Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011300

Physical Location & Seq

Genomic Coordinates Forward (+)

141130 .. 143818

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00090.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTATTAATTTCTTCTCATGTGGGCGAGTCAAGGCTCGGTCCATCTTGTCACGGGCCGGCCCGAACAAGCTCAAAAAGCCCTGGCTCGTGTGGACCGGTTGAGTCGAGAAAAACGGCAAGTCGTCTCGATATTCCAAAGGTATCAAAGCAGAAGTGCAGAAGCATGAGCAGTGGCATTCCCCACCCCCCCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCGAGCAACAAAGATGTTGAAGGTGTTGCGCGTCTTGTCCTCTTCCACCGCGAAATTCAGGAGCCATATCTGCACTAGAGATGCTTTATCAATGTATGCTTTTACTCATATCACCAGATTTTCAACTGCCACTCAGAAATTTTCTGTTAAAGGTCCCAGTTCTCATCAAGTATATGCTTCTTTTGATATCTTCAAAGGCAAAGCTGCCCTCTCTTTGACTCCTGTTCTTCCAACATTCACTAAATTGGAATCTGGAAGTCTTGTAGTTGATCGGCGTGGTTCTGTCATGTTGAAGTTCACTCCTGCCATTGGTGAACGTAAGTATGACTGGGAAAAGAGACAGATGTTTGCTTTATCAGCTACAGAGGTCGGCGCTCTGATAAGCTTGGGTCCCAATGATTCTTGTGAACTATTTCATGATCCCTCAATGAAATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCGATTAAGCCTCATGCGGATGGCAGTGGCTACTTTGTTTCCTTAACTGTTGTCAACAACCTGCTAAAGACCAGAGAGAGTTTCTCAGTTCCTGTCACGACTGCTGAATTTGCTGTTATGAAGACTGCTTGCAGTTTTGCATTGCCCCACATCATGGGTTGGGATAGATTGACGAACAAGATGCCAGCAGGTGGTGGTGGTGGAGGAGGGCAAGAATCAAAGGCGGTTCCACAGCTTTTGGAGGAGTGGGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Whirly

Protein Analysis

315

Amino Acids

33.87

Weight (kDa)

