Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G71060 |
| fragaria_vesca | FvH4_4g32230 |
| malus_domestica | MD13G1027000.v1.1 MD16G1030100.v1.1 |
| prunus_persica | Prupe.1G322900_v2.0.a1 |
| pyrus_communis | pycom13g02570 |
| rosa_chinensis | RchiOBHm_Chr4g0440971 |
| rosa_laevigata | RLG00000006135 |
| rosa_multiflora | Rmu_sc0000424.1_g000028 |
| rosa_roxburghii | Rroxscaffold_5G00381830 |
| rosa_rugosa | Rorug04G0329800 |
| rosa_samantha | Rh4BG394900 Rh4CG409800 Rh4DG388100 |
| rosa_wichuraiana | Rw4G032870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 957 |
| Acc36I | ACCTGC | 1 cut(s) | 754 |
| AccB1I | GGYRCC | 1 cut(s) | 1138 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1667 |
| AccII | CGCG | 2 cut(s) | 306, 637 |
| AciI | CCGC | 2 cut(s) | 304, 1183 |
| AclWI | GGATC | 2 cut(s) | 1401, 1431 |
| AcuI | CTGAAG | 2 cut(s) | 378, 1655 |
| AcyI | GRCGYC | 1 cut(s) | 1443 |
| AfaI | GTAC | 3 cut(s) | 833, 1357, 1523 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1667 |
| AflIII | ACRYGT | 1 cut(s) | 1461 |
| AjiI | CACGTC | 1 cut(s) | 1543 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 899, 931 |
| AluBI | AGCT | 8 cut(s) | 378, 439, 519, 539, 968, 1301, 1338, 1485 |
| AluI | AGCT | 8 cut(s) | 378, 439, 519, 539, 968, 1301, 1338, 1485 |
| Alw26I | GTCTC | 3 cut(s) | 11, 611, 671 |
| AlwI | GGATC | 2 cut(s) | 1401, 1431 |
| AoxI | GGCC | 3 cut(s) | 244, 273, 651 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 610, 642, 899, 931 |
| AseI | ATTAAT | 1 cut(s) | 1056 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 643 |
| AspA2I | CCTAGG | 1 cut(s) | 247 |
| AspLEI | GCGC | 4 cut(s) | 463, 958, 1564, 1677 |
| AspS9I | GGNCC | 2 cut(s) | 651, 1235 |
| AsuC2I | CCSGG | 2 cut(s) | 923, 1452 |
| AsuHPI | GGTGA | 2 cut(s) | 304, 592 |
| AsuII | TTCGAA | 1 cut(s) | 684 |
| AvaII | GGWCC | 1 cut(s) | 1235 |
| AvrII | CCTAGG | 1 cut(s) | 247 |
| BanI | GGYRCC | 1 cut(s) | 1138 |
| BbsI | GAAGAC | 1 cut(s) | 1439 |
| BbvCI | CCTCAGC | 1 cut(s) | 203 |
| BccI | CCATC | 9 cut(s) | 46, 59, 199, 236, 377, 380, 685, 846, 1000 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BclI | TGATCA | 2 cut(s) | 948, 1476 |
| BcnI | CCSGG | 2 cut(s) | 923, 1452 |
| BcoDI | GTCTC | 3 cut(s) | 11, 611, 671 |
| BfaI | CTAG | 4 cut(s) | 248, 969, 1335, 1370 |
| BfmI | CTRYAG | 2 cut(s) | 334, 1347 |
| BfuAI | ACCTGC | 1 cut(s) | 754 |
| BlnI | CCTAGG | 1 cut(s) | 247 |
| BlpI | GCTNAGC | 1 cut(s) | 440 |
| BmcAI | AGTACT | 1 cut(s) | 1523 |
| Bme1390I | CCNGG | 3 cut(s) | 291, 923, 1452 |
| Bme18I | GGWCC | 1 cut(s) | 1235 |
| BmgBI | CACGTC | 1 cut(s) | 1543 |
| BmgT120I | GGNCC | 2 cut(s) | 651, 1235 |
| BmiI | GGNNCC | 3 cut(s) | 1140, 1237, 1332 |
| BmrFI | CCNGG | 3 cut(s) | 291, 923, 1452 |
