Prupe.1G322900_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
30848503 .. 30852884
4382 bp
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UTR
Exon/CDS
Intron
Prupe.1G322900.1

Sequence Viewer

Length: 1680 bp
ATGGGTCTCTCTCGATTTTTCAATCTTGTATCAAAACCATCCAAAAAGCCCATCAATTCCTTCCTTCCGTTCCCCAATCTTCGTTCAACGCCAACCAGTCAAACTGGTTCTCACAGATCATTTACGACTTCACTACAAAGCATCAAATACACAAACTTCACTCGTAATCGAACACTACATACTGAAAATCCATCTGGATTCCTCAGCAATCGCACTGGTGGTTTTTATAGAGCAATTCACGATGGCCTAGGAAAAACCCAAGTGCCTGATGAGGCCAGTGACAAAATCCCAGGTGCAAATAACCGCGAAATCACCGAAGATGCTGAAAGAATCTGTAGAATACTATCCACCAGCAACTCTAAATCCCCCATCGATAGCTTTCTCGATGGTGCTTCAGTTGAGGTGTCGCCGGCACTTGTAGTCGAGGTCTTGAAAAAGCTCAGCAATGCCGGCGTTCTTGCGCTCTCGTTTTTCCGGTGGGCAGAGAAGCAAAAAGGGTTTAAGCATACTATGGAGAGCTACAATGCTTTGATTGAAGCTCTGGGTAAGATCAAACAGTTCAAGATGATATGGGAATTGGTGAATGACATGAAGAGTAAAGGGCTGTTGAGTAAGGAGACTTTTGCTTTGATTTCGCGAAGATATTCGAGGGCCAAAAAGGTTAAGGAAGCGATAGAGACGTTCGAAAAGATGGAGAAGTTTGGAATGAAAGTAGAAGGGTCGGATTTCAATAGACTGATTGATACTTTAAGCAAGTCGAGGCAGGTTGAGAAAGCACAGGAGGTGTTTGATAAAATGAAGCACACAAGGTTTAAACCCGATATTAAGTCGTACACTATTTTGTTAGAAGGATGGGGTCAAGAACAGAACTTTTTGAGGTTGAATGAAGTTTATAGAGAAATGAAGGACGAGGGGTTCGACCCGGATGTTGTGACTTGTGGTATTCTGATCAATGCGCATTGTAAAGCTAGGAAGTATGATGAAGCCATTGATTTGTTTCGTGAGATGGAAGCAAAGAATGTCAAGGCTACACCTCATATTTTCTGTATTTTGATTAATGGGTTGGGTTCTGAAAGGAGGTTGAGTGAAGCCCTTGAGTTTTTTGAACTAAACAAAGCAAGTGGTTTCGAGCCGGAGGCACCCACATATAATGCTCTTGTTGGGGCTTACTGCTGGTCAATGCGGATGCATGATGCGTTTAGGGTGGTGGAGGAGATGAGGAAATGTGGGATTGGTCCCAATCCTCGAACTTATGATATAATCTTACATCACTTGGTAAAGGCTCGAAGAACAGAACAAGCTTACTCCGTTTTCCAGCAAATCAGTAGGGAGCCTAGCTGTGAGCCTACAGTAAGTACGTATGAAATCCTAGTGAGGATGTTTTGTAACGAGGATCAAGTGGATATGGCATTACGGGTTTGGGATCGGATGAAGACTAAAGGCGTCCTGCCGGGAATGCACATGTTCTCCACATTGATCAACAGCTTGTGCCATGAGAATAAGTTAGATGACGCTTGCAAGTACTTTCAAGAGATGTTGGACGTGGGCATTCGACCTCCAGCGCAGATGTTTAGTAATTTGAAACAAGCCCTTCTCGATGAGGGGAGAAAGGATGATGTAATAAGTTTTGGTCTGAAGATTGACAGACTGAGAAAAACTCCATTAGTTGGTTTGCGCTAA

Protein Analysis

560

Amino Acids

63.92

Weight (kDa)

