FvH4_5g29250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010190
Physical Location & Seq
Forward (+)
20285397 .. 20288890
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29250.t4

Sequence Viewer

Length: 867 bp
ATGAGGAAGAGAACGATGTACGGCTGGGGAGTGGCCATCCTCTGCTTTGTGGTGTTGATGATCGTCACTCCTGCCATCCCTCAGTCTCAAGCTTACCATGATTTCGCTGACCAGCGCCACTTTTTCGGTATTCCCAATACCCTTAATGTGATTTCAAATTTCCCTTTCCTGGTCATTGGTCTCATCGGTCTCATCCTTTGCTATTACGGGAACTATATGAAGCTCAGCTTGCAAGGTGAGCTTTGGGGTTGGACATGCTTCTACATTGGTGTGGCTGCTGTTGGGATTGGATCCTCATATTACCATCTTAATCCAAATGACGCTACTCTAGTGTGGGATCGCTTGCCTATGACAATTGCATTCACATCAATCATTGCAATTTTTATCATTGAAAGGATTGATGAGCAGAAGGGAACCATTTCAATTATTCCTCTGCTTTTGGCGGGTGTAATAAGCATATTGTATTGGAGATTTTTTGATGACCTCCGCCCATATGCTCTGGTCCAGTTTCTTCCTTGCATTGCCATTCCTTTGATGGCTATCTTGTTGCCCCCTATGTACACACATTCCACATATTGGCTTTGGGCTGCAGTGTTTTATCTTTTAGCTAAGGTGGAAGAAGCTGGTGATAAAGTGATCTACAAATGGACAAATCATATTGTCAGCGGGCACACCCTTAAGCATCTGTGCGCCGCAATGGTTCCTGTCTTCTTGACGCTTATGCTTGCAAAGAGAACTATTGAAACAGAAAGGCAAAGTTTGCTCAAAATTTGGAAGGTTTCCTGGACTGAATATAGAAAGAAGGATGATGACACGGTGGTAGCAACTTACACCTATGCTACTGTTCCCGTTGTGGAATCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

289

Amino Acids

32.95

Weight (kDa)