9.93

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71260
fragaria_vesca	FvH4_2g00250 FvH4_2g00250
malus_domestica	MD05G1005800.v1.1
prunus_persica	Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1
pyrus_communis	pycom05g00090
rosa_chinensis	RchiOBHm_Chr6g0249551
rosa_laevigata	RLG00000015563
rosa_multiflora	Rmu_sc0006936.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217560
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003200 Rh6AG171000 Rh6BG006900 Rh6CG002400 Rh6DG002200
rosa_wichuraiana	Rw6G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	866
Acc36I	ACCTGC	2 cut(s)	756, 866
AccB7I	CCANNNNNTGG	2 cut(s)	841, 878
AccII	CGCG	2 cut(s)	252, 272
AciI	CCGC	3 cut(s)	270, 704, 911
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	3 cut(s)	275, 359, 794
AfiI	CCNNNNNNNGG	3 cut(s)	530, 841, 878
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	4 cut(s)	241, 345, 415, 514
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	6 cut(s)	72, 425, 581, 606, 684, 922
AluI	AGCT	6 cut(s)	72, 425, 581, 606, 684, 922
Alw26I	GTCTC	2 cut(s)	131, 553
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	56, 60
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	3 cut(s)	275, 359, 794
AseI	ATTAAT	1 cut(s)	8
AsiGI	ACCGGT	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	252, 596
AspS9I	GGNCC	6 cut(s)	41, 56, 61, 95, 374, 611
AsuHPI	GGTGA	2 cut(s)	325, 545
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	4 cut(s)	41, 95, 374, 611
BauI	CACGAG	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	815
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	52, 701
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	131, 553
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	597
BfuAI	ACCTGC	2 cut(s)	756, 866
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	4 cut(s)	41, 95, 374, 611
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	6 cut(s)	41, 56, 61, 95, 374, 611
BmiI	GGNNCC	5 cut(s)	284, 376, 612, 613, 915
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	2 cut(s)	372, 559
BmsI	GCATC	2 cut(s)	292, 858
BmuI	ACTGGG	2 cut(s)	372, 559
BpiI	GAAGAC	1 cut(s)	815
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
Bsa29I	ATCGAT	1 cut(s)	689
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	3 cut(s)	530, 841, 878
Bse118I	RCCGGY	2 cut(s)	58, 97
Bse1I	ACTGG	2 cut(s)	378, 554
Bse3DI	GCAATG	1 cut(s)	827
BseBI	CCWGG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	3 cut(s)	530, 841, 878
BseMI	GCAATG	1 cut(s)	827
BseMII	CTCAG	2 cut(s)	368, 786
BseNI	ACTGG	2 cut(s)	378, 554
BseRI	GAGGAG	2 cut(s)	906, 944
BseXI	GCAGC	1 cut(s)	412
BsgI	GTGCAG	2 cut(s)	178, 277
Bsh1236I	CGCG	2 cut(s)	252, 272
BshFI	GGCC	2 cut(s)	58, 62
BshTI	ACCGGT	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	689
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	59, 98
BslFI	GGGAC	2 cut(s)	360, 597
BslI	CCNNNNNNNGG	3 cut(s)	530, 841, 878
BsmAI	GTCTC	2 cut(s)	131, 553
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	360, 597
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	58, 62
BsoBI	CYCGRG	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	490, 640
BspACI	CCGC	3 cut(s)	270, 704, 911
BspANI	GGCC	2 cut(s)	58, 62
BspCNI	CTCAG	2 cut(s)	367, 785
BspDI	ATCGAT	1 cut(s)	689
BspFNI	CGCG	2 cut(s)	252, 272
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	5 cut(s)	284, 376, 612, 613, 915
BspMI	ACCTGC	2 cut(s)	756, 866
BspPI	GGATC	1 cut(s)	635
BspQI	GCTCTTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	827
BsrFI	RCCGGY	2 cut(s)	58, 97
BsrI	ACTGG	2 cut(s)	378, 554
BssAI	RCCGGY	2 cut(s)	58, 97
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	490, 640
BssSI	CACGAG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	736
Bst6I	CTCTTC	2 cut(s)	268, 674
BstC8I	GCNNGC	3 cut(s)	60, 817, 873
BstDEI	CTNAG	2 cut(s)	354, 772
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	2 cut(s)	252, 272
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	2 cut(s)	252, 596
BstKTI	GATC	2 cut(s)	493, 643
BstMAI	GTCTC	2 cut(s)	131, 553
BstMBI	GATC	2 cut(s)	490, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 291, 578, 797
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	2 cut(s)	252, 272
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	689
BsuRI	GGCC	2 cut(s)	58, 62
BsuTUI	ATCGAT	1 cut(s)	689
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	2 cut(s)	178, 718
BtsIMutI	CAGTG	2 cut(s)	178, 718
BveI	ACCTGC	2 cut(s)	756, 866
Cac8I	GCNNGC	3 cut(s)	60, 817, 873
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	252, 596
Cfr10I	RCCGGY	2 cut(s)	58, 97
