGGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

533

Amino Acids

60.7

Weight (kDa)

9.19

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	194 - 322	9.5e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	198 - 314	7.8e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	206 - 264	5.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	221 - 262	2.5e-11	PPR repeat family
PPR_2	PF13041	274 - 300	2.8e-07	PPR repeat family
PPR_3	PF13812	275 - 334	8.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	283 - 315	3.9e-10	PPR repeat
PPR_2	PF13041	286 - 333	2.6e-12	PPR repeat family
PPR	PF01535	289 - 319	4.1e-07	PPR repeat
PPR_long	PF17177	304 - 421	4.8e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	359 - 405	2.2e-10	PPR repeat family
PPR_1	PF12854	422 - 452	4.2e-07	PPR repeat
PPR_2	PF13041	423 - 472	1e-11	PPR repeat family
PPR_1	PF12854	454 - 486	6.1e-07	PPR repeat
PPR	PF01535	462 - 491	8.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71060
fragaria_vesca	FvH4_4g32230
malus_domestica	MD13G1027000.v1.1 MD16G1030100.v1.1
prunus_persica	Prupe.1G322900_v2.0.a1
pyrus_communis	pycom13g02570
rosa_chinensis	RchiOBHm_Chr4g0440971
rosa_laevigata	RLG00000006135
rosa_multiflora	Rmu_sc0000424.1_g000028
rosa_roxburghii	Rroxscaffold_5G00381830
rosa_rugosa	Rorug04G0329800
rosa_samantha	Rh4BG394900 Rh4CG409800 Rh4DG388100
rosa_wichuraiana	Rw4G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1083
Acc36I	ACCTGC	2 cut(s)	688, 1431
AccB1I	GGYRCC	1 cut(s)	1072
AccB7I	CCANNNNNTGG	1 cut(s)	1589
AccII	CGCG	1 cut(s)	1130
AciI	CCGC	2 cut(s)	574, 1117
AclWI	GGATC	4 cut(s)	647, 848, 1114, 1127
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	273, 802
AcuI	CTGAAG	3 cut(s)	312, 864, 1041
AcyI	GRCGYC	2 cut(s)	1073, 1365
AfaI	GTAC	3 cut(s)	767, 1279, 1445
AfeI	AGCGCT	1 cut(s)	1512
AfiI	CCNNNNNNNGG	3 cut(s)	77, 173, 1589
AflIII	ACRYGT	2 cut(s)	1128, 1383
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	172, 1372
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
Alw26I	GTCTC	2 cut(s)	11, 545
AlwI	GGATC	4 cut(s)	647, 848, 1114, 1127
Aor51HI	AGCGCT	1 cut(s)	1512
AoxI	GGCC	7 cut(s)	228, 285, 414, 535, 603, 959, 1475
ApoI	RAATTY	2 cut(s)	273, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
AseI	ATTAAT	1 cut(s)	990
AspLEI	GCGC	6 cut(s)	326, 389, 397, 1075, 1513, 1599
AspS9I	GGNCC	3 cut(s)	414, 1044, 1169
AsuHPI	GGTGA	2 cut(s)	238, 333
AvaII	GGWCC	2 cut(s)	1044, 1169
BamHI	GGATCC	1 cut(s)	1119
BanI	GGYRCC	1 cut(s)	1072
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	1361
BccI	CCATC	6 cut(s)	46, 154, 619, 780, 934, 1517
BceAI	ACGGC	2 cut(s)	300, 337
BciT130I	CCWGG	2 cut(s)	174, 1374
BclI	TGATCA	2 cut(s)	882, 1398
BcoDI	GTCTC	2 cut(s)	11, 545
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	4 cut(s)	12, 117, 1292, 1460
BfoI	RGCGCY	5 cut(s)	327, 390, 398, 1076, 1514
BfuAI	ACCTGC	2 cut(s)	688, 1431
BlpI	GCTNAGC	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	174, 1374
