Rh6AG171000

Single-stranded DNA-bindig protein WHY2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011300
Physical Location & Seq
Reverse (-)
27684847 .. 27688644
3798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG171000.1

Sequence Viewer

Length: 834 bp
ATGGCCGCACTTTTACTTTATTATTTTCCCTCTCTCTTTTTACCTCTTATCCCAACATGTCCTGAATCATTTTTATGGAGACCTACGCCTAACATGACATATATTGAAGATGTTATTGGCACTAAAGTAGCATGGCCTGCTAACAAAGTTGTTTTGGAAAATAGTCCAAACATTGAGGAAGTTGGAAACCTATCATCTCCTTTTCCTTTTGTTTCTGAACCTGCAGGAAGAATCGGTGATCAAGTATATGCTCCTTTTTCTATCTACAAAGGCAAAGCTGCACTCTCCTTGAGTCCTGTTCTCCCAACATTCACTAAATTGGAATCTGGAAGTGTTGTGGTTGAGCGACGTGGTTCCGTGATGTTAAAGTTCATGCCTGCAATTGGTGAGCGCAAATATGACTCGGAGAAGAAACAGTTGTTTGCTTTATCAGCAACAGAGGTTGGGTCTCTAATCAGCTTGGGACCCAAAGATTCATGTGAATTATTTCATGATCCCTCTATGCAATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAATCAAGCCTCATGCAGATGGCTATTTTATTTCTTTGACTGTTGTCAACAACCTACTGAAAACCAGAGAGAGTTTCTCAGTTCCTGACACAACGGCTGAATTTGCTGTAATGAAGACTGCTTGCAGCTTTGCACTCCCCCACATCATGGGTTGGGATCGGTTGACAAATAAGGTGCCAAGAGGCATAGAAGTGCACAAATCAGAGATGGCGGAACCACAACTTCTGGATTGTATTGAAGATGCTATTGGTACTACAATAGCTTGGCCATCTGACAAAGTTGTTATGCTTTGA

Protein Analysis

277

Amino Acids

30.46

Weight (kDa)

