RLG00000002103

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010190
Physical Location & Seq
Reverse (-)
25500724 .. 25511893
11170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002103

Sequence Viewer

Length: 1119 bp
ATGAGTATGAACCAGACAGCTGGGCTGAAGGAGATGGAGAGCAGCTACGAGAGGGTTTTGGATGAGAATTGTAGGGTTTTCAGTGAGTATTTCAGGGAGGTTTTGGAGAATAAAGATGGAGGAAGAGTGATTGATCCACTGGCCGTGGTGTTGGAATTGAGTGAAGGAAGTGATGAGTTCCGGTATGATGATCGGAACACCGGAGAAGATGAAGGTCGGAAAGCTCAATCATCTGAACCACCGCCGCCTTCGGAAGCTCGATCTCTCAACTCCAGGGATAATAATTGGAAGAACATGAAGAAGAGAACGATGTACGCCTGGGGACTGGCCCTCCTCTGCTTTGTGGTGCTGATGATCGTCACTCCTGCCATCCCTCAGTCTCAAGCTTACCATGATTTCGCTGATAAGCGCGAGTTTTTCGGTATTCCAAATACCCTTAATGTGATTTCAAATTTCCCTTTCCTGGTCGTTGGTATCATTGGTCTCGTCCTTTGCTATTATGGGAACTATATGAAGCTCAGCTTGCAAGGTGAGCTTTGGGGTTGGACATGTTTCTACCTTGGTGTGGCTGCTGTTGGGATTGGATCCTCATATTATCATCTTAACCCAAATGACGATACTCTAGTGTGGGATCGCTTGCCTTACCTCATTCCTTTATATTATGATGGCCACTCTTTCCTAAGCTGTATTTACACTGTAGAGGAACTAGTTGTAATCATGAAATTTTTTGATGACCTCCGCCCATATGCTCTGATCCAGTTTCTTCCTTGCATTGCCATTCCCCTGATGGCTATCTTGTTGCCCCCTATGTACACACATTCCACATATTGGCTTTGGGCAGCAGTGTTTTATCTTTTAGCCAAGGTGGAAGAAGCTGGTGATAAAGTGATCTACAAATGGACATATCATATTGTTAGCGGGCACACCCTTAAGCATCTGTGCGCCGCAATGGTTCCTGTCTTCTTGACGCTTATGCTTGCAAAGAGAACTATTGAAACAGAGAGGCAAAGTTTGCTCAAGATTTGGAAGGTTTCCTGGACTGAGTATAGAAAGAAGGGTAATGACACGGTGGTAGAGAGTTACACCTATACTACTGTTCCGGTTGTGGAATCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

373

Amino Acids

42.82

Weight (kDa)