| BmsI | GCATC | 4 cut(s) | 150, 310, 1176, 1183 |
| BpiI | GAAGAC | 1 cut(s) | 1439 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1642, 1674 |
| BpmI | CTGGAG | 1 cut(s) | 1542 |
| Bpu10I | CCTNAGC | 1 cut(s) | 203 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 440 |
| Bpu14I | TTCGAA | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 1 cut(s) | 1115 |
| BpuMI | CCSGG | 2 cut(s) | 923, 1452 |
| Bsa29I | ATCGAT | 1 cut(s) | 372 |
| BsaAI | YACGTR | 1 cut(s) | 1359 |
| BsaHI | GRCGYC | 1 cut(s) | 1443 |
| BsaI | GGTCTC | 1 cut(s) | 11 |
| BsaJI | CCNNGG | 2 cut(s) | 247, 289 |
| BsaWI | WCCGGW | 1 cut(s) | 474 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1069, 1099, 1451, 1481 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1667 |
| Bse118I | RCCGGY | 2 cut(s) | 409, 449 |
| Bse1I | ACTGG | 4 cut(s) | 96, 109, 220, 276 |
| Bse3DI | GCAATG | 1 cut(s) | 451 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseCI | ATCGAT | 1 cut(s) | 372 |
| BseDI | CCNNGG | 2 cut(s) | 247, 289 |
| BseGI | GGATG | 7 cut(s) | 38, 857, 931, 1191, 1383, 1434, 1618 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1667 |
| BseMI | GCAATG | 1 cut(s) | 451 |
| BseMII | CTCAG | 3 cut(s) | 217, 454, 1640 |
| BseNI | ACTGG | 4 cut(s) | 96, 109, 220, 276 |
| BseRI | GAGGAG | 1 cut(s) | 1226 |
| Bsh1236I | CGCG | 2 cut(s) | 306, 637 |
| BshFI | GGCC | 3 cut(s) | 246, 275, 653 |
| BshNI | GGYRCC | 1 cut(s) | 1138 |
| BshVI | ATCGAT | 1 cut(s) | 372 |
| BsiSI | CCGG | 6 cut(s) | 410, 450, 475, 923, 1133, 1451 |
| BslFI | GGGAC | 1 cut(s) | 1221 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1667 |
| BsmAI | GTCTC | 3 cut(s) | 11, 611, 671 |
| BsmBI | CGTCTC | 1 cut(s) | 671 |
| BsmFI | GGGAC | 1 cut(s) | 1221 |
| BsmI | GAATGC | 2 cut(s) | 1461, 1548 |
| BsnI | GGCC | 3 cut(s) | 246, 275, 653 |
| Bso31I | GGTCTC | 1 cut(s) | 11 |
| Bsp119I | TTCGAA | 1 cut(s) | 684 |
| Bsp143I | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 440 |
| Bsp68I | TCGCGA | 1 cut(s) | 637 |
| BspACI | CCGC | 2 cut(s) | 304, 1183 |
| BspANI | GGCC | 3 cut(s) | 246, 275, 653 |
| BspCNI | CTCAG | 3 cut(s) | 216, 453, 1641 |
| BspDI | ATCGAT | 1 cut(s) | 372 |
| BspFNI | CGCG | 2 cut(s) | 306, 637 |
| BspLI | GGNNCC | 3 cut(s) | 1140, 1237, 1332 |
| BspMI | ACCTGC | 1 cut(s) | 754 |
| BspPI | GGATC | 2 cut(s) | 1401, 1431 |
| BspT104I | TTCGAA | 1 cut(s) | 684 |
| BspT107I | GGYRCC | 1 cut(s) | 1138 |
| BspTNI | GGTCTC | 1 cut(s) | 11 |
| BsrDI | GCAATG | 1 cut(s) | 451 |
| BsrFI | RCCGGY | 2 cut(s) | 409, 449 |
| BsrI | ACTGG | 4 cut(s) | 96, 109, 220, 276 |
| BssAI | RCCGGY | 2 cut(s) | 409, 449 |
| BssECI | CCNNGG | 2 cut(s) | 247, 289 |
| BssMI | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| BssNI | GRCGYC | 1 cut(s) | 1443 |