5.87

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Whirly PF08536 88 - 220 8.3e-55 Whirly transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 715
AccB7I CCANNNNNTGG 1 cut(s) 688
AciI CCGC 2 cut(s) 6, 752
AclWI GGATC 2 cut(s) 488, 705
AcoI YGGCCR 2 cut(s) 3, 806
AcsI RAATTY 1 cut(s) 641
AfaI GTAC 1 cut(s) 793
AfiI CCNNNNNNNGG 2 cut(s) 383, 688
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 2 cut(s) 107, 779
AjiI CACGTC 1 cut(s) 350
AjuI GAANNNNNNNTTGG 4 cut(s) 99, 131, 771, 803
AluBI AGCT 5 cut(s) 278, 459, 537, 669, 803
AluI AGCT 5 cut(s) 278, 459, 537, 669, 803
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 2 cut(s) 73, 453
Alw44I GTGCAC 1 cut(s) 734
AlwI GGATC 2 cut(s) 488, 705
AlwNI CAGNNNCTG 1 cut(s) 626
AoxI GGCC 3 cut(s) 3, 134, 806
ApaLI GTGCAC 1 cut(s) 734
ApeKI GCWGC 2 cut(s) 278, 666
ApoI RAATTY 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 2 cut(s) 248, 398
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 738
BalI TGGCCA 1 cut(s) 808
BanI GGYRCC 1 cut(s) 715
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 2 cut(s) 265, 678
BccI CCATC 3 cut(s) 554, 742, 817
BceAI ACGGC 1 cut(s) 651
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 73, 453
BfmI CTRYAG 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 3 cut(s) 6, 279, 667
BlsI GCNGC 3 cut(s) 7, 280, 668
Bme18I GGWCC 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 5 cut(s) 355, 465, 466, 717, 756
BmsI GCATC 1 cut(s) 772
BoxI GACNNNNGTC 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 662
BplI GAGNNNNNCTC 2 cut(s) 602, 634
BpuEI CTTGAG 1 cut(s) 310
BsaI GGTCTC 2 cut(s) 73, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 688
BseLI CCNNNNNNNGG 2 cut(s) 383, 688
BseMII CTCAG 1 cut(s) 633
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 2 cut(s) 265, 678
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 3 cut(s) 5, 136, 808
BshNI GGYRCC 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 738
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 2 cut(s) 383, 688
BsmAI GTCTC 2 cut(s) 73, 453
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 3 cut(s) 5, 136, 808
Bso31I GGTCTC 2 cut(s) 73, 453
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 3 cut(s) 238, 493, 697
BspACI CCGC 2 cut(s) 6, 752
BspANI GGCC 3 cut(s) 5, 136, 808
BspCNI CTCAG 1 cut(s) 632
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 5 cut(s) 355, 465, 466, 717, 756
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 2 cut(s) 488, 705
BspQI GCTCTTC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 715
BspTNI GGTCTC 2 cut(s) 73, 453
BssMI GATC 3 cut(s) 238, 493, 697
Bst4CI ACNGT 2 cut(s) 417, 583
Bst6I CTCTTC 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 138, 378, 664
BstDEI CTNAG 1 cut(s) 619
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 3 cut(s) 241, 496, 700
BstMAI GTCTC 2 cut(s) 73, 453
BstMBI GATC 3 cut(s) 238, 493, 697
BstMWI GCNNNNNNNGC 3 cut(s) 137, 431, 644
BstNSI RCATGY 1 cut(s) 60
BstPAI GACNNNNGTC 1 cut(s) 584
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 738
BstV1I GCAGC 2 cut(s) 265, 678
BstV2I GAAGAC 1 cut(s) 662
BsuRI GGCC 3 cut(s) 5, 136, 808
BtrI CACGTC 1 cut(s) 350
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 138, 378, 664
CaiI CAGNNNCTG 1 cut(s) 626
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 792
CviAII CATG 8 cut(s) 57, 94, 132, 373, 477, 491, 554, 688
CviQI GTAC 1 cut(s) 792
DdeI CTNAG 1 cut(s) 619
DpnI GATC 3 cut(s) 240, 495, 699
DpnII GATC 3 cut(s) 238, 493, 697
EaeI YGGCCR 2 cut(s) 3, 806
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
EciI GGCGGA 1 cut(s) 767
Eco31I GGTCTC 2 cut(s) 73, 453
Eco47I GGWCC 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 464
FaeI CATG 8 cut(s) 60, 97, 135, 376, 480, 494, 557, 691
FaqI GGGAC 1 cut(s) 477
FatI CATG 8 cut(s) 56, 93, 131, 372, 476, 490, 553, 687
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 6, 279, 667
Fsp4HI GCNGC 3 cut(s) 6, 279, 667
GlaI GCGC 1 cut(s) 392
GluI GCNGC 3 cut(s) 6, 279, 667
HaeIII GGCC 3 cut(s) 5, 136, 808
HhaI GCGC 1 cut(s) 393
Hin1II CATG 8 cut(s) 60, 97, 135, 376, 480, 494, 557, 691
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 2 cut(s) 589, 705
HindII GTYRAC 2 cut(s) 589, 705
HinfI GANTC 6 cut(s) 65, 231, 292, 323, 401, 473
HphI GGTGA 2 cut(s) 248, 398
Hpy166II GTNNAC 3 cut(s) 589, 705, 736
Hpy188I TCNGA 4 cut(s) 217, 406, 745, 814
Hpy188III TCNNGA 5 cut(s) 62, 327, 491, 626, 767
Hpy8I GTNNAC 3 cut(s) 589, 705, 736
Hpy99I CGWCG 1 cut(s) 351
HpyCH4III ACNGT 2 cut(s) 417, 583
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 8 cut(s) 224, 281, 380, 505, 557, 666, 674, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 431, 644
HpyF3I CTNAG 1 cut(s) 619
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 8 cut(s) 60, 97, 135, 376, 480, 494, 557, 691
HspAI GCGC 1 cut(s) 391
KflI GGGWCCC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 238, 493, 697
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 265, 678
LweI GCATC 1 cut(s) 772
MaeII ACGT 1 cut(s) 349
MalI GATC 3 cut(s) 240, 495, 699
MboI GATC 3 cut(s) 238, 493, 697
MboII GAAGA 6 cut(s) 119, 240, 421, 544, 667, 791
MfeI CAATTG 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 738
MlsI TGGCCA 1 cut(s) 808
MluCI AATT 4 cut(s) 317, 381, 482, 641
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 2 cut(s) 301, 395
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 8 cut(s) 40, 54, 169, 433, 508, 522, 561, 716
Mox20I TGGCCA 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 808
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 3 cut(s) 73, 558, 731
Msp20I TGGCCA 1 cut(s) 808
MunI CAATTG 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 137, 431, 644
NdeII GATC 3 cut(s) 238, 493, 697
NlaIII CATG 8 cut(s) 60, 97, 135, 376, 480, 494, 557, 691
NlaIV GGNNCC 5 cut(s) 355, 465, 466, 717, 756
NspI RCATGY 1 cut(s) 60
PagI TCATGA 1 cut(s) 490
PciI ACATGT 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 4 cut(s) 65, 231, 323, 473
PflMI CCANNNNNTGG 1 cut(s) 688
PkrI GCNGC 3 cut(s) 7, 280, 668
PleI GAGTC 2 cut(s) 300, 395
PpsI GAGTC 2 cut(s) 300, 395
PpuMI RGGWCCY 1 cut(s) 464
PscI ACATGT 1 cut(s) 56
PshAI GACNNNNGTC 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 464
PspN4I GGNNCC 5 cut(s) 355, 465, 466, 717, 756
PspPI GGNCC 1 cut(s) 464
PspPPI RGGWCCY 1 cut(s) 464
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 626
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
RseI CAYNNNNRTG 3 cut(s) 73, 558, 731
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 3 cut(s) 6, 279, 667
Sau3AI GATC 3 cut(s) 238, 493, 697
Sau96I GGNCC 1 cut(s) 464
SbfI CCTGCAGG 1 cut(s) 226
SchI GAGTC 2 cut(s) 301, 395
SdaI CCTGCAGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 1 cut(s) 772
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 3 cut(s) 73, 558, 731
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse8387I CCTGCAGG 1 cut(s) 226
Sse9I AATT 4 cut(s) 317, 381, 482, 641
SsiI CCGC 2 cut(s) 6, 752
TaaI ACNGT 2 cut(s) 417, 583
TaiI ACGT 1 cut(s) 352
TasI AATT 4 cut(s) 317, 381, 482, 641
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 65, 231, 323, 473
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TseI GCWGC 2 cut(s) 278, 666
TspDTI ATGAA 4 cut(s) 361, 465, 479, 668
TspGWI ACGGA 1 cut(s) 346
Van91I CCANNNNNTGG 1 cut(s) 688
VneI GTGCAC 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.