5.38

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71190 AT1G71190
fragaria_vesca FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250
malus_domestica MD08G1233100.v1.1
prunus_persica Prupe.1G571000_v2.0.a1
pyrus_communis pycom08g20200
rosa_chinensis RchiOBHm_Chr7g0222011
rosa_laevigata RLG00000002103
rosa_multiflora Rmu_sc0004325.1_g000004
rosa_roxburghii Rroxscaffold_3G00237500
rosa_rugosa Rorug07G0204900 Rorug07G0205000
rosa_samantha Rh7AG345500 Rh7BG336000 Rh7CG363200 Rh7DG343800
rosa_wichuraiana Rw7G029300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 828
AccII CGCG 1 cut(s) 411
AciI CCGC 5 cut(s) 242, 245, 739, 918, 945
AclWI GGATC 5 cut(s) 128, 579, 592, 639, 748
AcoI YGGCCR 2 cut(s) 141, 667
AcsI RAATTY 2 cut(s) 451, 722
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 314, 812
AfiI CCNNNNNNNGG 3 cut(s) 463, 565, 828
AflII CTTAAG 1 cut(s) 929
AflIII ACRYGT 1 cut(s) 548
AgsI TTSAA 2 cut(s) 450, 995
AhlI ACTAGT 1 cut(s) 706
AjnI CCWGG 4 cut(s) 272, 317, 462, 1034
Alw26I GTCTC 2 cut(s) 384, 488
AlwI GGATC 5 cut(s) 128, 579, 592, 639, 748
AoxI GGCC 3 cut(s) 141, 327, 667
ApeKI GCWGC 3 cut(s) 42, 569, 839
ApoI RAATTY 2 cut(s) 451, 722
AspLEI GCGC 2 cut(s) 411, 944
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 542, 890
BaeGI GKGCMC 1 cut(s) 924
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BalI TGGCCA 1 cut(s) 669
BamHI GGATCC 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 952
BbvI GCAGC 3 cut(s) 54, 556, 851
BccI CCATC 5 cut(s) 28, 110, 377, 659, 781
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 4 cut(s) 274, 319, 464, 1036
BcoDI GTCTC 2 cut(s) 384, 488
BcuI ACTAGT 1 cut(s) 706
BfaI CTAG 2 cut(s) 623, 707
BfmI CTRYAG 1 cut(s) 696
BfrI CTTAAG 1 cut(s) 929
BisI GCNGC 5 cut(s) 43, 245, 570, 840, 945
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 5 cut(s) 44, 246, 571, 841, 946
Bme1390I CCNGG 4 cut(s) 274, 319, 464, 1036
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 586, 954
BmrFI CCNGG 4 cut(s) 274, 319, 464, 1036
BmsI GCATC 1 cut(s) 943
BpiI GAAGAC 1 cut(s) 952
BpmI CTGGAG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 680
Bpu1102I GCTNAGC 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 366, 1001
BsaBI GATNNNNATC 1 cut(s) 791
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 5 cut(s) 144, 273, 318, 559, 861
BsaWI WCCGGW 3 cut(s) 180, 200, 1099
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 565, 828
Bse1I ACTGG 3 cut(s) 144, 330, 757
Bse3DI GCAATG 2 cut(s) 771, 954
Bse8I GATNNNNATC 1 cut(s) 791
BseBI CCWGG 4 cut(s) 274, 319, 464, 1036
BseDI CCNNGG 5 cut(s) 144, 273, 318, 559, 861
BseGI GGATG 2 cut(s) 67, 369
BseJI GATNNNNATC 1 cut(s) 791
BseLI CCNNNNNNNGG 3 cut(s) 463, 565, 828
BseMI GCAATG 2 cut(s) 771, 954
BseMII CTCAG 3 cut(s) 389, 532, 1032
BseNI ACTGG 3 cut(s) 144, 330, 757
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 924
BseXI GCAGC 3 cut(s) 54, 556, 851
BseYI CCCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 3 cut(s) 143, 329, 669
BsiSI CCGG 3 cut(s) 181, 201, 1100
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 3 cut(s) 463, 565, 828
BsmAI GTCTC 2 cut(s) 384, 488
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 3 cut(s) 143, 329, 669
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 924
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