Bme18I	GGWCC	2 cut(s)	1044, 1169
BmgT120I	GGNCC	3 cut(s)	414, 1044, 1169
BmiI	GGNNCC	3 cut(s)	1045, 1074, 1121
BmrFI	CCNGG	2 cut(s)	174, 1374
BmsI	GCATC	5 cut(s)	1210, 1225, 1423, 1446, 1525
BpiI	GAAGAC	1 cut(s)	1361
BplI	GAGNNNNNCTC	2 cut(s)	949, 981
Bpu1102I	GCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	1049
BsaHI	GRCGYC	2 cut(s)	1073, 1365
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	193, 282
BsaWI	WCCGGW	2 cut(s)	408, 1066
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 1373, 1403
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 173, 1589
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	82, 1053
Bse3DI	GCAATG	2 cut(s)	439, 1315
BseBI	CCWGG	2 cut(s)	174, 1374
BseDI	CCNNGG	2 cut(s)	193, 282
BseGI	GGATG	7 cut(s)	38, 791, 823, 1150, 1305, 1351, 1540
BseLI	CCNNNNNNNGG	3 cut(s)	77, 173, 1589
BseMI	GCAATG	2 cut(s)	439, 1315
BseMII	CTCAG	5 cut(s)	249, 556, 674, 1017, 1562
BseNI	ACTGG	2 cut(s)	82, 1053
BseRI	GAGGAG	1 cut(s)	957
Bsh1236I	CGCG	1 cut(s)	1130
BshFI	GGCC	7 cut(s)	230, 287, 416, 537, 605, 961, 1477
BshNI	GGYRCC	1 cut(s)	1072
BsiSI	CCGG	3 cut(s)	384, 409, 1067
BslI	CCNNNNNNNGG	3 cut(s)	77, 173, 1589
BsmAI	GTCTC	2 cut(s)	11, 545
BsmI	GAATGC	1 cut(s)	1383
BsnI	GGCC	7 cut(s)	230, 287, 416, 537, 605, 961, 1477
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
Bsp1720I	GCTNAGC	1 cut(s)	542
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	574, 1117
BspANI	GGCC	7 cut(s)	230, 287, 416, 537, 605, 961, 1477
BspCNI	CTCAG	5 cut(s)	250, 555, 675, 1016, 1563
BspFNI	CGCG	1 cut(s)	1130
BspHI	TCATGA	1 cut(s)	1542
BspLI	GGNNCC	3 cut(s)	1045, 1074, 1121
BspMI	ACCTGC	2 cut(s)	688, 1431
BspPI	GGATC	4 cut(s)	647, 848, 1114, 1127
BspT107I	GGYRCC	1 cut(s)	1072
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	439, 1315
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	82, 1053
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	193, 282
BssMI	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
BssNI	GRCGYC	2 cut(s)	1073, 1365
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	174, 1374
Bst4CI	ACNGT	3 cut(s)	492, 1273, 1488
BstACI	GRCGYC	2 cut(s)	1073, 1365
BstC8I	GCNNGC	5 cut(s)	314, 385, 539, 1438, 1509
BstDEI	CTNAG	5 cut(s)	258, 542, 683, 1003, 1571
BstDSI	CCRYGG	2 cut(s)	193, 282
BstF5I	GGATG	7 cut(s)	38, 791, 823, 1150, 1305, 1351, 1540
BstFNI	CGCG	1 cut(s)	1130
BstH2I	RGCGCY	5 cut(s)	327, 390, 398, 1076, 1514
BstHHI	GCGC	6 cut(s)	326, 389, 397, 1075, 1513, 1599
BstKTI	GATC	8 cut(s)	92, 101, 486, 642, 856, 885, 1122, 1401
BstMAI	GTCTC	2 cut(s)	11, 545
BstMBI	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
BstMWI	GCNNNNNNNGC	5 cut(s)	309, 450, 543, 611, 1378
BstNI	CCWGG	2 cut(s)	174, 1374
BstNSI	RCATGY	2 cut(s)	1387, 1440
BstSCI	CCNGG	2 cut(s)	172, 1372
BstUI	CGCG	1 cut(s)	1130
BstV2I	GAAGAC	1 cut(s)	1361
BstX2I	RGATCY	1 cut(s)	1119
BstYI	RGATCY	1 cut(s)	1119
BsuRI	GGCC	7 cut(s)	230, 287, 416, 537, 605, 961, 1477
BtgI	CCRYGG	2 cut(s)	193, 282
