Rorug07G0205000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010190
Physical Location & Seq
Reverse (-)
18006051 .. 18006571
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0205000.1

Sequence Viewer

Length: 267 bp
ATGGAGACCAGCAACTGCATGTCGGTGCTGTCATGCGTCAGCACCAACGCCGCCTCCGCCTTCTTCGCCTCACTAGAAAGGTGCTCCTGGATCAATCTCAGCACCACCGATTTCGAAGACGACGACGACAACATCATCTGCGCCGACGACGACCACGGCTCTCTCTTGCTCTCCTCTGGGCCCACTTCAGAGGCCGCCCAGCCCAAGCCCAATCTCAATCTCAATCTCAATCAGCCCGCCCCCGACGCCCACGTGGTCGCCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

88

Amino Acids

9.32

Weight (kDa)

4.05

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71190 AT1G71190
fragaria_vesca FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250
malus_domestica MD08G1233100.v1.1
prunus_persica Prupe.1G571000_v2.0.a1
pyrus_communis pycom08g20200
rosa_chinensis RchiOBHm_Chr7g0222011
rosa_laevigata RLG00000002103
rosa_multiflora Rmu_sc0004325.1_g000004
rosa_roxburghii Rroxscaffold_3G00237500
rosa_rugosa Rorug07G0204900 Rorug07G0205000
rosa_samantha Rh7AG345500 Rh7BG336000 Rh7CG363200 Rh7DG343800
rosa_wichuraiana Rw7G029300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 51, 57, 195, 237
AclWI GGATC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 171
AcvI CACGTG 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 246
AjnI CCWGG 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 86
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 2 cut(s) 179, 192
ApaI GGGCCC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 179, 180
AsuII TTCGAA 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 183
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 74
BisI GCNGC 2 cut(s) 51, 195
BlsI GCNGC 2 cut(s) 52, 196
Bme1390I CCNGG 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 179, 180
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 2 cut(s) 181, 194
BsiHKAI GWGCWC 1 cut(s) 86
BsnI GGCC 2 cut(s) 181, 194
Bsp119I TTCGAA 1 cut(s) 114
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 86, 183
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 4 cut(s) 51, 57, 195, 237
BspANI GGCC 2 cut(s) 181, 194
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 245
BstNI CCWGG 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 181, 194
BtgI CCRYGG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 15
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 179, 180
CseI GACGC 2 cut(s) 25, 254
CviAII CATG 2 cut(s) 19, 33
CviJI RGCY 6 cut(s) 159, 181, 194, 202, 208, 235
CviKI_1 RGCY 6 cut(s) 159, 181, 194, 202, 208, 235
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 2 cut(s) 22, 36
FaiI YATR 2 cut(s) 20, 34
FatI CATG 2 cut(s) 18, 32
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 51, 195
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 51, 195
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 51, 195
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 181, 194
HgaI GACGC 2 cut(s) 25, 254
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 2 cut(s) 22, 36
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 190
Hpy99I CGWCG 5 cut(s) 125, 128, 149, 152, 248
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 245
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 22, 36
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 22, 73, 100, 162, 212
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 252
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 55, 128
MhlI GDGCHC 2 cut(s) 86, 183
MnlI CCTC 4 cut(s) 64, 79, 184, 184
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 245
NdeII GATC 1 cut(s) 90
NlaIII CATG 2 cut(s) 22, 36
NlaIV GGNNCC 1 cut(s) 181
NspI RCATGY 1 cut(s) 22
NspV TTCGAA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 86
PkrI GCNGC 2 cut(s) 52, 196
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 86
PspCI CACGTG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 181
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 2 cut(s) 179, 180
PstNI CAGNNNCTG 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 2 cut(s) 51, 195
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 179, 180
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 86, 183
SetI ASST 3 cut(s) 83, 255, 266
SfuI TTCGAA 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 23
SsiI CCGC 4 cut(s) 51, 57, 195, 237
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 114
TauI GCSGC 2 cut(s) 53, 197
XceI RCATGY 1 cut(s) 22
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.