Bsp1720I GCTNAGC 1 cut(s) 518
BspACI CCGC 5 cut(s) 242, 245, 739, 918, 945
BspANI GGCC 3 cut(s) 143, 329, 669
BspCNI CTCAG 3 cut(s) 388, 531, 1033
BspFNI CGCG 1 cut(s) 411
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 586, 954
BspPI GGATC 5 cut(s) 128, 579, 592, 639, 748
BspTI CTTAAG 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 2 cut(s) 771, 954
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 3 cut(s) 144, 330, 757
BssECI CCNNGG 5 cut(s) 144, 273, 318, 559, 861
BssMI GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
BssT1I CCWWGG 2 cut(s) 559, 861
Bst2UI CCWGG 4 cut(s) 274, 319, 464, 1036
Bst4CI ACNGT 3 cut(s) 697, 1069, 1096
Bst6I CTCTTC 2 cut(s) 118, 296
BstAFI CTTAAG 1 cut(s) 929
BstAPI GCANNNNNTGC 1 cut(s) 1012
BstAUI TGTACA 1 cut(s) 810
BstC8I GCNNGC 4 cut(s) 524, 638, 920, 978
BstDEI CTNAG 4 cut(s) 375, 518, 680, 1041
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 67, 369
BstFNI CGCG 1 cut(s) 411
BstHHI GCGC 2 cut(s) 411, 944
BstKTI GATC 8 cut(s) 136, 193, 263, 357, 587, 634, 756, 891
BstMAI GTCTC 2 cut(s) 384, 488
BstMBI GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
BstMWI GCNNNNNNNGC 3 cut(s) 523, 532, 1012
BstNI CCWGG 4 cut(s) 274, 319, 464, 1036
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 4 cut(s) 272, 317, 462, 1034
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 924
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 3 cut(s) 54, 556, 851
BstV2I GAAGAC 1 cut(s) 952
BstX2I RGATCY 1 cut(s) 584
BstXI CCANNNNNNTGG 1 cut(s) 20
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 3 cut(s) 143, 329, 669
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 67, 369
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 4 cut(s) 88, 137, 693, 849
Cac8I GCNNGC 4 cut(s) 524, 638, 920, 978
CciI TCATGA 1 cut(s) 717
CfoI GCGC 2 cut(s) 411, 944
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 1 cut(s) 976
Csp6I GTAC 2 cut(s) 313, 811
CviAII CATG 4 cut(s) 295, 392, 549, 718
CviQI GTAC 2 cut(s) 313, 811
DdeI CTNAG 4 cut(s) 375, 518, 680, 1041
DpnI GATC 8 cut(s) 135, 192, 262, 356, 586, 633, 755, 890
DpnII GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
EaeI YGGCCR 2 cut(s) 141, 667
Eam1104I CTCTTC 2 cut(s) 118, 296
EarI CTCTTC 2 cut(s) 118, 296
EciI GGCGGA 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 559, 861
Eco31I GGTCTC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 4 cut(s) 272, 317, 462, 1034
EcoT14I CCWWGG 2 cut(s) 559, 861
ErhI CCWWGG 2 cut(s) 559, 861
FaeI CATG 4 cut(s) 298, 395, 552, 721
FalI AAGNNNNNCTT 4 cut(s) 506, 538, 519, 551
FaqI GGGAC 1 cut(s) 336
FatI CATG 4 cut(s) 294, 391, 548, 717
FauI CCCGC 1 cut(s) 911
FauNDI CATATG 1 cut(s) 745
Fnu4HI GCNGC 5 cut(s) 43, 245, 570, 840, 945
FokI GGATG 2 cut(s) 74, 356
Fsp4HI GCNGC 5 cut(s) 43, 245, 570, 840, 945
FspBI CTAG 2 cut(s) 623, 707
GlaI GCGC 2 cut(s) 410, 943
GluI GCNGC 5 cut(s) 43, 245, 570, 840, 945
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 3 cut(s) 143, 329, 669
HapII CCGG 3 cut(s) 181, 201, 1100
HgaI GACGC 1 cut(s) 976
HhaI GCGC 2 cut(s) 411, 944
Hin1II CATG 4 cut(s) 298, 395, 552, 721
Hin6I GCGC 2 cut(s) 409, 942
HinP1I GCGC 2 cut(s) 409, 942
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 1 cut(s) 1109
HpaII CCGG 3 cut(s) 181, 201, 1100
HphI GGTGA 2 cut(s) 542, 890
