Rmu_sc0004325.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004325.1
OG0010190
Physical Location & Seq
Reverse (-)
17183 .. 20173
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004325.1_g000004.1.cds

Sequence Viewer

Length: 999 bp
atgtacgcctggggactggccctcctctgctttgtcgtgctcatgatcgtcactcccgccatccctcagtctcaagcttaccatgatttcgctgataagcgcgagtttttcggtattcccaatacccttaatgtgatttcaaatttccctttcctggtcgttggtatcattggtctcgtcctttgctattatgggaactatatgaagctcagcttgcaaggtgagctttggggttggacatgtttctaccttggtgtggctgctgttgggattggatccgcatattatcatcttaacccaaatgacgctactctagtgtgggatcgcttgcctatgacaattgcattcacatcaatcattgcaattttcatcattgaaaggattgatgagcggaagggaaccatttccattttacctctgcttttggcgggtgtaataagcattttgtattggagattttttgatgacctccgcccatatgctctgatccagtttcttccttgcattgccattcccctgatggctatcttgttgccccctatgtacacacattccacatattggctttgggcagcagtgttttatcttttagccaaggtggaagaagctggtgataaagtgatctacaaatggacatatcatattgttagcgggcacacccttaagcatctgtgcgccgcaatggttcctgtcttcttgacgcttatgcttgcaaagagaactattgaaacagagaggcaaagtttgctcaagatttggaaggtttcctggactgagtatagaaagaagggtaatgacacggtggtagagagttacacctatactactgttccggtcatccaagaaagcctcagcggattgaggtggatgaggttcaaagaagaggactccgcgatcatgatcaagaccagatttggccaaagaatcaggttgagacatgagatgtctggagctaaggacagtggcaccaagaggatgagtttgcacatgacaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

332

Amino Acids

38.15

Weight (kDa)