8.19

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71190 AT1G71190
fragaria_vesca FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250
malus_domestica MD08G1233100.v1.1
prunus_persica Prupe.1G571000_v2.0.a1
pyrus_communis pycom08g20200
rosa_chinensis RchiOBHm_Chr7g0222011
rosa_laevigata RLG00000002103
rosa_multiflora Rmu_sc0004325.1_g000004
rosa_roxburghii Rroxscaffold_3G00237500
rosa_rugosa Rorug07G0204900 Rorug07G0205000
rosa_samantha Rh7AG345500 Rh7BG336000 Rh7CG363200 Rh7DG343800
rosa_wichuraiana Rw7G029300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 576
AciI CCGC 4 cut(s) 443, 487, 666, 693
AclWI GGATC 3 cut(s) 285, 298, 345
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 2 cut(s) 157, 768
AfaI GTAC 2 cut(s) 20, 560
AfiI CCNNNNNNNGG 2 cut(s) 169, 576
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 4 cut(s) 156, 392, 423, 743
AjnI CCWGG 2 cut(s) 168, 782
AluBI AGCT 6 cut(s) 92, 223, 228, 241, 608, 623
AluI AGCT 6 cut(s) 92, 223, 228, 241, 608, 623
Alw26I GTCTC 3 cut(s) 90, 185, 194
AlwI GGATC 3 cut(s) 285, 298, 345
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 275, 587
ApoI RAATTY 2 cut(s) 157, 768
Asp700I GAANNNNTTC 1 cut(s) 418
AspLEI GCGC 2 cut(s) 117, 692
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 248, 638
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 700
BbvI GCAGC 2 cut(s) 262, 574
BccI CCATC 4 cut(s) 44, 83, 312, 529
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 170, 784
BcoDI GTCTC 3 cut(s) 90, 185, 194
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 677
BisI GCNGC 3 cut(s) 276, 588, 693
BlpI GCTNAGC 1 cut(s) 224
BlsI GCNGC 3 cut(s) 277, 589, 694
Bme1390I CCNGG 2 cut(s) 170, 784
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 3 cut(s) 292, 415, 702
BmrFI CCNGG 2 cut(s) 170, 784
BmsI GCATC 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 700
Bpu10I CCTNAGC 1 cut(s) 609
Bpu1102I GCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 539
BsaI GGTCTC 2 cut(s) 185, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 576
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 3 cut(s) 372, 519, 702
Bse8I GATNNNNATC 1 cut(s) 539
BseBI CCWGG 2 cut(s) 170, 784
BseGI GGATG 4 cut(s) 36, 75, 192, 811
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 2 cut(s) 169, 576
BseMI GCAATG 3 cut(s) 372, 519, 702
BseMII CTCAG 2 cut(s) 95, 238
BseNI ACTGG 1 cut(s) 505
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 2 cut(s) 262, 574
BseYI CCCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 169, 576
BsmAI GTCTC 3 cut(s) 90, 185, 194
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 1 cut(s) 35
Bso31I GGTCTC 2 cut(s) 185, 194
Bsp1286I GDGCHC 1 cut(s) 672
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 4 cut(s) 60, 290, 337, 636
Bsp1720I GCTNAGC 1 cut(s) 224
BspACI CCGC 4 cut(s) 443, 487, 666, 693
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 94, 237
BspLI GGNNCC 3 cut(s) 292, 415, 702
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 3 cut(s) 285, 298, 345
BspTI CTTAAG 1 cut(s) 677
BspTNI GGTCTC 2 cut(s) 185, 194
BsrDI GCAATG 3 cut(s) 372, 519, 702
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 1 cut(s) 505
BssMI GATC 4 cut(s) 60, 290, 337, 636
Bst2UI CCWGG 2 cut(s) 170, 784
Bst4CI ACNGT 2 cut(s) 817, 844
Bst6I CTCTTC 1 cut(s) 2
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 4 cut(s) 230, 344, 668, 726
BstDEI CTNAG 3 cut(s) 81, 224, 609
BstF5I GGATG 4 cut(s) 36, 75, 192, 811
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 692
BstKTI GATC 4 cut(s) 63, 293, 340, 639
BstMAI GTCTC 3 cut(s) 90, 185, 194
BstMBI GATC 4 cut(s) 60, 290, 337, 636
BstMWI GCNNNNNNNGC 3 cut(s) 229, 238, 760
BstNI CCWGG 2 cut(s) 170, 784
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 168, 782
BstSFI CTRYAG 1 cut(s) 588
BstSLI GKGCMC 1 cut(s) 672
BstV1I GCAGC 2 cut(s) 262, 574
BstV2I GAAGAC 1 cut(s) 700
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 4 cut(s) 36, 75, 192, 811
