AT1G71190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010190
Physical Location & Seq
Reverse (-)
26833406 .. 26835060
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71190.1

Sequence Viewer

Length: 846 bp
ATGAAGAAGCGAACGATGTCCGCGTGGGGATCGGCGATTTTAATCTTCATAATACTTATGATCGTCACTCCCACAATCCCTCAATCTCAGGCTTACCACAATTTCGCCGATCAACGCTCCTTCCTCGGGATTCCAAATTTTTTAAACGTCATCTCCAACTTCCCTTTCCTCATCATCGGCCTTATTGGTCTTATCCTCTGCTTTTACCCAGAAGATTACTTTAGCTTTAGTTTGCGAGGTGAGAAAATAGGATGGACTTGCTTTTACATCGGTGTAGCTGCTGTTGCTTTTGGATCTTCTTACTATCATCTTCACCCAAACGATGCTACTCTCCTCTGGGATCGTCTTCCCATGACTATTGCTTTCACATCAATCATGGCTATATTTGTAATCGAGAGGATTGATGAGCATAAGGGTACTTACTCCATTGCTCCTTTACTTCTTGCTGGTCTTGTTAGCATTTTGTATTGGAGGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGTTTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATTCCACTTATTGGCTATGGGCTGCAGGGTTCTATCTCTTAGCCAAGGTGGAAGAAGCTGCGGATAAGCCTATATATAGCTGGACTCATCATATTATTAGTGGGCATTCTCTGAAGCATCTGTGTGCCGCTATGGTCCCTGTCTTCCTTACCCTCATGCTTGCGAAAAGAACCGTTCAAACTGAGAGGATTAGCTTGTATAAGACATGGAAGAAAGGATCCGAGGAAGAACGGTTCGAGCATAGCTACTCCAACGTTGCAGTCGAAGAGACTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

281

Amino Acids

32.24

Weight (kDa)