9.04

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71190 AT1G71190
fragaria_vesca FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250
malus_domestica MD08G1233100.v1.1
prunus_persica Prupe.1G571000_v2.0.a1
pyrus_communis pycom08g20200
rosa_chinensis RchiOBHm_Chr7g0222011
rosa_laevigata RLG00000002103
rosa_multiflora Rmu_sc0004325.1_g000004
rosa_roxburghii Rroxscaffold_3G00237500
rosa_rugosa Rorug07G0204900 Rorug07G0205000
rosa_samantha Rh7AG345500 Rh7BG336000 Rh7CG363200 Rh7DG343800
rosa_wichuraiana Rw7G029300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 965
AccB7I CCANNNNNTGG 1 cut(s) 561
AccBSI CCGCTC 1 cut(s) 391
AccII CGCG 2 cut(s) 102, 893
AciI CCGC 9 cut(s) 57, 279, 391, 428, 472, 651, 678, 855, 891
AclWI GGATC 4 cut(s) 270, 283, 330, 481
AcoI YGGCCR 1 cut(s) 916
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 2 cut(s) 5, 545
AfiI CCNNNNNNNGG 3 cut(s) 154, 256, 561
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 4 cut(s) 141, 377, 728, 877
AjnI CCWGG 3 cut(s) 8, 153, 767
AluBI AGCT 6 cut(s) 77, 208, 213, 226, 608, 953
AluI AGCT 6 cut(s) 77, 208, 213, 226, 608, 953
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 75, 179, 928
AlwI GGATC 4 cut(s) 270, 283, 330, 481
AoxI GGCC 2 cut(s) 18, 916
ApeKI GCWGC 2 cut(s) 260, 572
ApoI RAATTY 1 cut(s) 142
Asp700I GAANNNNTTC 1 cut(s) 403
AspLEI GCGC 2 cut(s) 102, 677
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 233, 623
BaeGI GKGCMC 1 cut(s) 657
BalI TGGCCA 1 cut(s) 918
BamHI GGATCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 965
BbsI GAAGAC 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 851
BbvI GCAGC 2 cut(s) 247, 584
BccI CCATC 2 cut(s) 68, 514
BciT130I CCWGG 3 cut(s) 10, 155, 769
BclI TGATCA 1 cut(s) 900
BcoDI GTCTC 3 cut(s) 75, 179, 928
BfaI CTAG 1 cut(s) 314
BfrI CTTAAG 1 cut(s) 662
BisI GCNGC 3 cut(s) 261, 573, 678
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 3 cut(s) 262, 574, 679
Bme1390I CCNGG 3 cut(s) 10, 155, 769
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 4 cut(s) 277, 400, 687, 967
BmrFI CCNGG 3 cut(s) 10, 155, 769
BmsI GCATC 1 cut(s) 676
BpiI GAAGAC 1 cut(s) 685
BpmI CTGGAG 1 cut(s) 969
Bpu10I CCTNAGC 2 cut(s) 851, 954
Bpu1102I GCTNAGC 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 57, 734
BsaBI GATNNNNATC 2 cut(s) 524, 899
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 9, 250, 594
BsaWI WCCGGW 1 cut(s) 832
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 256, 561
Bse1I ACTGG 2 cut(s) 21, 490
Bse3DI GCAATG 3 cut(s) 357, 504, 687
Bse8I GATNNNNATC 2 cut(s) 524, 899
BseBI CCWGG 3 cut(s) 10, 155, 769
BseDI CCNNGG 3 cut(s) 9, 250, 594
BseGI GGATG 4 cut(s) 60, 837, 873, 981
BseJI GATNNNNATC 2 cut(s) 524, 899
BseLI CCNNNNNNNGG 3 cut(s) 154, 256, 561
BseMI GCAATG 3 cut(s) 357, 504, 687
BseMII CTCAG 4 cut(s) 80, 223, 765, 865
BseNI ACTGG 2 cut(s) 21, 490
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 657
BseXI GCAGC 2 cut(s) 247, 584
Bsh1236I CGCG 2 cut(s) 102, 893
BshFI GGCC 2 cut(s) 20, 918
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 833
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 3 cut(s) 154, 256, 561
BsmAI GTCTC 3 cut(s) 75, 179, 928
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 20, 918
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 42, 657
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 9 cut(s) 57, 279, 391, 428, 472, 651, 678, 855, 891
BspANI GGCC 2 cut(s) 20, 918
BspCNI CTCAG 4 cut(s) 79, 222, 766, 864
BspFNI CGCG 2 cut(s) 102, 893
BspHI TCATGA 2 cut(s) 42, 897
BspLI GGNNCC 4 cut(s) 277, 400, 687, 967
BspPI GGATC 4 cut(s) 270, 283, 330, 481
BspT107I GGYRCC 1 cut(s) 965
BspTI CTTAAG 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 391
BsrDI GCAATG 3 cut(s) 357, 504, 687
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 21, 490
BssECI CCNNGG 3 cut(s) 9, 250, 594
BssMI GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
BssT1I CCWWGG 2 cut(s) 250, 594
Bst2UI CCWGG 3 cut(s) 10, 155, 769
Bst4CI ACNGT 3 cut(s) 802, 829, 962
Bst6I CTCTTC 1 cut(s) 876
BstAFI CTTAAG 1 cut(s) 662
BstAPI GCANNNNNTGC 1 cut(s) 745
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 4 cut(s) 215, 329, 653, 711
BstDEI CTNAG 5 cut(s) 66, 209, 774, 851, 954
BstF5I GGATG 4 cut(s) 60, 837, 873, 981
BstFNI CGCG 2 cut(s) 102, 893
BstHHI GCGC 2 cut(s) 102, 677
BstKTI GATC 7 cut(s) 48, 278, 325, 489, 624, 897, 903
BstMAI GTCTC 3 cut(s) 75, 179, 928
BstMBI GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
BstMWI GCNNNNNNNGC 3 cut(s) 214, 223, 745
BstNI CCWGG 3 cut(s) 10, 155, 769
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 3 cut(s) 8, 153, 767
BstSLI GKGCMC 1 cut(s) 657
BstUI CGCG 2 cut(s) 102, 893
BstV1I GCAGC 2 cut(s) 247, 584
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 2 cut(s) 20, 918
BtsCI GGATG 4 cut(s) 60, 837, 873, 981
