Prupe.1G571000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010190
Physical Location & Seq
Reverse (-)
46498988 .. 46502861
3874 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G571000.1

Sequence Viewer

Length: 885 bp
ATGAAGAAGAGGACAGTGTACGTTTGGGGGGTAGCCATTCTCTGTTTTGTGGTGTTGATGATCGTCACTCCTGCCATCCCTCAGTCTGAAGCTTACCACGATTTCGCTGATCAGCGCGAGTTTTTGGGTATTCCTAATACACTTAATGTGGTTTCAAATTTCCCTTTCCTTGTTATTGGTCTCATTGGTCTTGTCCTTTGCTACTATGGGGATTATTTTAAGTTCAGCTTGCAAGGAGAGCTTTGGGGTTGGACGTGTTTTTACATCGGTGTGGCTGCTGTTGCAATCGGATCCTCATACTATCATCTGAAGCCAAATGATGCTCGTCTTGTGTGGGATCGCTTGCCAATGACAATTGCGTTCACATCGATCATTGCAATCTTTATCATTGAAAGGATTGATGAGCGGAAGGGAACAATTTCCATCATACCTCTGCTTTTGGCGGGTATTATCAGCATATTGTATTGGAGGTTCTTTGATGACCTCCGTCCATATGCTATGGTCCAATTTCTTCCTTGCATTGCCATTCCTCTGATGGCTATATTGTTGCCTCCAATGTACACTCATTCCACATATTGGCTTTGGGCAGCAGGATTCTATCTTTTAGCTAAGGTGGAAGAAGCTGCTGATAAAGTGATCTACGATTGGACTCATCATATTGTTAGTGGGCACACCCTCAAGCATTTGTGCGCTGCAATGGTTCCTGTATTCTTGACGCTTATGCTTGCAAAGCGGACTGTTGAACCAGCGAGGCAAAGTTTGCTCAAGACATGGAAGATTTCCTGGACTAAATTTAGAAAGACTGATGGCACAGTAGAGAGCGATGGCACAGTAGAGAGTTACACTTGTACCTACTCTACAGTTCCAGTTGTGGAATCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

295

Amino Acids

33.5

Weight (kDa)

