Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011300

Physical Location & Seq

Genomic Coordinates Forward (+)

380081 .. 383203

Gene Structure 3123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00250.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATGCAGCTTTTGCGCGTCTTCTCCTCCTCCTCCTCCAGGAACCAGTTATCAAAGAGAGCTGCTTCGTCGTTGGATGCTTTTACACAAAGCACCGGCTTTTCTACTGCCAGGCAGAATTTTTCTGCTAAAGGAAGAATTGGTAATCAGATATATGCTCCTTTTTCTATCTACAAAGGCAAAGCTGCACTCTCTTTGAGTCCTATTCTCCCCACATTCACTAAATTGGAAACTGGAAGTGTTGTGGTTGAGCGACGTGGTTCTGTGATGTTAAAGTTCATGCCTGCAATTGGTGAGCGCAAATATGACTCGGAGAAGAAACAGTTGTTTGCTTTGTCGGCAACAGAGGTTGGGTCTCTCATCAGCTTGGGTCCCAAAGATTCTTGTGAATTGTTTCATGATCCTTCAATGCAATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAATCAAGCCTCATGCAGATGGCTATTTTTTTTCTTTGACTGTTGTTAACAACCTACTGAAAACCAGAGAGAGTTTTTCAGTTCCTGTCACAACTGCTGAATTTGCTGTAATGAAGGCTGCTTGCAGTTTTGCACTCCCCCACATCATTGGTTGGGATCGGTTGACAAATAAGGTGCCAAGAGGTGTAGAAGTGCAAAAATCAGAGATGGTGGAACCACAACTTCTGGATGAATGGGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Whirly

Protein Analysis

231

Amino Acids

25.38

Weight (kDa)