Hpy166II GTNNAC 1 cut(s) 813
Hpy188I TCNGA 5 cut(s) 195, 219, 235, 253, 753
Hpy188III TCNNGA 3 cut(s) 718, 964, 1018
Hpy8I GTNNAC 1 cut(s) 813
HpyAV CCTTC 6 cut(s) 22, 158, 206, 258, 1021, 1048
HpyCH4III ACNGT 3 cut(s) 697, 1069, 1096
HpyCH4V TGCA 3 cut(s) 526, 771, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 523, 532, 1012
HpyF3I CTNAG 4 cut(s) 375, 518, 680, 1041
Hsp92II CATG 4 cut(s) 298, 395, 552, 721
HspAI GCGC 2 cut(s) 409, 942
Kzo9I GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
Lsp1109I GCAGC 3 cut(s) 54, 556, 851
LweI GCATC 1 cut(s) 943
MaeI CTAG 2 cut(s) 623, 707
MaeIII GTNAC 2 cut(s) 358, 1079
MalI GATC 8 cut(s) 135, 192, 262, 356, 586, 633, 755, 890
MboI GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
MboII GAAGA 8 cut(s) 135, 218, 301, 310, 313, 755, 881, 952
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 924
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 5 cut(s) 67, 155, 283, 451, 722
MluNI TGGCCA 1 cut(s) 669
MmeI TCCRAC 3 cut(s) 132, 197, 524
Mox20I TGGCCA 1 cut(s) 669
MscI TGGCCA 1 cut(s) 669
MseI TTAA 3 cut(s) 438, 603, 930
Msp20I TGGCCA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 3 cut(s) 181, 201, 1100
MspR9I CCNGG 4 cut(s) 274, 319, 464, 1036
MvaI CCWGG 4 cut(s) 274, 319, 464, 1036
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 3 cut(s) 523, 532, 1012
NdeI CATATG 1 cut(s) 745
NdeII GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
NlaIII CATG 4 cut(s) 298, 395, 552, 721
NlaIV GGNNCC 2 cut(s) 586, 954
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 552
PagI TCATGA 1 cut(s) 717
PciI ACATGT 1 cut(s) 548
PfeI GAWTC 1 cut(s) 1109
PflMI CCANNNNNTGG 1 cut(s) 828
PfoI TCCNGGA 1 cut(s) 1034
PkrI GCNGC 5 cut(s) 44, 246, 571, 841, 946
PscI ACATGT 1 cut(s) 548
Psp6I CCWGG 4 cut(s) 272, 317, 462, 1034
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 4 cut(s) 272, 317, 462, 1034
PspN4I GGNNCC 2 cut(s) 586, 954
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 314, 812
RsaNI GTAC 2 cut(s) 313, 811
SaqAI TTAA 3 cut(s) 438, 603, 930
SatI GCNGC 5 cut(s) 43, 245, 570, 840, 945
Sau3AI GATC 8 cut(s) 133, 190, 260, 354, 584, 631, 753, 888
Sau96I GGNCC 1 cut(s) 328
ScrFI CCNGG 4 cut(s) 274, 319, 464, 1036
SduI GDGCHC 1 cut(s) 924
SfaNI GCATC 1 cut(s) 943
SfcI CTRYAG 1 cut(s) 696
SmlI CTYRAG 3 cut(s) 381, 929, 1016
SmoI CTYRAG 3 cut(s) 381, 929, 1016
SpeI ACTAGT 1 cut(s) 706
Sse9I AATT 5 cut(s) 67, 155, 283, 451, 722
SsiI CCGC 5 cut(s) 242, 245, 739, 918, 945
SspMI CTAG 2 cut(s) 623, 707
StyD4I CCNGG 4 cut(s) 272, 317, 462, 1034
StyI CCWWGG 2 cut(s) 559, 861
TaaI ACNGT 3 cut(s) 697, 1069, 1096
TaqI TCGA 1 cut(s) 259
TasI AATT 5 cut(s) 67, 155, 283, 451, 722
TatI WGTACW 1 cut(s) 810
TauI GCSGC 2 cut(s) 247, 947
TfiI GAWTC 1 cut(s) 1109
Tru1I TTAA 3 cut(s) 438, 603, 930
Tru9I TTAA 3 cut(s) 438, 603, 930
TscAI CASTG 4 cut(s) 88, 144, 700, 849
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 3 cut(s) 42, 569, 839
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 5 cut(s) 23, 225, 311, 527, 734
TspRI CASTG 4 cut(s) 88, 144, 700, 849
Van91I CCANNNNNTGG 1 cut(s) 828
Vha464I CTTAAG 1 cut(s) 929
XapI RAATTY 2 cut(s) 451, 722
XceI RCATGY 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XspI CTAG 2 cut(s) 623, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.