9.09

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71060
fragaria_vesca FvH4_4g32230
malus_domestica MD13G1027000.v1.1 MD16G1030100.v1.1
prunus_persica Prupe.1G322900_v2.0.a1
pyrus_communis pycom13g02570
rosa_chinensis RchiOBHm_Chr4g0440971
rosa_laevigata RLG00000006135
rosa_multiflora Rmu_sc0000424.1_g000028
rosa_roxburghii Rroxscaffold_5G00381830
rosa_rugosa Rorug04G0329800
rosa_samantha Rh4BG394900 Rh4CG409800 Rh4DG388100
rosa_wichuraiana Rw4G032870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 957
Acc36I ACCTGC 1 cut(s) 754
AccB1I GGYRCC 1 cut(s) 1138
AccB7I CCANNNNNTGG 1 cut(s) 1667
AccII CGCG 2 cut(s) 306, 637
AciI CCGC 2 cut(s) 304, 1183
AclWI GGATC 2 cut(s) 1401, 1431
AcuI CTGAAG 2 cut(s) 378, 1655
AcyI GRCGYC 1 cut(s) 1443
AfaI GTAC 3 cut(s) 833, 1357, 1523
AfiI CCNNNNNNNGG 1 cut(s) 1667
AflIII ACRYGT 1 cut(s) 1461
AjiI CACGTC 1 cut(s) 1543
AjnI CCWGG 1 cut(s) 289
AloI GAACNNNNNNTCC 2 cut(s) 899, 931
AluBI AGCT 8 cut(s) 378, 439, 519, 539, 968, 1301, 1338, 1485
AluI AGCT 8 cut(s) 378, 439, 519, 539, 968, 1301, 1338, 1485
Alw26I GTCTC 3 cut(s) 11, 611, 671
AlwI GGATC 2 cut(s) 1401, 1431
AoxI GGCC 3 cut(s) 244, 273, 651
ArsI GACNNNNNNTTYG 4 cut(s) 610, 642, 899, 931
AseI ATTAAT 1 cut(s) 1056
Asp700I GAANNNNTTC 1 cut(s) 643
AspA2I CCTAGG 1 cut(s) 247
AspLEI GCGC 4 cut(s) 463, 958, 1564, 1677
AspS9I GGNCC 2 cut(s) 651, 1235
AsuC2I CCSGG 2 cut(s) 923, 1452
AsuHPI GGTGA 2 cut(s) 304, 592
AsuII TTCGAA 1 cut(s) 684
AvaII GGWCC 1 cut(s) 1235
AvrII CCTAGG 1 cut(s) 247
BanI GGYRCC 1 cut(s) 1138
BbsI GAAGAC 1 cut(s) 1439
BbvCI CCTCAGC 1 cut(s) 203
BccI CCATC 9 cut(s) 46, 59, 199, 236, 377, 380, 685, 846, 1000
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 948, 1476
BcnI CCSGG 2 cut(s) 923, 1452
BcoDI GTCTC 3 cut(s) 11, 611, 671
BfaI CTAG 4 cut(s) 248, 969, 1335, 1370
BfmI CTRYAG 2 cut(s) 334, 1347
BfuAI ACCTGC 1 cut(s) 754
BlnI CCTAGG 1 cut(s) 247
BlpI GCTNAGC 1 cut(s) 440
BmcAI AGTACT 1 cut(s) 1523
Bme1390I CCNGG 3 cut(s) 291, 923, 1452
Bme18I GGWCC 1 cut(s) 1235
BmgBI CACGTC 1 cut(s) 1543
BmgT120I GGNCC 2 cut(s) 651, 1235
BmiI GGNNCC 3 cut(s) 1140, 1237, 1332
BmrFI CCNGG 3 cut(s) 291, 923, 1452
BmsI GCATC 4 cut(s) 150, 310, 1176, 1183
BpiI GAAGAC 1 cut(s) 1439
BplI GAGNNNNNCTC 2 cut(s) 1642, 1674
BpmI CTGGAG 1 cut(s) 1542
Bpu10I CCTNAGC 1 cut(s) 203
Bpu1102I GCTNAGC 1 cut(s) 440
Bpu14I TTCGAA 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 1115
BpuMI CCSGG 2 cut(s) 923, 1452
Bsa29I ATCGAT 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 1359
BsaHI GRCGYC 1 cut(s) 1443
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 247, 289
BsaWI WCCGGW 1 cut(s) 474
BsaXI ACNNNNNCTCC 4 cut(s) 1069, 1099, 1451, 1481