BtsCI	GGATG	7 cut(s)	38, 791, 823, 1150, 1305, 1351, 1540
BtsIMutI	CAGTG	2 cut(s)	99, 1060
BveI	ACCTGC	2 cut(s)	688, 1431
Cac8I	GCNNGC	5 cut(s)	314, 385, 539, 1438, 1509
CciI	TCATGA	1 cut(s)	1542
CfoI	GCGC	6 cut(s)	326, 389, 397, 1075, 1513, 1599
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	414, 1044, 1169
CseI	GACGC	2 cut(s)	1136, 1354
Csp6I	GTAC	3 cut(s)	766, 1278, 1444
CspCI	CAANNNNNGTGG	2 cut(s)	1036, 1071
CviAII	CATG	7 cut(s)	194, 523, 1384, 1415, 1437, 1465, 1543
CviQI	GTAC	3 cut(s)	766, 1278, 1444
DdeI	CTNAG	5 cut(s)	258, 542, 683, 1003, 1571
DinI	GGCGCC	1 cut(s)	1074
DpnI	GATC	8 cut(s)	91, 100, 485, 641, 855, 884, 1121, 1400
DpnII	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	193
Eco147I	AGGCCT	3 cut(s)	537, 961, 1477
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	1044, 1169
Eco47III	AGCGCT	1 cut(s)	1512
Eco57I	CTGAAG	3 cut(s)	312, 864, 1041
EcoRII	CCWGG	2 cut(s)	172, 1372
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	1438
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	1074
EheI	GGCGCC	1 cut(s)	1074
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	7 cut(s)	197, 526, 1387, 1418, 1440, 1468, 1546
FalI	AAGNNNNNCTT	2 cut(s)	1500, 1532
FatI	CATG	7 cut(s)	193, 522, 1383, 1414, 1436, 1464, 1542
FbaI	TGATCA	2 cut(s)	882, 1398
FokI	GGATG	7 cut(s)	25, 798, 830, 1157, 1312, 1358, 1547
FriOI	GRGCYC	1 cut(s)	156
FspBI	CTAG	4 cut(s)	12, 117, 1292, 1460
GlaI	GCGC	6 cut(s)	325, 388, 396, 1074, 1512, 1598
HaeII	RGCGCY	5 cut(s)	327, 390, 398, 1076, 1514
HaeIII	GGCC	7 cut(s)	230, 287, 416, 537, 605, 961, 1477
HapII	CCGG	3 cut(s)	384, 409, 1067
HgaI	GACGC	2 cut(s)	1136, 1354
HhaI	GCGC	6 cut(s)	326, 389, 397, 1075, 1513, 1599
Hin1I	GRCGYC	2 cut(s)	1073, 1365
Hin1II	CATG	7 cut(s)	197, 526, 1387, 1418, 1440, 1468, 1546
Hin6I	GCGC	6 cut(s)	324, 387, 395, 1073, 1511, 1597
HinP1I	GCGC	6 cut(s)	324, 387, 395, 1073, 1511, 1597
HindIII	AAGCTT	3 cut(s)	23, 612, 1233
HpaII	CCGG	3 cut(s)	384, 409, 1067
HphI	GGTGA	2 cut(s)	238, 333
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	6 cut(s)	465, 601, 658, 684, 1006, 1482
Hpy8I	GTNNAC	1 cut(s)	768
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	9 cut(s)	61, 586, 644, 735, 776, 832, 839, 972, 1034
HpyCH4III	ACNGT	3 cut(s)	492, 1273, 1488
HpyCH4V	TGCA	7 cut(s)	444, 890, 1201, 1308, 1381, 1436, 1440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	309, 450, 543, 611, 1378
HpyF3I	CTNAG	5 cut(s)	258, 542, 683, 1003, 1571
Hsp92I	GRCGYC	2 cut(s)	1073, 1365
Hsp92II	CATG	7 cut(s)	197, 526, 1387, 1418, 1440, 1468, 1546
HspAI	GCGC	6 cut(s)	324, 387, 395, 1073, 1511, 1597
KasI	GGCGCC	1 cut(s)	1072
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Ksp22I	TGATCA	2 cut(s)	882, 1398
Kzo9I	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
LmnI	GCTCC	1 cut(s)	1097
LweI	GCATC	5 cut(s)	1210, 1225, 1423, 1446, 1525
MaeI	CTAG	4 cut(s)	12, 117, 1292, 1460
MaeIII	GTNAC	3 cut(s)	339, 865, 1496
MalI	GATC	8 cut(s)	91, 100, 485, 641, 855, 884, 1121, 1400
