Rh7CG363200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010190
Physical Location & Seq
Forward (+)
45078118 .. 45081556
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG363200.1

Sequence Viewer

Length: 651 bp
ATGAAGCTCAGCTTGCAAGGCGAGCTTTGGGGTTGGACATGTTTCTACCTTGGTGTGGCTGCTGTTGGGATTGGATCCTCATATTATCATCTTAACCCAAATGACGCTACTCTAGTGTGGGATCGCTTGCCTATGACAATTGCGTTCACATCAATCATTGCAATTTTCATCATTGAAAGGATTGATGTGCGGAAGGGAACCATTTCCATTTTACCTCTGCTTTTGGCAGGTGTAATAAGCATATTGTATTGGAGATTTTTTGATGACCTCCGCCCATATGCTCTGATCCAGTTTCTTCCTTGCATTGCCATTCCCCTGATGGCTATCTTGTTGCCCCCTATGTACACACATTCCACATATTGGCTTTGGGCAGCAGTGTTTTATCTTTTAGCCAAGGTGGAAGAAGCTGGTGATAAAGTGATCTACAAATGGACATATCATATTGTTAGCGGGCACACCCTTAAGCATCTGTGCGCCGCAATGGTTCCTGTCTTCTTGACGCTTATGCTTGCAAAGAGAACTATTGAAACAGAGAGGCAAAGTTTGCTCAAGATTTGGAAGGTTTCCTGGACTGAGTATAGAAGGAAGGGTAATGACACGGTGGTAGAGAGCTACACCTATACTACTGTTCCGGTTGTGGAATCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

216

Amino Acids

24.84

Weight (kDa)

