Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006936.1

Orthogroup ID

OG0011300

Physical Location & Seq

Genomic Coordinates Forward (+)

18381 .. 21993

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006936.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgatgcagcttttgcgcgtcttctcctcctccaggaaccagttgtcaaagagagctgctttatcgttggattcttttacacaaagcaccagcttttcaactgccaggcagaatttttctgctaaaggaagaatcggtgatcaagtatatgctcctttttctatctacaaaggcaaagctgcactctccttgagtcctgttctcccaacattcactaaattggaatctggaagtgttgtggttgagcgacgtggttccgtgatgttaaagttcatgcctgcaattggtgagcgcaaatatgactcggagaagaaacagttgtttgctttatcggcaacagaggttggttctctaatcagcttgggtcccaaagattcatgtgaattatttcatgatccctctatgcaatcaagtaatgctggtcaagtgaggaagagcttatcaatcaagcctcatgctgatggctattttatttctttgactgttgtcaacaacctactgaaaaccagagagagtttctcagttcctgtcacaacggctgaatttgctgtaatgaagactgcttgcagctttgcactcccccacatcattggttgggatcggttgacaaataaggtgccaagaggcatagaagtgcacaaatcagagatggcggaaccacaacttctggatgaatgggagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Whirly

Protein Analysis

228

Amino Acids

25.23

Weight (kDa)