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 4 cut(s) 230, 344, 668, 726
CfoI GCGC 2 cut(s) 117, 692
Cfr13I GGNCC 1 cut(s) 502
CseI GACGC 2 cut(s) 329, 724
Csp6I GTAC 2 cut(s) 19, 559
CviAII CATG 2 cut(s) 98, 255
CviQI GTAC 2 cut(s) 19, 559
DdeI CTNAG 3 cut(s) 81, 224, 609
DpnI GATC 4 cut(s) 62, 292, 339, 638
DpnII GATC 4 cut(s) 60, 290, 337, 636
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
EciI GGCGGA 1 cut(s) 476
Eco31I GGTCTC 2 cut(s) 185, 194
Eco47I GGWCC 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 168, 782
FaeI CATG 2 cut(s) 101, 258
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 225, 257
FatI CATG 2 cut(s) 97, 254
FauI CCCGC 2 cut(s) 436, 659
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 3 cut(s) 276, 588, 693
FokI GGATG 4 cut(s) 23, 62, 179, 818
Fsp4HI GCNGC 3 cut(s) 276, 588, 693
FspBI CTAG 1 cut(s) 329
GlaI GCGC 2 cut(s) 116, 691
GluI GCNGC 3 cut(s) 276, 588, 693
GsaI CCCAGC 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 1 cut(s) 35
HgaI GACGC 2 cut(s) 329, 724
HhaI GCGC 2 cut(s) 117, 692
Hin1II CATG 2 cut(s) 101, 258
Hin6I GCGC 2 cut(s) 115, 690
HinP1I GCGC 2 cut(s) 115, 690
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 1 cut(s) 857
HphI GGTGA 2 cut(s) 248, 638
Hpy166II GTNNAC 1 cut(s) 561
Hpy188III TCNNGA 1 cut(s) 712
Hpy8I GTNNAC 1 cut(s) 561
HpyAV CCTTC 3 cut(s) 403, 769, 796
HpyCH4III ACNGT 2 cut(s) 817, 844
HpyCH4V TGCA 6 cut(s) 232, 359, 377, 519, 590, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 238, 760
HpyF3I CTNAG 3 cut(s) 81, 224, 609
Hsp92II CATG 2 cut(s) 101, 258
HspAI GCGC 2 cut(s) 115, 690
Kzo9I GATC 4 cut(s) 60, 290, 337, 636
Lsp1109I GCAGC 2 cut(s) 262, 574
LweI GCATC 1 cut(s) 691
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 62, 292, 339, 638
MboI GATC 4 cut(s) 60, 290, 337, 636
MboII GAAGA 4 cut(s) 19, 503, 629, 700
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 672
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 5 cut(s) 157, 354, 378, 423, 768
MluNI TGGCCA 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 5 cut(s) 50, 90, 304, 441, 494
Mox20I TGGCCA 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 418
MscI TGGCCA 1 cut(s) 35
MseI TTAA 3 cut(s) 144, 309, 678
MslI CAYNNNNRTG 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 666
MspCI CTTAAG 1 cut(s) 677
MspR9I CCNGG 2 cut(s) 170, 784
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 2 cut(s) 170, 784
MwoI GCNNNNNNNGC 3 cut(s) 229, 238, 760
NdeI CATATG 1 cut(s) 493
NdeII GATC 4 cut(s) 60, 290, 337, 636
NlaIII CATG 2 cut(s) 101, 258
NlaIV GGNNCC 3 cut(s) 292, 415, 702
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 258
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 857
PflMI CCANNNNNTGG 1 cut(s) 576
PfoI TCCNGGA 1 cut(s) 782
PkrI GCNGC 3 cut(s) 277, 589, 694
Psp6I CCWGG 2 cut(s) 168, 782
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 2 cut(s) 168, 782
PspN4I GGNNCC 3 cut(s) 292, 415, 702
PspPI GGNCC 1 cut(s) 502
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 2 cut(s) 20, 560
RsaNI GTAC 2 cut(s) 19, 559
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 3 cut(s) 144, 309, 678
SatI GCNGC 3 cut(s) 276, 588, 693
Sau3AI GATC 4 cut(s) 60, 290, 337, 636
Sau96I GGNCC 1 cut(s) 502
ScrFI CCNGG 2 cut(s) 170, 784
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 87, 677
SmoI CTYRAG 2 cut(s) 87, 677
Sse9I AATT 5 cut(s) 157, 354, 378, 423, 768
SsiI CCGC 4 cut(s) 443, 487, 666, 693
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 168, 782
TaaI ACNGT 2 cut(s) 817, 844
TaqII GACCGA 1 cut(s) 176
TasI AATT 5 cut(s) 157, 354, 378, 423, 768
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 1 cut(s) 857
Tru1I TTAA 3 cut(s) 144, 309, 678
Tru9I TTAA 3 cut(s) 144, 309, 678
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 275, 587
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 597
Van91I CCANNNNNTGG 1 cut(s) 576
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 2 cut(s) 157, 768
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.