| BssT1I | CCWWGG | 1 cut(s) | 247 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 2 cut(s) | 558, 1351 |
| Bst6I | CTCTTC | 1 cut(s) | 587 |
| BstACI | GRCGYC | 1 cut(s) | 1443 |
| BstBAI | YACGTR | 1 cut(s) | 1359 |
| BstBI | TTCGAA | 1 cut(s) | 684 |
| BstC8I | GCNNGC | 3 cut(s) | 411, 451, 1516 |
| BstDEI | CTNAG | 3 cut(s) | 203, 440, 1649 |
| BstF5I | GGATG | 7 cut(s) | 38, 857, 931, 1191, 1383, 1434, 1618 |
| BstFNI | CGCG | 2 cut(s) | 306, 637 |
| BstHHI | GCGC | 4 cut(s) | 463, 958, 1564, 1677 |
| BstKTI | GATC | 6 cut(s) | 119, 552, 951, 1396, 1426, 1479 |
| BstMAI | GTCTC | 3 cut(s) | 11, 611, 671 |
| BstMBI | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 450, 1456 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 1 cut(s) | 1465 |
| BstSCI | CCNGG | 3 cut(s) | 289, 921, 1450 |
| BstSFI | CTRYAG | 2 cut(s) | 334, 1347 |
| BstSNI | TACGTA | 1 cut(s) | 1359 |
| BstUI | CGCG | 2 cut(s) | 306, 637 |
| BstV2I | GAAGAC | 1 cut(s) | 1439 |
| Bsu15I | ATCGAT | 1 cut(s) | 372 |
| BsuRI | GGCC | 3 cut(s) | 246, 275, 653 |
| BsuTUI | ATCGAT | 1 cut(s) | 372 |
| BtrI | CACGTC | 1 cut(s) | 1543 |
| BtsCI | GGATG | 7 cut(s) | 38, 857, 931, 1191, 1383, 1434, 1618 |
| BtsIMutI | CAGTG | 2 cut(s) | 213, 283 |
| BtuMI | TCGCGA | 1 cut(s) | 637 |
| BveI | ACCTGC | 1 cut(s) | 754 |
| Cac8I | GCNNGC | 3 cut(s) | 411, 451, 1516 |
| CfoI | GCGC | 4 cut(s) | 463, 958, 1564, 1677 |
| Cfr10I | RCCGGY | 2 cut(s) | 409, 449 |
| Cfr13I | GGNCC | 2 cut(s) | 651, 1235 |
| ClaI | ATCGAT | 1 cut(s) | 372 |
| CseI | GACGC | 2 cut(s) | 1432, 1520 |
| Csp6I | GTAC | 3 cut(s) | 832, 1356, 1522 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1102, 1137 |
| CviAII | CATG | 4 cut(s) | 589, 1190, 1462, 1493 |
| CviQI | GTAC | 3 cut(s) | 832, 1356, 1522 |
| DdeI | CTNAG | 3 cut(s) | 203, 440, 1649 |
| DpnI | GATC | 6 cut(s) | 118, 551, 950, 1395, 1425, 1478 |
| DpnII | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| DraI | TTTAAA | 1 cut(s) | 814 |
| Eam1104I | CTCTTC | 1 cut(s) | 587 |
| EarI | CTCTTC | 1 cut(s) | 587 |
| Eco105I | TACGTA | 1 cut(s) | 1359 |
| Eco130I | CCWWGG | 1 cut(s) | 247 |
| Eco31I | GGTCTC | 1 cut(s) | 11 |
| Eco47I | GGWCC | 1 cut(s) | 1235 |
| Eco57I | CTGAAG | 2 cut(s) | 378, 1655 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 1 cut(s) | 247 |
| EcoT22I | ATGCAT | 1 cut(s) | 1191 |
| ErhI | CCWWGG | 1 cut(s) | 247 |
| Esp3I | CGTCTC | 1 cut(s) | 671 |
| FaeI | CATG | 4 cut(s) | 592, 1193, 1465, 1496 |
| FaqI | GGGAC | 1 cut(s) | 1221 |
| FatI | CATG | 4 cut(s) | 588, 1189, 1461, 1492 |
| FbaI | TGATCA | 2 cut(s) | 948, 1476 |
| FokI | GGATG | 7 cut(s) | 25, 864, 938, 1198, 1390, 1441, 1625 |
| FspAI | RTGCGCAY | 1 cut(s) | 957 |
| FspBI | CTAG | 4 cut(s) | 248, 969, 1335, 1370 |