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 582, 967
Cac8I GCNNGC 4 cut(s) 215, 329, 653, 711
CciI TCATGA 2 cut(s) 42, 897
CfoI GCGC 2 cut(s) 102, 677
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 2 cut(s) 314, 709
Csp6I GTAC 2 cut(s) 4, 544
CviAII CATG 6 cut(s) 43, 83, 240, 898, 938, 988
CviQI GTAC 2 cut(s) 4, 544
DdeI CTNAG 5 cut(s) 66, 209, 774, 851, 954
DpnI GATC 7 cut(s) 47, 277, 324, 488, 623, 896, 902
DpnII GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
EaeI YGGCCR 1 cut(s) 916
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
EciI GGCGGA 1 cut(s) 461
Eco130I CCWWGG 2 cut(s) 250, 594
Eco31I GGTCTC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 8, 153, 767
EcoT14I CCWWGG 2 cut(s) 250, 594
ErhI CCWWGG 2 cut(s) 250, 594
FaeI CATG 6 cut(s) 46, 86, 243, 901, 941, 991
FalI AAGNNNNNCTT 4 cut(s) 197, 229, 210, 242
FaqI GGGAC 1 cut(s) 27
FatI CATG 6 cut(s) 42, 82, 239, 897, 937, 987
FauI CCCGC 3 cut(s) 64, 421, 644
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 900
Fnu4HI GCNGC 3 cut(s) 261, 573, 678
FokI GGATG 4 cut(s) 47, 824, 880, 988
Fsp4HI GCNGC 3 cut(s) 261, 573, 678
FspBI CTAG 1 cut(s) 314
GlaI GCGC 2 cut(s) 101, 676
GluI GCNGC 3 cut(s) 261, 573, 678
GsuI CTGGAG 1 cut(s) 969
HaeIII GGCC 2 cut(s) 20, 918
HapII CCGG 1 cut(s) 833
HgaI GACGC 2 cut(s) 314, 709
HhaI GCGC 2 cut(s) 102, 677
Hin1II CATG 6 cut(s) 46, 86, 243, 901, 941, 991
Hin6I GCGC 2 cut(s) 100, 675
HinP1I GCGC 2 cut(s) 100, 675
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 2 cut(s) 887, 924
HpaII CCGG 1 cut(s) 833
HphI GGTGA 2 cut(s) 233, 623
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 6 cut(s) 43, 697, 751, 898, 904, 948
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 3 cut(s) 388, 754, 781
HpyCH4III ACNGT 3 cut(s) 802, 829, 962
HpyCH4V TGCA 6 cut(s) 217, 344, 362, 504, 713, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 223, 745
HpyF3I CTNAG 5 cut(s) 66, 209, 774, 851, 954
Hsp92II CATG 6 cut(s) 46, 86, 243, 901, 941, 991
HspAI GCGC 2 cut(s) 100, 675
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
LmnI GCTCC 1 cut(s) 950
Lsp1109I GCAGC 2 cut(s) 247, 584
LweI GCATC 1 cut(s) 676
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 49, 812
MalI GATC 7 cut(s) 47, 277, 324, 488, 623, 896, 902
MbiI CCGCTC 1 cut(s) 391
MboI GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
MboII GAAGA 4 cut(s) 488, 614, 685, 893
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 42, 657
MlsI TGGCCA 1 cut(s) 918
MluCI AATT 4 cut(s) 142, 339, 363, 993
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 1 cut(s) 881
MmeI TCCRAC 1 cut(s) 215
Mox20I TGGCCA 1 cut(s) 918
MroXI GAANNNNTTC 1 cut(s) 403
MscI TGGCCA 1 cut(s) 918
MseI TTAA 4 cut(s) 129, 294, 663, 997
Msp20I TGGCCA 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 855
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 1 cut(s) 833
MspR9I CCNGG 3 cut(s) 10, 155, 769
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 3 cut(s) 10, 155, 769
MvnI CGCG 2 cut(s) 102, 893
MwoI GCNNNNNNNGC 3 cut(s) 214, 223, 745
NdeI CATATG 1 cut(s) 478
NdeII GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
NlaIII CATG 6 cut(s) 46, 86, 243, 901, 941, 991
NlaIV GGNNCC 4 cut(s) 277, 400, 687, 967
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 243
PagI TCATGA 2 cut(s) 42, 897
PciI ACATGT 1 cut(s) 239
PctI GAATGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 924
PflMI CCANNNNNTGG 1 cut(s) 561
PfoI TCCNGGA 1 cut(s) 767
PkrI GCNGC 3 cut(s) 262, 574, 679
PleI GAGTC 1 cut(s) 881
PpsI GAGTC 1 cut(s) 881
PscI ACATGT 1 cut(s) 239
Psp6I CCWGG 3 cut(s) 8, 153, 767
PspGI CCWGG 3 cut(s) 8, 153, 767
PspN4I GGNNCC 4 cut(s) 277, 400, 687, 967
PspPI GGNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 2 cut(s) 5, 545
RsaNI GTAC 2 cut(s) 4, 544
SaqAI TTAA 4 cut(s) 129, 294, 663, 997
SatI GCNGC 3 cut(s) 261, 573, 678
Sau3AI GATC 7 cut(s) 45, 275, 322, 486, 621, 894, 900
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 881
ScrFI CCNGG 3 cut(s) 10, 155, 769
SduI GDGCHC 2 cut(s) 42, 657
SfaNI GCATC 1 cut(s) 676
SmlI CTYRAG 3 cut(s) 72, 662, 749
SmoI CTYRAG 3 cut(s) 72, 662, 749
Sse9I AATT 4 cut(s) 142, 339, 363, 993
SsiI CCGC 9 cut(s) 57, 279, 391, 428, 472, 651, 678, 855, 891
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 3 cut(s) 8, 153, 767
StyI CCWWGG 2 cut(s) 250, 594
TaaI ACNGT 3 cut(s) 802, 829, 962
TasI AATT 4 cut(s) 142, 339, 363, 993
TatI WGTACW 1 cut(s) 543
TauI GCSGC 1 cut(s) 680
TfiI GAWTC 1 cut(s) 924
Tru1I TTAA 4 cut(s) 129, 294, 663, 997
Tru9I TTAA 4 cut(s) 129, 294, 663, 997
TscAI CASTG 2 cut(s) 582, 967
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 260, 572
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 218, 358
TspRI CASTG 2 cut(s) 582, 967
Van91I CCANNNNNTGG 1 cut(s) 561
Vha464I CTTAAG 1 cut(s) 662
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.