Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011300

Physical Location & Seq

Genomic Coordinates Reverse (-)

26861657 .. 26863454

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATGAAGCAAGCCCGCTCTTTGCTCTCCAGGAGCCTTTGTGACCAAAGTAAGTCACTTTTCGAAGCTTCGACGTTGCGTGGTTTTGCAAGCTGGTCAAATTCTTCAACCCCTGGACGTGGATTCCCTGGTAAAGATGCCGCAAAGCCTAGTGGTCGATTGTTCGCACCTTATTCTATCTTCAAAGGAAAAGCTGCTCTCTCTGTTGAACCTGTTCTTCCCAGTTTCACTGAAATCGATTCGGGAAATCTTCGGATAGATCGTCGTGGATCCTTAATGATGACTTTTATGCCTGCTATTGGTGAGCGTAAGTACGACTGGGAAAAGAAACAGAAATTTGCTTTGTCACCTACTGAAGTTGGATCCTTAATTAGCATGGGTTCCAAAGACAGCTCCGAGTTTTTCCATGACCCTTCCATGAAATCAAGTAATGCTGGTCAAGTCAGGAAGTCACTGTCAGTTAAGCCCCACGCAGATGGTAGCGGCTACTTCATCTCATTGAGCGTTAACAATAGCATCCTCAAAACCAATGACTATTTTGTGGTTCCTGTCACAAAAGCTGAATTTGCAGTGATGAAGACAGCTTTTAGTTTTGCTCTTCCACACATCATGGGTTGGAATCGGTTAACTGGTCACGTTAATACTGAAGCTCTGCCGTCGAGGAATGTTTCTCATCTAAAGACTGAACCACAGTTAGAGCTGGAGTGGGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Whirly

Protein Analysis

238

Amino Acids

26.29

Weight (kDa)