| FspI | TGCGCA | 1 cut(s) | 957 |
| GlaI | GCGC | 4 cut(s) | 462, 957, 1563, 1676 |
| GsuI | CTGGAG | 1 cut(s) | 1542 |
| HaeIII | GGCC | 3 cut(s) | 246, 275, 653 |
| HapII | CCGG | 6 cut(s) | 410, 450, 475, 923, 1133, 1451 |
| HgaI | GACGC | 2 cut(s) | 1432, 1520 |
| HhaI | GCGC | 4 cut(s) | 463, 958, 1564, 1677 |
| Hin1I | GRCGYC | 1 cut(s) | 1443 |
| Hin1II | CATG | 4 cut(s) | 592, 1193, 1465, 1496 |
| Hin6I | GCGC | 4 cut(s) | 461, 956, 1562, 1675 |
| HinP1I | GCGC | 4 cut(s) | 461, 956, 1562, 1675 |
| HindIII | AAGCTT | 1 cut(s) | 1299 |
| HinfI | GANTC | 2 cut(s) | 198, 330 |
| HpaII | CCGG | 6 cut(s) | 410, 450, 475, 923, 1133, 1451 |
| HphI | GGTGA | 2 cut(s) | 304, 592 |
| Hpy166II | GTNNAC | 1 cut(s) | 834 |
| Hpy188I | TCNGA | 5 cut(s) | 724, 948, 1072, 1428, 1635 |
| Hpy8I | GTNNAC | 1 cut(s) | 834 |
| HpyAV | CCTTC | 6 cut(s) | 70, 74, 710, 842, 898, 1601 |
| HpyCH4III | ACNGT | 2 cut(s) | 558, 1351 |
| HpyCH4IV | ACGT | 3 cut(s) | 680, 1358, 1542 |
| HpyCH4V | TGCA | 4 cut(s) | 296, 1189, 1459, 1518 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 450, 1456 |
| HpyF3I | CTNAG | 3 cut(s) | 203, 440, 1649 |
| HpySE526I | ACGT | 3 cut(s) | 680, 1358, 1542 |
| Hsp92I | GRCGYC | 1 cut(s) | 1443 |
| Hsp92II | CATG | 4 cut(s) | 592, 1193, 1465, 1496 |
| HspAI | GCGC | 4 cut(s) | 461, 956, 1562, 1675 |
| KroI | GCCGGC | 2 cut(s) | 409, 449 |
| KroNI | GCCGGC | 2 cut(s) | 411, 451 |
| Ksp22I | TGATCA | 2 cut(s) | 948, 1476 |
| Kzo9I | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| LmnI | GCTCC | 1 cut(s) | 1330 |
| LweI | GCATC | 4 cut(s) | 150, 310, 1176, 1183 |
| MaeI | CTAG | 4 cut(s) | 248, 969, 1335, 1370 |
| MaeII | ACGT | 3 cut(s) | 680, 1358, 1542 |
| MaeIII | GTNAC | 3 cut(s) | 278, 931, 1385 |
| MalI | GATC | 6 cut(s) | 118, 551, 950, 1395, 1425, 1478 |
| MboI | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| MboII | GAAGA | 7 cut(s) | 71, 329, 604, 651, 1299, 1444, 1648 |
| MluCI | AATT | 4 cut(s) | 55, 234, 575, 1576 |
| MmeI | TCCRAC | 2 cut(s) | 702, 1518 |
| Mph1103I | ATGCAT | 1 cut(s) | 1191 |
| MroNI | GCCGGC | 2 cut(s) | 409, 449 |
| MroXI | GAANNNNTTC | 1 cut(s) | 643 |
| MseI | TTAA | 6 cut(s) | 501, 663, 749, 813, 825, 1056 |
| MspI | CCGG | 6 cut(s) | 410, 450, 475, 923, 1133, 1451 |
| MspR9I | CCNGG | 3 cut(s) | 291, 923, 1452 |
| MssI | GTTTAAAC | 1 cut(s) | 814 |
| Mva1269I | GAATGC | 2 cut(s) | 1461, 1548 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MvnI | CGCG | 2 cut(s) | 306, 637 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 450, 1456 |
| NaeI | GCCGGC | 2 cut(s) | 411, 451 |
| NciI | CCSGG | 2 cut(s) | 923, 1452 |
| NdeII | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| NgoMIV | GCCGGC | 2 cut(s) | 409, 449 |
| NlaIII | CATG | 4 cut(s) | 592, 1193, 1465, 1496 |