Bsc4I CCNNNNNNNGG 1 cut(s) 1667
Bse118I RCCGGY 2 cut(s) 409, 449
Bse1I ACTGG 4 cut(s) 96, 109, 220, 276
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 247, 289
BseGI GGATG 7 cut(s) 38, 857, 931, 1191, 1383, 1434, 1618
BseLI CCNNNNNNNGG 1 cut(s) 1667
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 217, 454, 1640
BseNI ACTGG 4 cut(s) 96, 109, 220, 276
BseRI GAGGAG 1 cut(s) 1226
Bsh1236I CGCG 2 cut(s) 306, 637
BshFI GGCC 3 cut(s) 246, 275, 653
BshNI GGYRCC 1 cut(s) 1138
BshVI ATCGAT 1 cut(s) 372
BsiSI CCGG 6 cut(s) 410, 450, 475, 923, 1133, 1451
BslFI GGGAC 1 cut(s) 1221
BslI CCNNNNNNNGG 1 cut(s) 1667
BsmAI GTCTC 3 cut(s) 11, 611, 671
BsmBI CGTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 1221
BsmI GAATGC 2 cut(s) 1461, 1548
BsnI GGCC 3 cut(s) 246, 275, 653
Bso31I GGTCTC 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 684
Bsp143I GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
Bsp1720I GCTNAGC 1 cut(s) 440
Bsp68I TCGCGA 1 cut(s) 637
BspACI CCGC 2 cut(s) 304, 1183
BspANI GGCC 3 cut(s) 246, 275, 653
BspCNI CTCAG 3 cut(s) 216, 453, 1641
BspDI ATCGAT 1 cut(s) 372
BspFNI CGCG 2 cut(s) 306, 637
BspLI GGNNCC 3 cut(s) 1140, 1237, 1332
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 2 cut(s) 1401, 1431
BspT104I TTCGAA 1 cut(s) 684
BspT107I GGYRCC 1 cut(s) 1138
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 2 cut(s) 409, 449
BsrI ACTGG 4 cut(s) 96, 109, 220, 276
BssAI RCCGGY 2 cut(s) 409, 449
BssECI CCNNGG 2 cut(s) 247, 289
BssMI GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
BssNI GRCGYC 1 cut(s) 1443
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 558, 1351
Bst6I CTCTTC 1 cut(s) 587
BstACI GRCGYC 1 cut(s) 1443
BstBAI YACGTR 1 cut(s) 1359
BstBI TTCGAA 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 411, 451, 1516
BstDEI CTNAG 3 cut(s) 203, 440, 1649
BstF5I GGATG 7 cut(s) 38, 857, 931, 1191, 1383, 1434, 1618
BstFNI CGCG 2 cut(s) 306, 637
BstHHI GCGC 4 cut(s) 463, 958, 1564, 1677
BstKTI GATC 6 cut(s) 119, 552, 951, 1396, 1426, 1479
BstMAI GTCTC 3 cut(s) 11, 611, 671
BstMBI GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
BstMWI GCNNNNNNNGC 2 cut(s) 450, 1456
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 1465
BstSCI CCNGG 3 cut(s) 289, 921, 1450
BstSFI CTRYAG 2 cut(s) 334, 1347
BstSNI TACGTA 1 cut(s) 1359
BstUI CGCG 2 cut(s) 306, 637
BstV2I GAAGAC 1 cut(s) 1439
Bsu15I ATCGAT 1 cut(s) 372
BsuRI GGCC 3 cut(s) 246, 275, 653
BsuTUI ATCGAT 1 cut(s) 372
BtrI CACGTC 1 cut(s) 1543
BtsCI GGATG 7 cut(s) 38, 857, 931, 1191, 1383, 1434, 1618
BtsIMutI CAGTG 2 cut(s) 213, 283
BtuMI TCGCGA 1 cut(s) 637
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 3 cut(s) 411, 451, 1516