8.68

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71190 AT1G71190
fragaria_vesca FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250
malus_domestica MD08G1233100.v1.1
prunus_persica Prupe.1G571000_v2.0.a1
pyrus_communis pycom08g20200
rosa_chinensis RchiOBHm_Chr7g0222011
rosa_laevigata RLG00000002103
rosa_multiflora Rmu_sc0004325.1_g000004
rosa_roxburghii Rroxscaffold_3G00237500
rosa_rugosa Rorug07G0204900 Rorug07G0205000
rosa_samantha Rh7AG345500 Rh7BG336000 Rh7CG363200 Rh7DG343800
rosa_wichuraiana Rw7G029300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 360
AciI CCGC 4 cut(s) 190, 271, 450, 477
AclWI GGATC 4 cut(s) 69, 82, 129, 280
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 55, 360
AflII CTTAAG 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 2 cut(s) 176, 527
AjnI CCWGG 1 cut(s) 566
AluBI AGCT 5 cut(s) 7, 12, 25, 407, 612
AluI AGCT 5 cut(s) 7, 12, 25, 407, 612
AlwI GGATC 4 cut(s) 69, 82, 129, 280
ApeKI GCWGC 2 cut(s) 59, 371
Asp700I GAANNNNTTC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 456
BamHI GGATCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 46, 383
BccI CCATC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 568
BfaI CTAG 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 3 cut(s) 60, 372, 477
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 3 cut(s) 61, 373, 478
Bme1390I CCNGG 1 cut(s) 568
BmiI GGNNCC 3 cut(s) 76, 199, 486
BmrFI CCNGG 1 cut(s) 568
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 484
Bpu1102I GCTNAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 49, 393
BsaWI WCCGGW 1 cut(s) 631
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 360
Bse1I ACTGG 1 cut(s) 289
Bse3DI GCAATG 3 cut(s) 156, 303, 486
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 2 cut(s) 49, 393
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 55, 360
BseMI GCAATG 3 cut(s) 156, 303, 486
BseMII CTCAG 2 cut(s) 22, 564
BseNI ACTGG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 2 cut(s) 46, 383
BsiSI CCGG 1 cut(s) 632
BslI CCNNNNNNNGG 2 cut(s) 55, 360
Bsp1286I GDGCHC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 4 cut(s) 74, 121, 285, 420
Bsp1720I GCTNAGC 1 cut(s) 8
BspACI CCGC 4 cut(s) 190, 271, 450, 477
BspCNI CTCAG 2 cut(s) 21, 565
BspLI GGNNCC 3 cut(s) 76, 199, 486
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 4 cut(s) 69, 82, 129, 280
BspTI CTTAAG 1 cut(s) 461
BsrDI GCAATG 3 cut(s) 156, 303, 486
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 49, 393
BssMI GATC 4 cut(s) 74, 121, 285, 420
BssT1I CCWWGG 2 cut(s) 49, 393
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 2 cut(s) 601, 628
BstAFI CTTAAG 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 544
BstAUI TGTACA 1 cut(s) 342
BstC8I GCNNGC 5 cut(s) 14, 23, 128, 452, 510
BstDEI CTNAG 2 cut(s) 8, 573
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 4 cut(s) 77, 124, 288, 423
BstMBI GATC 4 cut(s) 74, 121, 285, 420
BstMWI GCNNNNNNNGC 4 cut(s) 13, 18, 22, 544
BstNI CCWGG 1 cut(s) 568
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 566
BstSLI GKGCMC 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 46, 383
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 5 cut(s) 14, 23, 128, 452, 510
CfoI GCGC 1 cut(s) 476
CseI GACGC 2 cut(s) 113, 508
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 39
CviJI RGCY 9 cut(s) 7, 12, 25, 59, 323, 364, 392, 407, 612
CviKI_1 RGCY 9 cut(s) 7, 12, 25, 59, 323, 364, 392, 407, 612
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 8, 573
DpnI GATC 4 cut(s) 76, 123, 287, 422
DpnII GATC 4 cut(s) 74, 121, 285, 420
EciI GGCGGA 1 cut(s) 260
Eco130I CCWWGG 2 cut(s) 49, 393
EcoRII CCWGG 1 cut(s) 566
EcoT14I CCWWGG 2 cut(s) 49, 393
ErhI CCWWGG 2 cut(s) 49, 393
FaeI CATG 1 cut(s) 42
FalI AAGNNNNNCTT 3 cut(s) 28, 9, 41
FatI CATG 1 cut(s) 38
FauI CCCGC 1 cut(s) 443
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 60, 372, 477
Fsp4HI GCNGC 3 cut(s) 60, 372, 477
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 475
GluI GCNGC 3 cut(s) 60, 372, 477
HapII CCGG 1 cut(s) 632
HgaI GACGC 2 cut(s) 113, 508
HhaI GCGC 1 cut(s) 476
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 1 cut(s) 641
HpaII CCGG 1 cut(s) 632
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 147, 345
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 2 cut(s) 496, 550
Hpy8I GTNNAC 2 cut(s) 147, 345
HpyAV CCTTC 4 cut(s) 187, 553, 576, 580
HpyCH4III ACNGT 2 cut(s) 601, 628
HpyCH4V TGCA 4 cut(s) 16, 161, 303, 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 18, 22, 544
HpyF3I CTNAG 2 cut(s) 8, 573
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 1 cut(s) 474
Kzo9I GATC 4 cut(s) 74, 121, 285, 420
LpnPI CCDG 8 cut(s) 213, 302, 329, 393, 501, 553, 580, 645
Lsp1109I GCAGC 2 cut(s) 46, 383
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 113
MalI GATC 4 cut(s) 76, 123, 287, 422
MboI GATC 4 cut(s) 74, 121, 285, 420
MboII GAAGA 3 cut(s) 287, 413, 484
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 2 cut(s) 138, 162
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 4 cut(s) 88, 225, 278, 528
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 2 cut(s) 93, 462
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 1 cut(s) 568
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 568
MwoI GCNNNNNNNGC 4 cut(s) 13, 18, 22, 544
NdeI CATATG 1 cut(s) 277
NdeII GATC 4 cut(s) 74, 121, 285, 420
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 3 cut(s) 76, 199, 486
NspI RCATGY 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 218
PciI ACATGT 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 641
PflMI CCANNNNNTGG 1 cut(s) 360
PfoI TCCNGGA 1 cut(s) 566
PkrI GCNGC 3 cut(s) 61, 373, 478
PscI ACATGT 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 566
PspN4I GGNNCC 3 cut(s) 76, 199, 486
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 2 cut(s) 93, 462
SatI GCNGC 3 cut(s) 60, 372, 477
Sau3AI GATC 4 cut(s) 74, 121, 285, 420
ScrFI CCNGG 1 cut(s) 568
SduI GDGCHC 1 cut(s) 456
SfaNI GCATC 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 461, 548
SmoI CTYRAG 2 cut(s) 461, 548
Sse9I AATT 2 cut(s) 138, 162
SsiI CCGC 4 cut(s) 190, 271, 450, 477
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 566
StyI CCWWGG 2 cut(s) 49, 393
TaaI ACNGT 2 cut(s) 601, 628
TasI AATT 2 cut(s) 138, 162
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 2 cut(s) 93, 462
Tru9I TTAA 2 cut(s) 93, 462
TscAI CASTG 1 cut(s) 381
TseI GCWGC 2 cut(s) 59, 371
TspDTI ATGAA 2 cut(s) 17, 157
TspRI CASTG 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 360
Vha464I CTTAAG 1 cut(s) 461
XceI RCATGY 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.