MboI	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
MboII	GAAGA	8 cut(s)	379, 634, 961, 967, 1233, 1366, 1570, 1577
MflI	RGATCY	1 cut(s)	1119
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	4 cut(s)	273, 509, 802, 1174
MluI	ACGCGT	1 cut(s)	1128
Mly113I	GGCGCC	1 cut(s)	1073
MmeI	TCCRAC	4 cut(s)	636, 795, 1075, 1505
Mph1103I	ATGCAT	1 cut(s)	1438
MreI	CGCCGGCG	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	383
MseI	TTAA	5 cut(s)	435, 609, 759, 990, 1212
MspI	CCGG	3 cut(s)	384, 409, 1067
MspR9I	CCNGG	2 cut(s)	174, 1374
Mva1269I	GAATGC	1 cut(s)	1383
MvaI	CCWGG	2 cut(s)	174, 1374
MvnI	CGCG	1 cut(s)	1130
MwoI	GCNNNNNNNGC	5 cut(s)	309, 450, 543, 611, 1378
NaeI	GCCGGC	1 cut(s)	385
NarI	GGCGCC	1 cut(s)	1073
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	7 cut(s)	197, 526, 1387, 1418, 1440, 1468, 1546
NlaIV	GGNNCC	3 cut(s)	1045, 1074, 1121
NmuCI	GTSAC	2 cut(s)	339, 865
NsiI	ATGCAT	1 cut(s)	1438
NspI	RCATGY	2 cut(s)	1387, 1440
PaeI	GCATGC	1 cut(s)	1440
PagI	TCATGA	1 cut(s)	1542
PceI	AGGCCT	3 cut(s)	537, 961, 1477
PciI	ACATGT	1 cut(s)	1383
PctI	GAATGC	1 cut(s)	1383
PdiI	GCCGGC	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	1589
PluTI	GGCGCC	1 cut(s)	1076
PscI	ACATGT	1 cut(s)	1383
PshBI	ATTAAT	1 cut(s)	990
PsiI	TTATAA	1 cut(s)	1083
Psp6I	CCWGG	2 cut(s)	172, 1372
PspGI	CCWGG	2 cut(s)	172, 1372
PspN4I	GGNNCC	3 cut(s)	1045, 1074, 1121
PspPI	GGNCC	3 cut(s)	414, 1044, 1169
PsuI	RGATCY	1 cut(s)	1119
RsaI	GTAC	3 cut(s)	767, 1279, 1445
RsaNI	GTAC	3 cut(s)	766, 1278, 1444
SaqAI	TTAA	5 cut(s)	435, 609, 759, 990, 1212
Sau3AI	GATC	8 cut(s)	89, 98, 483, 639, 853, 882, 1119, 1398
Sau96I	GGNCC	3 cut(s)	414, 1044, 1169
ScrFI	CCNGG	2 cut(s)	174, 1374
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	5 cut(s)	1210, 1225, 1423, 1446, 1525
SfoI	GGCGCC	1 cut(s)	1074
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	1044, 1169
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	1440
Sse9I	AATT	4 cut(s)	273, 509, 802, 1174
SseBI	AGGCCT	3 cut(s)	537, 961, 1477
SsiI	CCGC	2 cut(s)	574, 1117
SspDI	GGCGCC	1 cut(s)	1072
SspMI	CTAG	4 cut(s)	12, 117, 1292, 1460
StuI	AGGCCT	3 cut(s)	537, 961, 1477
StyD4I	CCNGG	2 cut(s)	172, 1372
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	492, 1273, 1488
TaqI	TCGA	7 cut(s)	318, 569, 692, 723, 852, 1180, 1219
TasI	AATT	4 cut(s)	273, 509, 802, 1174
TatI	WGTACW	1 cut(s)	1277
Tru1I	TTAA	5 cut(s)	435, 609, 759, 990, 1212
Tru9I	TTAA	5 cut(s)	435, 609, 759, 990, 1212
TscAI	CASTG	2 cut(s)	99, 1060
TseFI	GTSAC	2 cut(s)	339, 865
Tsp45I	GTSAC	2 cut(s)	339, 865
TspDTI	ATGAA	5 cut(s)	539, 741, 746, 851, 1367
TspRI	CASTG	2 cut(s)	99, 1060
Van91I	CCANNNNNTGG	1 cut(s)	1589
VpaK11BI	GGWCC	2 cut(s)	1044, 1169
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	2 cut(s)	273, 802
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	2 cut(s)	1387, 1440
XspI	CTAG	4 cut(s)	12, 117, 1292, 1460
Zsp2I	ATGCAT	1 cut(s)	1438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.