7.73

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ceramidase PF05875 46 - 164 4.7e-08 Ceramidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71190 AT1G71190
fragaria_vesca FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250
malus_domestica MD08G1233100.v1.1
prunus_persica Prupe.1G571000_v2.0.a1
pyrus_communis pycom08g20200
rosa_chinensis RchiOBHm_Chr7g0222011
rosa_laevigata RLG00000002103
rosa_multiflora Rmu_sc0004325.1_g000004
rosa_roxburghii Rroxscaffold_3G00237500
rosa_rugosa Rorug07G0204900 Rorug07G0205000
rosa_samantha Rh7AG345500 Rh7BG336000 Rh7CG363200 Rh7DG343800
rosa_wichuraiana Rw7G029300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 579
AccI GTMKAC 1 cut(s) 563
AccII CGCG 1 cut(s) 23
AciI CCGC 3 cut(s) 21, 629, 696
AclI AACGTT 1 cut(s) 822
AclWI GGATC 5 cut(s) 37, 301, 348, 780, 793
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 701
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 126, 579
AgsI TTSAA 1 cut(s) 746
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 6 cut(s) 225, 278, 626, 648, 762, 813
AluI AGCT 6 cut(s) 225, 278, 626, 648, 762, 813
Alw26I GTCTC 1 cut(s) 830
AlwI GGATC 5 cut(s) 37, 301, 348, 780, 793
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 2 cut(s) 178, 491
ApeKI GCWGC 3 cut(s) 278, 590, 626
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 2 cut(s) 251, 305
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 703
AxyI CCTNAGG 1 cut(s) 488
BamHI GGATCC 1 cut(s) 785
BbsI GAAGAC 2 cut(s) 338, 703
BbvI GCAGC 3 cut(s) 265, 577, 613
BccI CCATC 2 cut(s) 246, 532
BcoDI GTCTC 1 cut(s) 830
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 4 cut(s) 279, 591, 627, 696
BlsI GCNGC 4 cut(s) 280, 592, 628, 697
Bme18I GGWCC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 705, 787
BmsI GCATC 2 cut(s) 313, 694
BpiI GAAGAC 2 cut(s) 338, 703
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 124, 612, 789
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 579
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 3 cut(s) 124, 612, 789
BseGI GGATG 1 cut(s) 257
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 126, 579
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 101, 741
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 3 cut(s) 265, 577, 613
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 180, 493
BsiHKCI CYCGRG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 2 cut(s) 126, 579
BsmAI GTCTC 1 cut(s) 830
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 2 cut(s) 180, 493
BsoBI CYCGRG 1 cut(s) 125
Bsp143I GATC 6 cut(s) 29, 60, 109, 293, 340, 785
BspACI CCGC 3 cut(s) 21, 629, 696
BspANI GGCC 2 cut(s) 180, 493
BspCNI CTCAG 2 cut(s) 100, 742
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 705, 787
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 5 cut(s) 37, 301, 348, 780, 793
BsrDI GCAATG 1 cut(s) 426
BssECI CCNNGG 3 cut(s) 124, 612, 789
BssMI GATC 6 cut(s) 29, 60, 109, 293, 340, 785
BssNAI GTATAC 1 cut(s) 564
BssT1I CCWWGG 1 cut(s) 612
Bst1107I GTATAC 1 cut(s) 564
Bst4CI ACNGT 2 cut(s) 742, 801
Bst6I CTCTTC 1 cut(s) 828
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 4 cut(s) 87, 488, 607, 750
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 6 cut(s) 32, 63, 112, 296, 343, 788
BstMAI GTCTC 1 cut(s) 830
BstMBI GATC 6 cut(s) 29, 60, 109, 293, 340, 785
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 265, 577, 613
BstV2I GAAGAC 2 cut(s) 338, 703
BstX2I RGATCY 2 cut(s) 293, 785
BstYI RGATCY 2 cut(s) 293, 785
BstZ17I GTATAC 1 cut(s) 564
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 2 cut(s) 180, 493
BtsCI GGATG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 729
Cfr13I GGNCC 1 cut(s) 703
Csp6I GTAC 1 cut(s) 417
CviAII CATG 4 cut(s) 352, 376, 724, 774
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 4 cut(s) 87, 488, 607, 750
DpnI GATC 6 cut(s) 31, 62, 111, 295, 342, 787
DpnII GATC 6 cut(s) 29, 60, 109, 293, 340, 785
DraI TTTAAA 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 701
Eco81I CCTNAGG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 4 cut(s) 355, 379, 727, 777
FaqI GGGAC 1 cut(s) 689
FatI CATG 4 cut(s) 351, 375, 723, 773
FauNDI CATATG 1 cut(s) 496
FblI GTMKAC 1 cut(s) 563
Fnu4HI GCNGC 4 cut(s) 279, 591, 627, 696
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 4 cut(s) 279, 591, 627, 696
GluI GCNGC 4 cut(s) 279, 591, 627, 696
HaeIII GGCC 2 cut(s) 180, 493
Hin1II CATG 4 cut(s) 355, 379, 727, 777
HinfI GANTC 4 cut(s) 130, 529, 652, 838
HphI GGTGA 2 cut(s) 251, 305
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 2 cut(s) 681, 790
Hpy188III TCNNGA 2 cut(s) 127, 394
Hpy8I GTNNAC 1 cut(s) 564
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 742, 801
HpyCH4IV ACGT 2 cut(s) 147, 822
HpyCH4V TGCA 3 cut(s) 522, 593, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 4 cut(s) 87, 488, 607, 750
HpySE526I ACGT 2 cut(s) 147, 822
Hsp92II CATG 4 cut(s) 355, 379, 727, 777
Kzo9I GATC 6 cut(s) 29, 60, 109, 293, 340, 785
LmnI GCTCC 2 cut(s) 122, 436
LpnPI CCDG 7 cut(s) 74, 222, 322, 432, 579, 634, 720
Lsp1109I GCAGC 3 cut(s) 265, 577, 613
LweI GCATC 2 cut(s) 313, 694
MaeII ACGT 2 cut(s) 147, 822
MaeIII GTNAC 1 cut(s) 64
MalI GATC 6 cut(s) 31, 62, 111, 295, 342, 787
MboI GATC 6 cut(s) 29, 60, 109, 293, 340, 785
MflI RGATCY 2 cut(s) 293, 785
MluCI AATT 2 cut(s) 100, 136
MlyI GAGTC 2 cut(s) 646, 832
MmeI TCCRAC 2 cut(s) 180, 843
MseI TTAA 2 cut(s) 41, 143
MslI CAYNNNNRTG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 673
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeI CATATG 1 cut(s) 496
NdeII GATC 6 cut(s) 29, 60, 109, 293, 340, 785
NlaIII CATG 4 cut(s) 355, 379, 727, 777
NlaIV GGNNCC 2 cut(s) 705, 787
NmuCI GTSAC 1 cut(s) 64
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 828
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 2 cut(s) 130, 529
PflMI CCANNNNNTGG 1 cut(s) 579
PkrI GCNGC 4 cut(s) 280, 592, 628, 697
PleI GAGTC 2 cut(s) 646, 832
PpsI GAGTC 2 cut(s) 646, 832
Psp1406I AACGTT 1 cut(s) 822
PspN4I GGNNCC 2 cut(s) 705, 787
PspPI GGNCC 1 cut(s) 703
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 2 cut(s) 293, 785
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 2 cut(s) 41, 143
SatI GCNGC 4 cut(s) 279, 591, 627, 696
Sau3AI GATC 6 cut(s) 29, 60, 109, 293, 340, 785
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 2 cut(s) 646, 832
SfaNI GCATC 2 cut(s) 313, 694
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 690
Sse9I AATT 2 cut(s) 100, 136
SsiI CCGC 3 cut(s) 21, 629, 696
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 742, 801
TaiI ACGT 2 cut(s) 150, 825
TaqI TCGA 4 cut(s) 393, 480, 804, 831
TasI AATT 2 cut(s) 100, 136
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 2 cut(s) 130, 529
Tru1I TTAA 2 cut(s) 41, 143
Tru9I TTAA 2 cut(s) 41, 143
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 278, 590, 626
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 17, 37
TspGWI ACGGA 1 cut(s) 522
Van91I CCANNNNNTGG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 703
XapI RAATTY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.