9.65

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Whirly	PF08536	60 - 194	1.8e-61	Whirly transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71260
fragaria_vesca	FvH4_2g00250 FvH4_2g00250
malus_domestica	MD05G1005800.v1.1
prunus_persica	Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1
pyrus_communis	pycom05g00090
rosa_chinensis	RchiOBHm_Chr6g0249551
rosa_laevigata	RLG00000015563
rosa_multiflora	Rmu_sc0006936.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217560
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003200 Rh6AG171000 Rh6BG006900 Rh6CG002400 Rh6DG002200
rosa_wichuraiana	Rw6G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	18
AciI	CCGC	3 cut(s)	16, 141, 483
AclWI	GGATC	4 cut(s)	264, 277, 357, 370
AcsI	RAATTY	3 cut(s)	100, 335, 563
AcuI	CTGAAG	2 cut(s)	375, 666
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	119, 299
AgsI	TTSAA	3 cut(s)	108, 184, 209
AjiI	CACGTC	1 cut(s)	119
AjnI	CCWGG	3 cut(s)	29, 112, 127
AluBI	AGCT	8 cut(s)	68, 93, 194, 393, 560, 584, 650, 700
AluI	AGCT	8 cut(s)	68, 93, 194, 393, 560, 584, 650, 700
AlwI	GGATC	4 cut(s)	264, 277, 357, 370
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	3 cut(s)	100, 335, 563
Asp700I	GAANNNNTTC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	314, 339
AsuII	TTCGAA	1 cut(s)	63
BamHI	GGATCC	2 cut(s)	269, 362
BbsI	GAAGAC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	3 cut(s)	31, 114, 129
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	3 cut(s)	141, 195, 484
BlsI	GCNGC	3 cut(s)	142, 196, 485
Bme1390I	CCNGG	3 cut(s)	31, 114, 129
BmgBI	CACGTC	1 cut(s)	119
BmiI	GGNNCC	5 cut(s)	35, 271, 364, 382, 546
BmrFI	CCNGG	3 cut(s)	31, 114, 129
BmrI	ACTGGG	2 cut(s)	216, 328
BmsI	GCATC	2 cut(s)	127, 525
BmuI	ACTGGG	2 cut(s)	216, 328
BpiI	GAAGAC	1 cut(s)	584
BpmI	CTGGAG	1 cut(s)	13
Bpu14I	TTCGAA	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	112, 127
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 299
Bse1I	ACTGG	3 cut(s)	222, 323, 634
BseBI	CCWGG	3 cut(s)	31, 114, 129
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	112, 127
BseGI	GGATG	1 cut(s)	516
BseLI	CCNNNNNNNGG	2 cut(s)	119, 299
BseNI	ACTGG	3 cut(s)	222, 323, 634
BseXI	GCAGC	1 cut(s)	181
BshVI	ATCGAT	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	119, 299
Bsp119I	TTCGAA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	259, 269, 362
BspACI	CCGC	3 cut(s)	16, 141, 483
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	5 cut(s)	35, 271, 364, 382, 546
BspPI	GGATC	4 cut(s)	264, 277, 357, 370
BspQI	GCTCTTC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	222, 323, 634
BssECI	CCNNGG	2 cut(s)	112, 127
BssMI	GATC	3 cut(s)	259, 269, 362
Bst2UI	CCWGG	3 cut(s)	31, 114, 129
Bst4CI	ACNGT	2 cut(s)	456, 693
Bst6I	CTCTTC	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	4 cut(s)	12, 16, 91, 294
BstF5I	GGATG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	262, 272, 365
BstMBI	GATC	3 cut(s)	259, 269, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	3 cut(s)	31, 114, 129
BstSCI	CCNGG	3 cut(s)	29, 112, 127
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	2 cut(s)	269, 362
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	2 cut(s)	269, 362
Bsu15I	ATCGAT	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	516
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	3 cut(s)	228, 452, 576
Cac8I	GCNNGC	4 cut(s)	12, 16, 91, 294
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	4 cut(s)	376, 407, 418, 610
CviQI	GTAC	1 cut(s)	313
DpnI	GATC	3 cut(s)	261, 271, 364
DpnII	GATC	3 cut(s)	259, 269, 362
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco57I	CTGAAG	2 cut(s)	375, 666
EcoRII	CCWGG	3 cut(s)	29, 112, 127
FaeI	CATG	4 cut(s)	379, 410, 421, 613
FaiI	YATR	5 cut(s)	290, 377, 408, 419, 611
FatI	CATG	4 cut(s)	375, 406, 417, 609
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	141, 195, 484
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	3 cut(s)	141, 195, 484
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	3 cut(s)	141, 195, 484
GsuI	CTGGAG	1 cut(s)	13
Hin1II	CATG	4 cut(s)	379, 410, 421, 613
HincII	GTYRAC	2 cut(s)	508, 627
HindII	GTYRAC	2 cut(s)	508, 627
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	3 cut(s)	123, 239, 619
HpaI	GTTAAC	2 cut(s)	508, 627
HphI	GGTGA	2 cut(s)	314, 339
Hpy166II	GTNNAC	2 cut(s)	508, 627
Hpy188I	TCNGA	2 cut(s)	255, 397
Hpy188III	TCNNGA	2 cut(s)	243, 445
Hpy8I	GTNNAC	2 cut(s)	508, 627
Hpy99I	CGWCG	3 cut(s)	76, 267, 661
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	2 cut(s)	456, 693
HpyCH4IV	ACGT	3 cut(s)	74, 118, 636
HpyCH4V	TGCA	2 cut(s)	89, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpySE526I	ACGT	3 cut(s)	74, 118, 636
Hsp92II	CATG	4 cut(s)	379, 410, 421, 613
KspAI	GTTAAC	2 cut(s)	508, 627
Kzo9I	GATC	3 cut(s)	259, 269, 362
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	2 cut(s)	33, 398
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	2 cut(s)	127, 525
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	3 cut(s)	74, 118, 636
MaeIII	GTNAC	6 cut(s)	41, 54, 345, 450, 550, 632
MalI	GATC	3 cut(s)	261, 271, 364
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	3 cut(s)	259, 269, 362
MboII	GAAGA	6 cut(s)	96, 172, 209, 242, 589, 590
MflI	RGATCY	2 cut(s)	269, 362
MluCI	AATT	4 cut(s)	100, 335, 369, 563
MmeI	TCCRAC	2 cut(s)	340, 596
MnlI	CCTC	2 cut(s)	530, 654
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	6 cut(s)	275, 368, 462, 507, 626, 639
MslI	CAYNNNNRTG	1 cut(s)	474
MspR9I	CCNGG	3 cut(s)	31, 114, 129
MvaI	CCWGG	3 cut(s)	31, 114, 129
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	3 cut(s)	259, 269, 362
NlaIII	CATG	4 cut(s)	379, 410, 421, 613
NlaIV	GGNNCC	5 cut(s)	35, 271, 364, 382, 546
NmuCI	GTSAC	6 cut(s)	41, 54, 345, 450, 550, 632
NspV	TTCGAA	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	123, 239, 619
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	142, 196, 485
Psp6I	CCWGG	3 cut(s)	29, 112, 127
PspGI	CCWGG	3 cut(s)	29, 112, 127
PspN4I	GGNNCC	5 cut(s)	35, 271, 364, 382, 546
PsuI	RGATCY	2 cut(s)	269, 362
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	6 cut(s)	275, 368, 462, 507, 626, 639
SatI	GCNGC	3 cut(s)	141, 195, 484
Sau3AI	GATC	3 cut(s)	259, 269, 362
ScrFI	CCNGG	3 cut(s)	31, 114, 129
SfaNI	GCATC	2 cut(s)	127, 525
SfuI	TTCGAA	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	100, 335, 369, 563
SsiI	CCGC	3 cut(s)	16, 141, 483
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	29, 112, 127
TaaI	ACNGT	2 cut(s)	456, 693
TaiI	ACGT	3 cut(s)	77, 121, 639
TaqI	TCGA	5 cut(s)	63, 71, 157, 237, 659
TasI	AATT	4 cut(s)	100, 335, 369, 563
TauI	GCSGC	2 cut(s)	143, 486
TfiI	GAWTC	3 cut(s)	123, 239, 619
Tru1I	TTAA	6 cut(s)	275, 368, 462, 507, 626, 639
Tru9I	TTAA	6 cut(s)	275, 368, 462, 507, 626, 639
TscAI	CASTG	3 cut(s)	235, 459, 576
TseFI	GTSAC	6 cut(s)	41, 54, 345, 450, 550, 632
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	6 cut(s)	41, 54, 345, 450, 550, 632
TspDTI	ATGAA	4 cut(s)	20, 434, 481, 590
TspRI	CASTG	3 cut(s)	235, 459, 576
XapI	RAATTY	3 cut(s)	100, 335, 563
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.