| NlaIV | GGNNCC | 3 cut(s) | 1140, 1237, 1332 |
| NmuCI | GTSAC | 2 cut(s) | 278, 931 |
| NruI | TCGCGA | 1 cut(s) | 637 |
| NsbI | TGCGCA | 1 cut(s) | 957 |
| NsiI | ATGCAT | 1 cut(s) | 1191 |
| NspI | RCATGY | 1 cut(s) | 1465 |
| NspV | TTCGAA | 1 cut(s) | 684 |
| PciI | ACATGT | 1 cut(s) | 1461 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 915 |
| PctI | GAATGC | 2 cut(s) | 1461, 1548 |
| PdiI | GCCGGC | 2 cut(s) | 411, 451 |
| PdmI | GAANNNNTTC | 1 cut(s) | 643 |
| PfeI | GAWTC | 2 cut(s) | 198, 330 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1667 |
| PmeI | GTTTAAAC | 1 cut(s) | 814 |
| Ppu21I | YACGTR | 1 cut(s) | 1359 |
| PscI | ACATGT | 1 cut(s) | 1461 |
| PshBI | ATTAAT | 1 cut(s) | 1056 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 3 cut(s) | 1140, 1237, 1332 |
| PspPI | GGNCC | 2 cut(s) | 651, 1235 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 163, 195 |
| RruI | TCGCGA | 1 cut(s) | 637 |
| RsaI | GTAC | 3 cut(s) | 833, 1357, 1523 |
| RsaNI | GTAC | 3 cut(s) | 832, 1356, 1522 |
| SaqAI | TTAA | 6 cut(s) | 501, 663, 749, 813, 825, 1056 |
| Sau3AI | GATC | 6 cut(s) | 116, 549, 948, 1393, 1423, 1476 |
| Sau96I | GGNCC | 2 cut(s) | 651, 1235 |
| ScaI | AGTACT | 1 cut(s) | 1523 |
| ScrFI | CCNGG | 3 cut(s) | 291, 923, 1452 |
| SfaNI | GCATC | 4 cut(s) | 150, 310, 1176, 1183 |
| SfcI | CTRYAG | 2 cut(s) | 334, 1347 |
| SfuI | TTCGAA | 1 cut(s) | 684 |
| SinI | GGWCC | 1 cut(s) | 1235 |
| SmlI | CTYRAG | 1 cut(s) | 1094 |
| SmoI | CTYRAG | 1 cut(s) | 1094 |
| SnaBI | TACGTA | 1 cut(s) | 1359 |
| Sse9I | AATT | 4 cut(s) | 55, 234, 575, 1576 |
| SsiI | CCGC | 2 cut(s) | 304, 1183 |
| SspMI | CTAG | 4 cut(s) | 248, 969, 1335, 1370 |
| StyD4I | CCNGG | 3 cut(s) | 289, 921, 1450 |
| StyI | CCWWGG | 1 cut(s) | 247 |
| TaaI | ACNGT | 2 cut(s) | 558, 1351 |
| TaiI | ACGT | 3 cut(s) | 683, 1361, 1545 |
| TasI | AATT | 4 cut(s) | 55, 234, 575, 1576 |
| TatI | WGTACW | 1 cut(s) | 1521 |
| TfiI | GAWTC | 2 cut(s) | 198, 330 |
| Tru1I | TTAA | 6 cut(s) | 501, 663, 749, 813, 825, 1056 |
| Tru9I | TTAA | 6 cut(s) | 501, 663, 749, 813, 825, 1056 |
| TscAI | CASTG | 2 cut(s) | 220, 283 |
| TseFI | GTSAC | 2 cut(s) | 278, 931 |
| Tsp45I | GTSAC | 2 cut(s) | 278, 931 |
| TspDTI | ATGAA | 8 cut(s) | 605, 722, 812, 900, 917, 996, 1377, 1445 |
| TspGWI | ACGGA | 2 cut(s) | 57, 1297 |
| TspRI | CASTG | 2 cut(s) | 220, 283 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1667 |
| VpaK11BI | GGWCC | 1 cut(s) | 1235 |
| VspI | ATTAAT | 1 cut(s) | 1056 |
| XceI | RCATGY | 1 cut(s) | 1465 |
| XmaJI | CCTAGG | 1 cut(s) | 247 |
| XmnI | GAANNNNTTC | 1 cut(s) | 643 |
| XspI | CTAG | 4 cut(s) | 248, 969, 1335, 1370 |
| ZrmI | AGTACT | 1 cut(s) | 1523 |
| Zsp2I | ATGCAT | 1 cut(s) | 1191 |