Cfr13I	GGNCC	6 cut(s)	41, 56, 61, 95, 374, 611
ClaI	ATCGAT	1 cut(s)	689
CseI	GACGC	1 cut(s)	241
CspAI	ACCGGT	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviAII	CATG	6 cut(s)	20, 166, 508, 638, 701, 841
DdeI	CTNAG	2 cut(s)	354, 772
DpnI	GATC	2 cut(s)	492, 642
DpnII	GATC	2 cut(s)	490, 640
Eam1104I	CTCTTC	2 cut(s)	268, 674
EarI	CTCTTC	2 cut(s)	268, 674
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	4 cut(s)	41, 95, 374, 611
Eco88I	CYCGRG	1 cut(s)	222
EcoO109I	RGGNCCY	2 cut(s)	374, 611
EcoRII	CCWGG	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	6 cut(s)	23, 169, 511, 641, 704, 844
FaqI	GGGAC	2 cut(s)	360, 597
FatI	CATG	6 cut(s)	19, 165, 507, 637, 700, 840
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	719
FseI	GGCCGGCC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	251, 595
GluI	GCNGC	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	2 cut(s)	58, 62
HapII	CCGG	2 cut(s)	59, 98
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	252, 596
Hin1II	CATG	6 cut(s)	23, 169, 511, 641, 704, 844
Hin6I	GCGC	2 cut(s)	250, 594
HinP1I	GCGC	2 cut(s)	250, 594
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	6 cut(s)	29, 104, 439, 470, 620, 902
HpaII	CCGG	2 cut(s)	59, 98
HphI	GGTGA	2 cut(s)	325, 545
Hpy166II	GTNNAC	5 cut(s)	95, 519, 536, 629, 742
Hpy188I	TCNGA	2 cut(s)	357, 600
Hpy188III	TCNNGA	7 cut(s)	108, 128, 222, 280, 474, 638, 784
Hpy8I	GTNNAC	5 cut(s)	95, 519, 536, 629, 742
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	736
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	4 cut(s)	159, 294, 819, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 291, 578, 797
HpyF3I	CTNAG	2 cut(s)	354, 772
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	6 cut(s)	23, 169, 511, 641, 704, 844
HspAI	GCGC	2 cut(s)	250, 594
KflI	GGGWCCC	1 cut(s)	611
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	490, 640
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	292, 858
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	50, 781
MalI	GATC	2 cut(s)	492, 642
MboI	GATC	2 cut(s)	490, 640
MboII	GAAGA	6 cut(s)	6, 255, 403, 440, 691, 820
MluCI	AATT	5 cut(s)	9, 275, 359, 464, 794
MlyI	GAGTC	3 cut(s)	38, 113, 433
MmeI	TCCRAC	1 cut(s)	476
MroNI	GCCGGC	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	4 cut(s)	8, 369, 693, 731
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	2 cut(s)	59, 98
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	2 cut(s)	252, 272
MwoI	GCNNNNNNNGC	4 cut(s)	78, 291, 578, 797
NaeI	GCCGGC	1 cut(s)	60
NdeII	GATC	2 cut(s)	490, 640
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	6 cut(s)	23, 169, 511, 641, 704, 844
NlaIV	GGNNCC	5 cut(s)	284, 376, 612, 613, 915
NmuCI	GTSAC	2 cut(s)	50, 781
PaeR7I	CTCGAG	1 cut(s)	222
PagI	TCATGA	1 cut(s)	637
PaqCI	CACCTGC	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	674
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	470, 620, 902
PflMI	CCANNNNNTGG	2 cut(s)	841, 878
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	3 cut(s)	37, 112, 433
PpsI	GAGTC	3 cut(s)	37, 112, 433
PpuMI	RGGWCCY	2 cut(s)	374, 611
PshBI	ATTAAT	1 cut(s)	8
Psp5II	RGGWCCY	2 cut(s)	374, 611
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	5 cut(s)	284, 376, 612, 613, 915
PspPI	GGNCC	6 cut(s)	41, 56, 61, 95, 374, 611
PspPPI	RGGWCCY	2 cut(s)	374, 611
PstNI	CAGNNNCTG	1 cut(s)	779
RigI	GGCCGGCC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	4 cut(s)	8, 369, 693, 731
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	2 cut(s)	490, 640
Sau96I	GGNCC	6 cut(s)	41, 56, 61, 95, 374, 611
SchI	GAGTC	3 cut(s)	38, 113, 433
ScrFI	CCNGG	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	292, 858
SfcI	CTRYAG	1 cut(s)	582
Sfr274I	CTCGAG	1 cut(s)	222
SinI	GGWCC	4 cut(s)	41, 95, 374, 611
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	5 cut(s)	9, 275, 359, 464, 794
SsiI	CCGC	3 cut(s)	270, 704, 911
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	736
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	107, 129, 223, 689
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	9, 275, 359, 464, 794
TfiI	GAWTC	3 cut(s)	470, 620, 902
Tru1I	TTAA	4 cut(s)	8, 369, 693, 731
Tru9I	TTAA	4 cut(s)	8, 369, 693, 731
TscAI	CASTG	2 cut(s)	178, 718
TseFI	GTSAC	2 cut(s)	50, 781
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	2 cut(s)	50, 781
TspDTI	ATGAA	3 cut(s)	626, 665, 821
TspRI	CASTG	2 cut(s)	178, 718
Van91I	CCANNNNNTGG	2 cut(s)	841, 878
VpaK11BI	GGWCC	4 cut(s)	41, 95, 374, 611
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	3 cut(s)	275, 359, 794
XhoI	CTCGAG	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.