CfoI GCGC 4 cut(s) 463, 958, 1564, 1677
Cfr10I RCCGGY 2 cut(s) 409, 449
Cfr13I GGNCC 2 cut(s) 651, 1235
ClaI ATCGAT 1 cut(s) 372
CseI GACGC 2 cut(s) 1432, 1520
Csp6I GTAC 3 cut(s) 832, 1356, 1522
CspCI CAANNNNNGTGG 2 cut(s) 1102, 1137
CviAII CATG 4 cut(s) 589, 1190, 1462, 1493
CviQI GTAC 3 cut(s) 832, 1356, 1522
DdeI CTNAG 3 cut(s) 203, 440, 1649
DpnI GATC 6 cut(s) 118, 551, 950, 1395, 1425, 1478
DpnII GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
DraI TTTAAA 1 cut(s) 814
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco105I TACGTA 1 cut(s) 1359
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 1235
Eco57I CTGAAG 2 cut(s) 378, 1655
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 1191
ErhI CCWWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 4 cut(s) 592, 1193, 1465, 1496
FaqI GGGAC 1 cut(s) 1221
FatI CATG 4 cut(s) 588, 1189, 1461, 1492
FbaI TGATCA 2 cut(s) 948, 1476
FokI GGATG 7 cut(s) 25, 864, 938, 1198, 1390, 1441, 1625
FspAI RTGCGCAY 1 cut(s) 957
FspBI CTAG 4 cut(s) 248, 969, 1335, 1370
FspI TGCGCA 1 cut(s) 957
GlaI GCGC 4 cut(s) 462, 957, 1563, 1676
GsuI CTGGAG 1 cut(s) 1542
HaeIII GGCC 3 cut(s) 246, 275, 653
HapII CCGG 6 cut(s) 410, 450, 475, 923, 1133, 1451
HgaI GACGC 2 cut(s) 1432, 1520
HhaI GCGC 4 cut(s) 463, 958, 1564, 1677
Hin1I GRCGYC 1 cut(s) 1443
Hin1II CATG 4 cut(s) 592, 1193, 1465, 1496
Hin6I GCGC 4 cut(s) 461, 956, 1562, 1675
HinP1I GCGC 4 cut(s) 461, 956, 1562, 1675
HindIII AAGCTT 1 cut(s) 1299
HinfI GANTC 2 cut(s) 198, 330
HpaII CCGG 6 cut(s) 410, 450, 475, 923, 1133, 1451
HphI GGTGA 2 cut(s) 304, 592
Hpy166II GTNNAC 1 cut(s) 834
Hpy188I TCNGA 5 cut(s) 724, 948, 1072, 1428, 1635
Hpy8I GTNNAC 1 cut(s) 834
HpyAV CCTTC 6 cut(s) 70, 74, 710, 842, 898, 1601
HpyCH4III ACNGT 2 cut(s) 558, 1351
HpyCH4IV ACGT 3 cut(s) 680, 1358, 1542
HpyCH4V TGCA 4 cut(s) 296, 1189, 1459, 1518
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 1456
HpyF3I CTNAG 3 cut(s) 203, 440, 1649
HpySE526I ACGT 3 cut(s) 680, 1358, 1542
Hsp92I GRCGYC 1 cut(s) 1443
Hsp92II CATG 4 cut(s) 592, 1193, 1465, 1496
HspAI GCGC 4 cut(s) 461, 956, 1562, 1675
KroI GCCGGC 2 cut(s) 409, 449
KroNI GCCGGC 2 cut(s) 411, 451
Ksp22I TGATCA 2 cut(s) 948, 1476
Kzo9I GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
LmnI GCTCC 1 cut(s) 1330
LweI GCATC 4 cut(s) 150, 310, 1176, 1183
MaeI CTAG 4 cut(s) 248, 969, 1335, 1370
MaeII ACGT 3 cut(s) 680, 1358, 1542
MaeIII GTNAC 3 cut(s) 278, 931, 1385
MalI GATC 6 cut(s) 118, 551, 950, 1395, 1425, 1478
MboI GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
MboII GAAGA 7 cut(s) 71, 329, 604, 651, 1299, 1444, 1648
MluCI AATT 4 cut(s) 55, 234, 575, 1576
MmeI TCCRAC 2 cut(s) 702, 1518
Mph1103I ATGCAT 1 cut(s) 1191