9.66

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Whirly	PF08536	57 - 163	1.2e-45	Whirly transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71260
fragaria_vesca	FvH4_2g00250 FvH4_2g00250
malus_domestica	MD05G1005800.v1.1
prunus_persica	Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1
pyrus_communis	pycom05g00090
rosa_chinensis	RchiOBHm_Chr6g0249551
rosa_laevigata	RLG00000015563
rosa_multiflora	Rmu_sc0006936.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217560
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003200 Rh6AG171000 Rh6BG006900 Rh6CG002400 Rh6DG002200
rosa_wichuraiana	Rw6G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	622
AccII	CGCG	1 cut(s)	18
AclWI	GGATC	2 cut(s)	395, 612
AcsI	RAATTY	2 cut(s)	118, 548
AfiI	CCNNNNNNNGG	2 cut(s)	39, 290
AgsI	TTSAA	1 cut(s)	408
AjiI	CACGTC	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	38, 110
AluBI	AGCT	5 cut(s)	10, 62, 185, 366, 444
AluI	AGCT	5 cut(s)	10, 62, 185, 366, 444
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	395, 612
AlwNI	CAGNNNCTG	1 cut(s)	533
ApeKI	GCWGC	4 cut(s)	7, 62, 185, 566
ApoI	RAATTY	2 cut(s)	118, 548
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	18, 300
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	19, 49, 172, 553
BccI	CCATC	2 cut(s)	461, 649
BciT130I	CCWGG	2 cut(s)	40, 112
BcoDI	GTCTC	1 cut(s)	360
BisI	GCNGC	4 cut(s)	8, 63, 186, 567
BlsI	GCNGC	4 cut(s)	9, 64, 187, 568
Bme1390I	CCNGG	2 cut(s)	40, 112
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	5 cut(s)	44, 372, 373, 624, 663
BmrFI	CCNGG	2 cut(s)	40, 112
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 290
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	46, 238
BseBI	CCWGG	2 cut(s)	40, 112
BseGI	GGATG	2 cut(s)	82, 682
BseLI	CCNNNNNNNGG	2 cut(s)	39, 290
BseNI	ACTGG	2 cut(s)	46, 238
BseRI	GAGGAG	4 cut(s)	16, 19, 22, 25
BseXI	GCAGC	4 cut(s)	19, 49, 172, 553
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	39, 290
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	400, 604
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	5 cut(s)	44, 372, 373, 624, 663
BspPI	GGATC	2 cut(s)	395, 612
BspQI	GCTCTTC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	46, 238
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	2 cut(s)	400, 604
Bst2UI	CCWGG	2 cut(s)	40, 112
Bst4CI	ACNGT	2 cut(s)	324, 490
Bst6I	CTCTTC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	285, 571
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	82, 682
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	18, 300
BstKTI	GATC	2 cut(s)	403, 607
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	400, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 338, 551
BstNI	CCWGG	2 cut(s)	40, 112
BstSCI	CCNGG	2 cut(s)	38, 110
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	4 cut(s)	19, 49, 172, 553
BstV2I	GAAGAC	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	82, 682
Cac8I	GCNNGC	2 cut(s)	285, 571
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	2 cut(s)	18, 300
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	7
CviAII	CATG	3 cut(s)	280, 398, 461
CviJI	RGCY	9 cut(s)	10, 62, 99, 185, 366, 444, 457, 471, 566
CviKI_1	RGCY	9 cut(s)	10, 62, 99, 185, 366, 444, 457, 471, 566
DpnI	GATC	2 cut(s)	402, 606
DpnII	GATC	2 cut(s)	400, 604
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	38, 110
FaeI	CATG	3 cut(s)	283, 401, 464
FaiI	YATR	6 cut(s)	154, 156, 281, 306, 399, 462
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	279, 397, 460
Fnu4HI	GCNGC	4 cut(s)	8, 63, 186, 567
FokI	GGATG	2 cut(s)	89, 689
Fsp4HI	GCNGC	4 cut(s)	8, 63, 186, 567
GlaI	GCGC	2 cut(s)	17, 299
GluI	GCNGC	4 cut(s)	8, 63, 186, 567
GsuI	CTGGAG	1 cut(s)	22
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	2 cut(s)	18, 300
Hin1II	CATG	3 cut(s)	283, 401, 464
Hin6I	GCGC	2 cut(s)	16, 298
HinP1I	GCGC	2 cut(s)	16, 298
HincII	GTYRAC	2 cut(s)	496, 612
HindII	GTYRAC	2 cut(s)	496, 612
HinfI	GANTC	3 cut(s)	199, 308, 380
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	496, 612
Hpy188I	TCNGA	3 cut(s)	150, 313, 652
Hpy188III	TCNNGA	2 cut(s)	398, 674
Hpy8I	GTNNAC	2 cut(s)	496, 612
Hpy99I	CGWCG	2 cut(s)	73, 258
HpyAV	CCTTC	2 cut(s)	414, 556
HpyCH4III	ACNGT	2 cut(s)	324, 490
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	8 cut(s)	7, 188, 287, 412, 464, 573, 581, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 338, 551
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	3 cut(s)	283, 401, 464
HspAI	GCGC	2 cut(s)	16, 298
KflI	GGGWCCC	1 cut(s)	371
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	400, 604
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	4 cut(s)	19, 49, 172, 553
LweI	GCATC	1 cut(s)	67
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	402, 606
MboI	GATC	2 cut(s)	400, 604
MboII	GAAGA	4 cut(s)	13, 147, 328, 451
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	6 cut(s)	118, 138, 224, 288, 389, 548
MlyI	GAGTC	2 cut(s)	208, 302
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	8 cut(s)	37, 40, 43, 46, 340, 429, 468, 623
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	2 cut(s)	272, 495
MslI	CAYNNNNRTG	1 cut(s)	465
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	40, 112
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	40, 112
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	13, 338, 551
NdeII	GATC	2 cut(s)	400, 604
NlaIII	CATG	3 cut(s)	283, 401, 464
NlaIV	GGNNCC	5 cut(s)	44, 372, 373, 624, 663
NmuCI	GTSAC	1 cut(s)	535
PagI	TCATGA	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	9, 64, 187, 568
PleI	GAGTC	2 cut(s)	207, 302
PpsI	GAGTC	2 cut(s)	207, 302
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	38, 110
PspGI	CCWGG	2 cut(s)	38, 110
PspN4I	GGNNCC	5 cut(s)	44, 372, 373, 624, 663
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	272, 495
SatI	GCNGC	4 cut(s)	8, 63, 186, 567
Sau3AI	GATC	2 cut(s)	400, 604
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	208, 302
ScrFI	CCNGG	2 cut(s)	40, 112
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	6 cut(s)	118, 138, 224, 288, 389, 548
StyD4I	CCNGG	2 cut(s)	38, 110
TaaI	ACNGT	2 cut(s)	324, 490
TaiI	ACGT	1 cut(s)	259
TasI	AATT	6 cut(s)	118, 138, 224, 288, 389, 548
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	272, 495
Tru9I	TTAA	2 cut(s)	272, 495
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	4 cut(s)	7, 62, 185, 566
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	4 cut(s)	268, 386, 575, 693
VpaK11BI	GGWCC	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	37
XapI	RAATTY	2 cut(s)	118, 548
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.