7.62

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71190 AT1G71190
fragaria_vesca FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250 FvH4_5g29250
malus_domestica MD08G1233100.v1.1
prunus_persica Prupe.1G571000_v2.0.a1
pyrus_communis pycom08g20200
rosa_chinensis RchiOBHm_Chr7g0222011
rosa_laevigata RLG00000002103
rosa_multiflora Rmu_sc0004325.1_g000004
rosa_roxburghii Rroxscaffold_3G00237500
rosa_rugosa Rorug07G0204900 Rorug07G0205000
rosa_samantha Rh7AG345500 Rh7BG336000 Rh7CG363200 Rh7DG343800
rosa_wichuraiana Rw7G029300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 576
AccBSI CCGCTC 1 cut(s) 406
AccII CGCG 1 cut(s) 117
AciI CCGC 3 cut(s) 406, 443, 733
AclWI GGATC 3 cut(s) 285, 298, 345
AcsI RAATTY 2 cut(s) 157, 791
AcuI CTGAAG 2 cut(s) 108, 329
AfaI GTAC 3 cut(s) 20, 560, 850
AfiI CCNNNNNNNGG 1 cut(s) 576
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 156, 392, 743
AjiI CACGTC 1 cut(s) 255
AjnI CCWGG 1 cut(s) 782
AluBI AGCT 5 cut(s) 92, 228, 241, 608, 623
AluI AGCT 5 cut(s) 92, 228, 241, 608, 623
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 3 cut(s) 285, 298, 345
ApeKI GCWGC 4 cut(s) 275, 587, 623, 692
ApoI RAATTY 2 cut(s) 157, 791
Asp700I GAANNNNTTC 1 cut(s) 418
AspLEI GCGC 2 cut(s) 117, 692
AspS9I GGNCC 1 cut(s) 502
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 672
BaeI ACNNNNGTAYC 2 cut(s) 832, 865
BamHI GGATCC 1 cut(s) 290
BbvI GCAGC 4 cut(s) 262, 599, 610, 679
BccI CCATC 5 cut(s) 83, 431, 529, 800, 818
BciT130I CCWGG 1 cut(s) 784
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 858
BisI GCNGC 4 cut(s) 276, 588, 624, 693
BlsI GCNGC 4 cut(s) 277, 589, 625, 694
Bme1390I CCNGG 1 cut(s) 784
Bme18I GGWCC 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 2 cut(s) 292, 702
BmrFI CCNGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 310
BoxI GACNNNNGTC 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 2 cut(s) 662, 749
Bsa29I ATCGAT 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse1I ACTGG 1 cut(s) 866
Bse3DI GCAATG 3 cut(s) 372, 519, 702
BseBI CCWGG 1 cut(s) 784
BseCI ATCGAT 1 cut(s) 368
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMI GCAATG 3 cut(s) 372, 519, 702
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 866
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 4 cut(s) 262, 599, 610, 679
Bsh1236I CGCG 1 cut(s) 117
BshVI ATCGAT 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 672
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 6 cut(s) 60, 109, 290, 337, 369, 636
BspACI CCGC 3 cut(s) 406, 443, 733
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 368
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 292, 702
BspPI GGATC 3 cut(s) 285, 298, 345
BspTNI GGTCTC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 406
BsrDI GCAATG 3 cut(s) 372, 519, 702
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 1 cut(s) 866
BssMI GATC 6 cut(s) 60, 109, 290, 337, 369, 636
Bst2UI CCWGG 1 cut(s) 784
Bst4CI ACNGT 5 cut(s) 16, 739, 814, 832, 862
Bst6I CTCTTC 1 cut(s) 2
BstAPI GCANNNNNTGC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 3 cut(s) 230, 344, 726
BstDEI CTNAG 2 cut(s) 81, 609
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 2 cut(s) 117, 692
BstKTI GATC 6 cut(s) 63, 112, 293, 340, 372, 639
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 6 cut(s) 60, 109, 290, 337, 369, 636
BstMWI GCNNNNNNNGC 4 cut(s) 238, 281, 730, 760
BstNI CCWGG 1 cut(s) 784
BstPAI GACNNNNGTC 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 782
BstSFI CTRYAG 1 cut(s) 858
BstSLI GKGCMC 1 cut(s) 672
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 262, 599, 610, 679
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
Bsu15I ATCGAT 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 368
BtgZI GCGATG 1 cut(s) 837
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 230, 344, 726
CfoI GCGC 2 cut(s) 117, 692
Cfr13I GGNCC 1 cut(s) 502
ClaI ATCGAT 1 cut(s) 368
CseI GACGC 1 cut(s) 724
Csp6I GTAC 3 cut(s) 19, 559, 849
CviAII CATG 1 cut(s) 771
CviQI GTAC 3 cut(s) 19, 559, 849
DdeI CTNAG 2 cut(s) 81, 609
DpnI GATC 6 cut(s) 62, 111, 292, 339, 371, 638
DpnII GATC 6 cut(s) 60, 109, 290, 337, 369, 636
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 108, 329
EcoRII CCWGG 1 cut(s) 782
FaeI CATG 1 cut(s) 774
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 225, 257
FatI CATG 1 cut(s) 770
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 4 cut(s) 276, 588, 624, 693
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 4 cut(s) 276, 588, 624, 693
GlaI GCGC 2 cut(s) 116, 691
GluI GCNGC 4 cut(s) 276, 588, 624, 693
HgaI GACGC 1 cut(s) 724
HhaI GCGC 2 cut(s) 117, 692
Hin1II CATG 1 cut(s) 774
Hin6I GCGC 2 cut(s) 115, 690
HinP1I GCGC 2 cut(s) 115, 690
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 3 cut(s) 594, 649, 875
Hpy166II GTNNAC 3 cut(s) 19, 363, 561
Hpy188I TCNGA 4 cut(s) 88, 290, 309, 534
Hpy188III TCNNGA 2 cut(s) 712, 766
Hpy8I GTNNAC 3 cut(s) 19, 363, 561
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 5 cut(s) 16, 739, 814, 832, 862
HpyCH4IV ACGT 2 cut(s) 21, 254
HpyCH4V TGCA 6 cut(s) 232, 284, 377, 519, 695, 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 281, 730, 760
HpyF3I CTNAG 2 cut(s) 81, 609
HpySE526I ACGT 2 cut(s) 21, 254
Hsp92II CATG 1 cut(s) 774
HspAI GCGC 2 cut(s) 115, 690
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 6 cut(s) 60, 109, 290, 337, 369, 636
LpnPI CCDG 7 cut(s) 84, 576, 717, 759, 769, 796, 879
Lsp1109I GCAGC 4 cut(s) 262, 599, 610, 679
LweI GCATC 1 cut(s) 310
MaeII ACGT 2 cut(s) 21, 254
MaeIII GTNAC 2 cut(s) 64, 839
MalI GATC 6 cut(s) 62, 111, 292, 339, 371, 638
MbiI CCGCTC 1 cut(s) 406
MboI GATC 6 cut(s) 60, 109, 290, 337, 369, 636
MboII GAAGA 5 cut(s) 16, 19, 503, 629, 787
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 5 cut(s) 157, 354, 417, 506, 791
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 418
MseI TTAA 2 cut(s) 144, 219
MslI CAYNNNNRTG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 784
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 784
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 4 cut(s) 238, 281, 730, 760
NdeI CATATG 1 cut(s) 493
NdeII GATC 6 cut(s) 60, 109, 290, 337, 369, 636
NlaIII CATG 1 cut(s) 774
NlaIV GGNNCC 2 cut(s) 292, 702
NmuCI GTSAC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 2 cut(s) 594, 875
PflMI CCANNNNNTGG 1 cut(s) 576
PfoI TCCNGGA 1 cut(s) 782
PkrI GCNGC 4 cut(s) 277, 589, 625, 694
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PshAI GACNNNNGTC 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 782
PspGI CCWGG 1 cut(s) 782
PspN4I GGNNCC 2 cut(s) 292, 702
PspPI GGNCC 1 cut(s) 502
PsrI GAACNNNNNNTAC 2 cut(s) 455, 487
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 3 cut(s) 20, 560, 850
RsaNI GTAC 3 cut(s) 19, 559, 849
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 2 cut(s) 144, 219
SatI GCNGC 4 cut(s) 276, 588, 624, 693
Sau3AI GATC 6 cut(s) 60, 109, 290, 337, 369, 636
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 1 cut(s) 784
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 858
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 677, 764
SmoI CTYRAG 2 cut(s) 677, 764
Sse9I AATT 5 cut(s) 157, 354, 417, 506, 791
SsiI CCGC 3 cut(s) 406, 443, 733
StyD4I CCNGG 1 cut(s) 782
TaaI ACNGT 5 cut(s) 16, 739, 814, 832, 862
TaiI ACGT 2 cut(s) 24, 257
TaqI TCGA 1 cut(s) 368
TasI AATT 5 cut(s) 157, 354, 417, 506, 791
TatI WGTACW 1 cut(s) 558
TfiI GAWTC 2 cut(s) 594, 875
Tru1I TTAA 2 cut(s) 144, 219
Tru9I TTAA 2 cut(s) 144, 219
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 4 cut(s) 275, 587, 623, 692
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 576
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 2 cut(s) 157, 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.