MroNI GCCGGC 2 cut(s) 409, 449
MroXI GAANNNNTTC 1 cut(s) 643
MseI TTAA 6 cut(s) 501, 663, 749, 813, 825, 1056
MspI CCGG 6 cut(s) 410, 450, 475, 923, 1133, 1451
MspR9I CCNGG 3 cut(s) 291, 923, 1452
MssI GTTTAAAC 1 cut(s) 814
Mva1269I GAATGC 2 cut(s) 1461, 1548
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 2 cut(s) 306, 637
MwoI GCNNNNNNNGC 2 cut(s) 450, 1456
NaeI GCCGGC 2 cut(s) 411, 451
NciI CCSGG 2 cut(s) 923, 1452
NdeII GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
NgoMIV GCCGGC 2 cut(s) 409, 449
NlaIII CATG 4 cut(s) 592, 1193, 1465, 1496
NlaIV GGNNCC 3 cut(s) 1140, 1237, 1332
NmuCI GTSAC 2 cut(s) 278, 931
NruI TCGCGA 1 cut(s) 637
NsbI TGCGCA 1 cut(s) 957
NsiI ATGCAT 1 cut(s) 1191
NspI RCATGY 1 cut(s) 1465
NspV TTCGAA 1 cut(s) 684
PciI ACATGT 1 cut(s) 1461
PcsI WCGNNNNNNNCGW 1 cut(s) 915
PctI GAATGC 2 cut(s) 1461, 1548
PdiI GCCGGC 2 cut(s) 411, 451
PdmI GAANNNNTTC 1 cut(s) 643
PfeI GAWTC 2 cut(s) 198, 330
PflMI CCANNNNNTGG 1 cut(s) 1667
PmeI GTTTAAAC 1 cut(s) 814
Ppu21I YACGTR 1 cut(s) 1359
PscI ACATGT 1 cut(s) 1461
PshBI ATTAAT 1 cut(s) 1056
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 1140, 1237, 1332
PspPI GGNCC 2 cut(s) 651, 1235
PsrI GAACNNNNNNTAC 2 cut(s) 163, 195
RruI TCGCGA 1 cut(s) 637
RsaI GTAC 3 cut(s) 833, 1357, 1523
RsaNI GTAC 3 cut(s) 832, 1356, 1522
SaqAI TTAA 6 cut(s) 501, 663, 749, 813, 825, 1056
Sau3AI GATC 6 cut(s) 116, 549, 948, 1393, 1423, 1476
Sau96I GGNCC 2 cut(s) 651, 1235
ScaI AGTACT 1 cut(s) 1523
ScrFI CCNGG 3 cut(s) 291, 923, 1452
SfaNI GCATC 4 cut(s) 150, 310, 1176, 1183
SfcI CTRYAG 2 cut(s) 334, 1347
SfuI TTCGAA 1 cut(s) 684
SinI GGWCC 1 cut(s) 1235
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
SnaBI TACGTA 1 cut(s) 1359
Sse9I AATT 4 cut(s) 55, 234, 575, 1576
SsiI CCGC 2 cut(s) 304, 1183
SspMI CTAG 4 cut(s) 248, 969, 1335, 1370
StyD4I CCNGG 3 cut(s) 289, 921, 1450
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 558, 1351
TaiI ACGT 3 cut(s) 683, 1361, 1545
TasI AATT 4 cut(s) 55, 234, 575, 1576
TatI WGTACW 1 cut(s) 1521
TfiI GAWTC 2 cut(s) 198, 330
Tru1I TTAA 6 cut(s) 501, 663, 749, 813, 825, 1056
Tru9I TTAA 6 cut(s) 501, 663, 749, 813, 825, 1056
TscAI CASTG 2 cut(s) 220, 283
TseFI GTSAC 2 cut(s) 278, 931
Tsp45I GTSAC 2 cut(s) 278, 931
TspDTI ATGAA 8 cut(s) 605, 722, 812, 900, 917, 996, 1377, 1445
TspGWI ACGGA 2 cut(s) 57, 1297
TspRI CASTG 2 cut(s) 220, 283
Van91I CCANNNNNTGG 1 cut(s) 1667
VpaK11BI GGWCC 1 cut(s) 1235
VspI ATTAAT 1 cut(s) 1056
XceI RCATGY 1 cut(s) 1465
XmaJI CCTAGG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 643
XspI CTAG 4 cut(s) 248, 969, 1335, 1370
ZrmI AGTACT 1 cut(s) 1523
Zsp2I ATGCAT 1 cut(s) 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.