9.57

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71260
fragaria_vesca	FvH4_2g00250 FvH4_2g00250
malus_domestica	MD05G1005800.v1.1
prunus_persica	Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1
pyrus_communis	pycom05g00090
rosa_chinensis	RchiOBHm_Chr6g0249551
rosa_laevigata	RLG00000015563
rosa_multiflora	Rmu_sc0006936.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217560
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003200 Rh6AG171000 Rh6BG006900 Rh6CG002400 Rh6DG002200
rosa_wichuraiana	Rw6G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	616
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	2 cut(s)	389, 606
AcsI	RAATTY	2 cut(s)	112, 542
AfiI	CCNNNNNNNGG	2 cut(s)	33, 284
AgsI	TTSAA	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	32, 104
AluBI	AGCT	7 cut(s)	10, 56, 93, 179, 360, 438, 570
AluI	AGCT	7 cut(s)	10, 56, 93, 179, 360, 438, 570
Alw21I	GWGCWC	1 cut(s)	639
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	2 cut(s)	389, 606
AlwNI	CAGNNNCTG	1 cut(s)	527
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	4 cut(s)	7, 56, 179, 567
ApoI	RAATTY	2 cut(s)	112, 542
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	18, 294
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	149, 299
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	13, 563
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	4 cut(s)	19, 43, 166, 579
BccI	CCATC	2 cut(s)	455, 643
BceAI	ACGGC	1 cut(s)	552
BciT130I	CCWGG	2 cut(s)	34, 106
BclI	TGATCA	1 cut(s)	139
BisI	GCNGC	4 cut(s)	8, 57, 180, 568
BlsI	GCNGC	4 cut(s)	9, 58, 181, 569
Bme1390I	CCNGG	2 cut(s)	34, 106
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
BmrFI	CCNGG	2 cut(s)	34, 106
BoxI	GACNNNNGTC	1 cut(s)	485
BpiI	GAAGAC	2 cut(s)	13, 563
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 284
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	34, 106
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	2 cut(s)	33, 284
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	16, 19
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	4 cut(s)	19, 43, 166, 579
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	33, 284
BsmFI	GGGAC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	3 cut(s)	139, 394, 598
BspACI	CCGC	1 cut(s)	653
BspCNI	CTCAG	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
BspPI	GGATC	2 cut(s)	389, 606
BspQI	GCTCTTC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	139, 394, 598
Bst2UI	CCWGG	2 cut(s)	34, 106
Bst4CI	ACNGT	2 cut(s)	318, 484
Bst6I	CTCTTC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	279, 565
BstDEI	CTNAG	1 cut(s)	520
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	18, 294
BstKTI	GATC	3 cut(s)	142, 397, 601
BstMBI	GATC	3 cut(s)	139, 394, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 332, 545
BstNI	CCWGG	2 cut(s)	34, 106
BstPAI	GACNNNNGTC	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	32, 104
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	4 cut(s)	19, 43, 166, 579
BstV2I	GAAGAC	2 cut(s)	13, 563
BstXI	CCANNNNNNTGG	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	279, 565
CaiI	CAGNNNCTG	1 cut(s)	527
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	2 cut(s)	18, 294
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	7
CviAII	CATG	4 cut(s)	274, 378, 392, 455
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	3 cut(s)	141, 396, 600
DpnII	GATC	3 cut(s)	139, 394, 598
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	668
Eco47I	GGWCC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	32, 104
FaeI	CATG	4 cut(s)	277, 381, 395, 458
FaiI	YATR	9 cut(s)	148, 150, 275, 300, 379, 393, 404, 456, 629
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	4 cut(s)	273, 377, 391, 454
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	8, 57, 180, 568
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	4 cut(s)	8, 57, 180, 568
GlaI	GCGC	2 cut(s)	17, 293
GluI	GCNGC	4 cut(s)	8, 57, 180, 568
GsuI	CTGGAG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	2 cut(s)	18, 294
Hin1II	CATG	4 cut(s)	277, 381, 395, 458
Hin6I	GCGC	2 cut(s)	16, 292
HinP1I	GCGC	2 cut(s)	16, 292
HincII	GTYRAC	2 cut(s)	490, 606
HindII	GTYRAC	2 cut(s)	490, 606
HinfI	GANTC	6 cut(s)	71, 132, 193, 224, 302, 374
HphI	GGTGA	2 cut(s)	149, 299
Hpy166II	GTNNAC	3 cut(s)	490, 606, 637
Hpy188I	TCNGA	2 cut(s)	307, 646
Hpy188III	TCNNGA	3 cut(s)	228, 392, 668
Hpy8I	GTNNAC	3 cut(s)	490, 606, 637
Hpy99I	CGWCG	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	318, 484
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	7 cut(s)	7, 182, 281, 406, 567, 575, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 332, 545
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	4 cut(s)	277, 381, 395, 458
HspAI	GCGC	2 cut(s)	16, 292
KflI	GGGWCCC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	139, 394, 598
LguI	GCTCTTC	1 cut(s)	428
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	4 cut(s)	19, 43, 166, 579
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	3 cut(s)	141, 396, 600
MboI	GATC	3 cut(s)	139, 394, 598
MboII	GAAGA	5 cut(s)	13, 141, 322, 445, 568
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	5 cut(s)	112, 218, 282, 383, 542
MlyI	GAGTC	2 cut(s)	202, 296
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	7 cut(s)	37, 40, 334, 409, 423, 462, 617
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	459, 632
MspR9I	CCNGG	2 cut(s)	34, 106
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	34, 106
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	13, 332, 545
NdeII	GATC	3 cut(s)	139, 394, 598
NlaIII	CATG	4 cut(s)	277, 381, 395, 458
NlaIV	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
NmuCI	GTSAC	1 cut(s)	529
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	4 cut(s)	71, 132, 224, 374
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	9, 58, 181, 569
PleI	GAGTC	2 cut(s)	201, 296
PpsI	GAGTC	2 cut(s)	201, 296
PpuMI	RGGWCCY	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	32, 104
PspGI	CCWGG	2 cut(s)	32, 104
PspN4I	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	459, 632
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	4 cut(s)	8, 57, 180, 568
Sau3AI	GATC	3 cut(s)	139, 394, 598
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	2 cut(s)	202, 296
ScrFI	CCNGG	2 cut(s)	34, 106
SduI	GDGCHC	1 cut(s)	639
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	2 cut(s)	459, 632
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	5 cut(s)	112, 218, 282, 383, 542
SsiI	CCGC	1 cut(s)	653
StyD4I	CCNGG	2 cut(s)	32, 104
TaaI	ACNGT	2 cut(s)	318, 484
TaiI	ACGT	1 cut(s)	253
TasI	AATT	5 cut(s)	112, 218, 282, 383, 542
TfiI	GAWTC	4 cut(s)	71, 132, 224, 374
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	4 cut(s)	7, 56, 179, 567
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	5 cut(s)	262, 366, 380, 569, 687
TspGWI	ACGGA	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	112, 542
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.